Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002327.1

Orthogroup ID

OG0015706

Physical Location & Seq

Genomic Coordinates Forward (+)

75717 .. 76790

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggatctacagcagcagaacgcaagagctccacagcctcgcggcggcggcggtttctcggcccagtcctctttgctcttccatctaatggtcattttgtttgtggtaacccctttcacaggttttactctcctctctcctcgctctcaaaataatgactacgttttcatcttcgtcgtttccatcaaactcgttttcgccgtcgatttgtactgtatctttaattgcattgagttagggcttcgatttcgagcttgttctgtactcgttgaatttagtcatgttggggtttattggagaggagatactcttcttaagactgttacatatccgggggttcatctcaagttgcctatgatatactttgaacctattcaagtgacccttcagactcatcagttttgtgatattccatgcggtacaaaagatgatgtcatgattaacattgagaagatagaggttggggatatgagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

158

Amino Acids

17.9

Weight (kDa)

6.39

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015706)

Species	Orthologous Gene IDs
malus_domestica	MD16G1164500.v1.1
rosa_chinensis	RchiOBHm_Chr4g0438451
rosa_laevigata	RLG00000006364
rosa_multiflora	Rmu_co8220000.1_g000001 Rmu_sc0002327.1_g000023 Rmu_sc0019260.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379460
rosa_rugosa	Rorug04G0310000.1
rosa_samantha	Rh4AG360700 Rh4BG372000 Rh4BG372100 Rh4CG386000 Rh4CG386100 Rh4DG366800
rosa_wichuraiana	Rw0G006550 Rw0G016500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccII	CGCG	1 cut(s)	42
AciI	CCGC	5 cut(s)	42, 45, 48, 51, 417
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	3 cut(s)	212, 264, 421
AfiI	CCNNNNNNNGG	3 cut(s)	44, 88, 119
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	3 cut(s)	272, 368, 377
AluBI	AGCT	2 cut(s)	29, 254
AluI	AGCT	2 cut(s)	29, 254
Alw21I	GWGCWC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	90, 191
BceAI	ACGGC	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	4 cut(s)	14, 43, 46, 49
BlsI	GCNGC	4 cut(s)	15, 44, 47, 50
Bme1390I	CCNGG	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	333
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 88, 119
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	3 cut(s)	44, 88, 119
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	3 cut(s)	122, 129, 315
BseXI	GCAGC	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	3 cut(s)	44, 88, 119
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	5 cut(s)	42, 45, 48, 51, 417
BspANI	GGCC	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	435
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	83
BspTI	CTTAAG	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	2 cut(s)	215, 322
Bst6I	CTCTTC	2 cut(s)	83, 315
BstAFI	CTTAAG	1 cut(s)	314
BstEII	GGTNACC	1 cut(s)	106
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	8
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	62
CciI	TCATGA	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	3 cut(s)	211, 263, 420
CviAII	CATG	3 cut(s)	281, 414, 436
CviJI	RGCY	5 cut(s)	29, 37, 62, 241, 254
CviKI_1	RGCY	5 cut(s)	29, 37, 62, 241, 254
CviQI	GTAC	3 cut(s)	211, 263, 420
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	2 cut(s)	83, 315
EarI	CTCTTC	2 cut(s)	83, 315
Ecl136II	GAGCTC	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	29
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoO65I	GGTNACC	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	3 cut(s)	284, 417, 439
FaiI	YATR	7 cut(s)	282, 328, 356, 361, 415, 437, 470
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	3 cut(s)	280, 413, 435
Fnu4HI	GCNGC	4 cut(s)	14, 43, 46, 49
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	4 cut(s)	14, 43, 46, 49
GluI	GCNGC	4 cut(s)	14, 43, 46, 49
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	3 cut(s)	284, 417, 439
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	332
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	1 cut(s)	436
Hpy99I	CGWCG	2 cut(s)	179, 206
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	2 cut(s)	215, 322
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	284, 417, 439
Kzo9I	GATC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	3 cut(s)	77, 105, 345
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	3 cut(s)	106, 322, 379
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	4 cut(s)	70, 163, 302, 463
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	2 cut(s)	223, 272
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	6 cut(s)	48, 79, 143, 150, 293, 451
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	3 cut(s)	222, 315, 441
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	333
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	284, 417, 439
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	379
PagI	TCATGA	1 cut(s)	435
PciSI	GCTCTTC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	372
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	4 cut(s)	15, 44, 47, 50
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp124BI	GAGCTC	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	3 cut(s)	212, 264, 421
RsaNI	GTAC	3 cut(s)	211, 263, 420
SacI	GAGCTC	1 cut(s)	31
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	3 cut(s)	222, 315, 441
SatI	GCNGC	4 cut(s)	14, 43, 46, 49
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	31, 124, 165, 256, 373, 462
SfcI	CTRYAG	1 cut(s)	8
SmlI	CTYRAG	2 cut(s)	314, 344
SmoI	CTYRAG	2 cut(s)	314, 344
Sse9I	AATT	2 cut(s)	223, 272
SsiI	CCGC	5 cut(s)	42, 45, 48, 51, 417
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	215, 322
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	3 cut(s)	204, 244, 250
TasI	AATT	2 cut(s)	223, 272
TatI	WGTACW	2 cut(s)	210, 262
TauI	GCSGC	3 cut(s)	45, 48, 51
Tru1I	TTAA	3 cut(s)	222, 315, 441
Tru9I	TTAA	3 cut(s)	222, 315, 441
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	157, 329
Van91I	CCANNNNNTGG	1 cut(s)	88
Vha464I	CTTAAG	1 cut(s)	314
XagI	CCTNNNNNAGG	1 cut(s)	117
XapI	RAATTY	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.