Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002367.1

Orthogroup ID

OG0002966

Physical Location & Seq

Genomic Coordinates Forward (+)

3844 .. 5427

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgtcttggttcagaagcctcatccacgtctcggcggccagagcctcatccccgtcgtcttcagccaaatccagaatcactgaccctttctcatactctctcctctcatgcttcaccaccgaggcccgaccgccggcgttgtactccggcttggggccgacgaggcccggcgagaagccgagggtggtggtgctggggacggggtgggccgggtgtcggctcatgaaggggttggacacgaagctctacgacgtcgtttgcgtctcgccgaggaatcacatggtgttcacgccgctgctggcgtccacgtgtgtgggcactctggagtttaggtcggtggcggagccaatcgggaggatccaacccgccatttcgagggagccagggtcgtatttctttctctccaattgtattgggcttgatacggataagcatttggtgcaatgtgagactgtaactgatggagctgataacttggagccatggaaatttgaaattgcctacgacaagctggtaattgcattgggtgcacagcccacaactttcggaatacgtggtgtagaagaacatgccatttttcttcgtgaagtctaccatgcccaggaaatccgtaggaagctgctcctaaacttgatgctgtcggatgttcccggtgtttcacaggaagagaaaagcagactcctacattgtgttgttgtagggggtggtcccaccggagtcgagttcagtggtgaactaagtgactttattcagaaagatgttcatcagagatatgcccatgtgaaagattacattcatgttaccttgattgaggtttgtccatcatcacttatcctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005777 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031304 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0098573 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

279

Amino Acids

30.74

Weight (kDa)

6.75

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	61 - 274	5.3e-29	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07180 AT2G29990
fragaria_vesca	FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g04370 FvH4_3g38840
malus_domestica	MD03G1067100.v1.1 MD05G1323500.v1.1 MD10G1301300.v1.1
prunus_persica	Prupe.4G039000_v2.0.a1 Prupe.4G039000_v2.0.a1 Prupe.6G055600_v2.0.a1
pyrus_communis	pycom03g05350 pycom05g29800 pycom10g25410
rosa_chinensis	RchiOBHm_Chr5g0006761 RchiOBHm_Chr5g0070091
rosa_laevigata	RLG00000031427 RLG00000036113
rosa_multiflora	Rmu_sc0001044.1_g000041 Rmu_sc0002367.1_g000002
rosa_roxburghii	Rroxscaffold_1G00011050 Rroxscaffold_1G00069280
rosa_rugosa	Rorug04G0424200 Rorug04G0424300 Rorug05G0402300
rosa_samantha	Rh5AG052200 Rh5AG458700 Rh5BG051100 Rh5BG477300 Rh5CG059700 Rh5CG501000 Rh5DG489400
rosa_wichuraiana	Rw5G005230 Rw5G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	591
AciI	CCGC	5 cut(s)	35, 131, 293, 341, 366
AclWI	GGATC	2 cut(s)	352, 365
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	45
AcvI	CACGTG	1 cut(s)	309
AcyI	GRCGYC	2 cut(s)	252, 302
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	6 cut(s)	31, 133, 153, 216, 375, 601
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	494
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	382, 600
AleI	CACNNNNGTG	1 cut(s)	311
AluBI	AGCT	4 cut(s)	244, 467, 511, 619
AluI	AGCT	4 cut(s)	244, 467, 511, 619
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	3 cut(s)	34, 268, 443
Alw44I	GTGCAC	1 cut(s)	528
AlwI	GGATC	2 cut(s)	352, 365
AoxI	GGCC	5 cut(s)	36, 123, 155, 164, 207
ApaLI	GTGCAC	1 cut(s)	528
ApeKI	GCWGC	2 cut(s)	295, 619
ApoI	RAATTY	1 cut(s)	488
AspS9I	GGNCC	5 cut(s)	124, 155, 165, 207, 707
AsuC2I	CCSGG	3 cut(s)	168, 211, 651
AsuHPI	GGTGA	2 cut(s)	106, 743
AvaII	GGWCC	1 cut(s)	707
BaeGI	GKGCMC	2 cut(s)	320, 532
BamHI	GGATCC	1 cut(s)	357
BbrPI	CACGTG	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	282, 606
BccI	CCATC	2 cut(s)	455, 829
BciT130I	CCWGG	2 cut(s)	384, 602
BcnI	CCSGG	3 cut(s)	168, 211, 651
BcoDI	GTCTC	3 cut(s)	34, 268, 443
BglI	GCCNNNNNGGC	1 cut(s)	163
BisI	GCNGC	4 cut(s)	36, 293, 296, 620
BlsI	GCNGC	4 cut(s)	37, 294, 297, 621
Bme1390I	CCNGG	5 cut(s)	168, 211, 384, 602, 651
Bme18I	GGWCC	1 cut(s)	707
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	5 cut(s)	124, 155, 165, 207, 707
BmiI	GGNNCC	6 cut(s)	156, 345, 359, 381, 480, 709
BmrFI	CCNGG	5 cut(s)	168, 211, 384, 602, 651
BmsI	GCATC	1 cut(s)	624
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	344
BpuMI	CCSGG	3 cut(s)	168, 211, 651
BsaAI	YACGTR	2 cut(s)	309, 554
BsaBI	GATNNNNATC	1 cut(s)	762
BsaHI	GRCGYC	2 cut(s)	252, 302
BsaJI	CCNNGG	6 cut(s)	120, 179, 269, 383, 482, 600
BsaWI	WCCGGW	1 cut(s)	713
BsaXI	ACNNNNNCTCC	4 cut(s)	317, 347, 371, 401
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 133, 153, 216, 375, 601
Bse118I	RCCGGY	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	449
Bse8I	GATNNNNATC	1 cut(s)	762
BseBI	CCWGG	2 cut(s)	384, 602
BseDI	CCNNGG	6 cut(s)	120, 179, 269, 383, 482, 600
BseGI	GGATG	3 cut(s)	21, 47, 649
BseJI	GATNNNNATC	1 cut(s)	762
BseLI	CCNNNNNNNGG	6 cut(s)	31, 133, 153, 216, 375, 601
BseMI	GCAATG	1 cut(s)	449
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	2 cut(s)	320, 532
BseXI	GCAGC	2 cut(s)	282, 606
BseYI	CCCAGC	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	5 cut(s)	38, 125, 157, 166, 209
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	6 cut(s)	134, 147, 168, 210, 651, 714
BslFI	GGGAC	2 cut(s)	211, 693
BslI	CCNNNNNNNGG	6 cut(s)	31, 133, 153, 216, 375, 601
BsmAI	GTCTC	3 cut(s)	34, 268, 443
BsmBI	CGTCTC	2 cut(s)	34, 268
BsmFI	GGGAC	2 cut(s)	211, 693
BsnI	GGCC	5 cut(s)	38, 125, 157, 166, 209
Bsp1286I	GDGCHC	2 cut(s)	320, 532
Bsp143I	GATC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	482
BspACI	CCGC	5 cut(s)	35, 131, 293, 341, 366
BspANI	GGCC	5 cut(s)	38, 125, 157, 166, 209
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	6 cut(s)	156, 345, 359, 381, 480, 709
BspPI	GGATC	2 cut(s)	352, 365
BsrDI	GCAATG	1 cut(s)	449
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	6 cut(s)	120, 179, 269, 383, 482, 600
BssMI	GATC	1 cut(s)	357
BssNI	GRCGYC	2 cut(s)	252, 302
BssT1I	CCWWGG	1 cut(s)	482
Bst2UI	CCWGG	2 cut(s)	384, 602
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	660
BstACI	GRCGYC	2 cut(s)	252, 302
BstAPI	GCANNNNNTGC	2 cut(s)	439, 527
BstBAI	YACGTR	2 cut(s)	309, 554
BstC8I	GCNNGC	2 cut(s)	135, 300
BstDEI	CTNAG	1 cut(s)	737
BstDSI	CCRYGG	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	21, 47, 649
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	3 cut(s)	34, 268, 443
BstMBI	GATC	1 cut(s)	357
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 163, 439, 527
BstNI	CCWGG	2 cut(s)	384, 602
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	5 cut(s)	166, 209, 382, 600, 649
BstSLI	GKGCMC	2 cut(s)	320, 532
BstV1I	GCAGC	2 cut(s)	282, 606
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	357
BsuRI	GGCC	5 cut(s)	38, 125, 157, 166, 209
BtgI	CCRYGG	1 cut(s)	482
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	21, 47, 649
BtsIMutI	CAGTG	2 cut(s)	78, 733
Cac8I	GCNNGC	2 cut(s)	135, 300
CciI	TCATGA	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	5 cut(s)	124, 155, 165, 207, 707
CseI	GACGC	2 cut(s)	250, 291
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	8 cut(s)	108, 223, 280, 483, 569, 596, 779, 797
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	737
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
DraIII	CACNNNGTG	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
EciI	GGCGGA	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	309
EcoRII	CCWGG	2 cut(s)	382, 600
EcoT14I	CCWWGG	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	482
Esp3I	CGTCTC	2 cut(s)	34, 268
FaeI	CATG	8 cut(s)	111, 226, 283, 486, 572, 599, 782, 800
FaqI	GGGAC	2 cut(s)	211, 693
FatI	CATG	8 cut(s)	107, 222, 279, 482, 568, 595, 778, 796
FauI	CCCGC	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	4 cut(s)	36, 293, 296, 620
FokI	GGATG	3 cut(s)	8, 34, 656
Fsp4HI	GCNGC	4 cut(s)	36, 293, 296, 620
GluI	GCNGC	4 cut(s)	36, 293, 296, 620
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	344
HaeIII	GGCC	5 cut(s)	38, 125, 157, 166, 209
HapII	CCGG	6 cut(s)	134, 147, 168, 210, 651, 714
HgaI	GACGC	2 cut(s)	250, 291
Hin1I	GRCGYC	2 cut(s)	252, 302
Hin1II	CATG	8 cut(s)	111, 226, 283, 486, 572, 599, 782, 800
HinfI	GANTC	4 cut(s)	75, 274, 678, 717
HpaII	CCGG	6 cut(s)	134, 147, 168, 210, 651, 714
HphI	GGTGA	2 cut(s)	106, 743
Hpy166II	GTNNAC	5 cut(s)	288, 306, 530, 592, 734
Hpy188I	TCNGA	5 cut(s)	14, 548, 643, 753, 768
Hpy188III	TCNNGA	5 cut(s)	72, 223, 323, 352, 584
Hpy8I	GTNNAC	5 cut(s)	288, 306, 530, 592, 734
Hpy99I	CGWCG	4 cut(s)	58, 163, 254, 257
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4IV	ACGT	4 cut(s)	27, 252, 308, 553
HpyCH4V	TGCA	3 cut(s)	442, 521, 530
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 163, 439, 527
HpyF3I	CTNAG	1 cut(s)	737
HpySE526I	ACGT	4 cut(s)	27, 252, 308, 553
Hsp92I	GRCGYC	2 cut(s)	252, 302
Hsp92II	CATG	8 cut(s)	111, 226, 283, 486, 572, 599, 782, 800
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	5 cut(s)	343, 379, 464, 478, 627
Lsp1109I	GCAGC	2 cut(s)	282, 606
LweI	GCATC	1 cut(s)	624
MaeII	ACGT	4 cut(s)	27, 252, 308, 553
MaeIII	GTNAC	3 cut(s)	454, 740, 799
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	4 cut(s)	51, 572, 575, 677
MfeI	CAATTG	1 cut(s)	406
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	320, 532
MluCI	AATT	4 cut(s)	406, 488, 495, 516
MlyI	GAGTC	2 cut(s)	672, 726
MmeI	TCCRAC	3 cut(s)	213, 385, 621
MreI	CGCCGGCG	1 cut(s)	133
MroNI	GCCGGC	1 cut(s)	133
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	6 cut(s)	134, 147, 168, 210, 651, 714
MspR9I	CCNGG	5 cut(s)	168, 211, 384, 602, 651
MunI	CAATTG	1 cut(s)	406
MvaI	CCWGG	2 cut(s)	384, 602
MwoI	GCNNNNNNNGC	4 cut(s)	41, 163, 439, 527
NaeI	GCCGGC	1 cut(s)	135
NciI	CCSGG	3 cut(s)	168, 211, 651
NcoI	CCATGG	1 cut(s)	482
NdeII	GATC	1 cut(s)	357
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	8 cut(s)	111, 226, 283, 486, 572, 599, 782, 800
NlaIV	GGNNCC	6 cut(s)	156, 345, 359, 381, 480, 709
NmeAIII	GCCGAG	3 cut(s)	11, 204, 294
NmuCI	GTSAC	1 cut(s)	740
NspI	RCATGY	1 cut(s)	572
OliI	CACNNNNGTG	1 cut(s)	311
PagI	TCATGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	75, 274
PkrI	GCNGC	4 cut(s)	37, 294, 297, 621
PleI	GAGTC	2 cut(s)	672, 725
PmaCI	CACGTG	1 cut(s)	309
PmlI	CACGTG	1 cut(s)	309
PpsI	GAGTC	2 cut(s)	672, 725
Ppu21I	YACGTR	2 cut(s)	309, 554
Psp6I	CCWGG	2 cut(s)	382, 600
PspCI	CACGTG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	2 cut(s)	382, 600
PspN4I	GGNNCC	6 cut(s)	156, 345, 359, 381, 480, 709
PspPI	GGNCC	5 cut(s)	124, 155, 165, 207, 707
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	311
SatI	GCNGC	4 cut(s)	36, 293, 296, 620
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	5 cut(s)	124, 155, 165, 207, 707
SchI	GAGTC	2 cut(s)	672, 726
ScrFI	CCNGG	5 cut(s)	168, 211, 384, 602, 651
SduI	GDGCHC	2 cut(s)	320, 532
SfaNI	GCATC	1 cut(s)	624
SfiI	GGCCNNNNNGGCC	1 cut(s)	163
SgrAI	CRCCGGYG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	4 cut(s)	406, 488, 495, 516
SsiI	CCGC	5 cut(s)	35, 131, 293, 341, 366
StyD4I	CCNGG	5 cut(s)	166, 209, 382, 600, 649
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	454
TaiI	ACGT	4 cut(s)	30, 255, 311, 556
TaqI	TCGA	2 cut(s)	374, 720
TasI	AATT	4 cut(s)	406, 488, 495, 516
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	2 cut(s)	38, 295
TfiI	GAWTC	2 cut(s)	75, 274
TscAI	CASTG	2 cut(s)	85, 733
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	2 cut(s)	295, 619
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	3 cut(s)	239, 752, 785
TspGWI	ACGGA	2 cut(s)	440, 599
TspRI	CASTG	2 cut(s)	85, 733
VneI	GTGCAC	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	707
XapI	RAATTY	1 cut(s)	488
XceI	RCATGY	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	591
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.