Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002423.1

Orthogroup ID

OG0017857

Physical Location & Seq

Genomic Coordinates Forward (+)

14 .. 496

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002423.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggaagcagatgataatgtcgaaatggatatggatgaagaagagatgcaacttgttgaagatggaaaaagggtaacagaggtggatccagaacaaccaccaatgagaattgtgaagaactggaagagacctaaggagaggatgatccaatccagtgctgaaagggacatgacgatttcccctattactggggagcttgtccctaacaatgagatgtctgagcacatgaagatttccctcattgatccaagatacagagaacagaaagaaaggatgtttgctaagattcgggagactagtcttgttcttgcacaggacgatgagatctcaagaaacatagtgaaccttgcgcggatccgtcctgatatttttggttccaccgaggaggaagtttcaaatgctgtcaaggctgagattcaaaatcaagcgatatcactgtttggctccaattttgttgcagctggtcaacagtctattttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

160

Amino Acids

18.4

Weight (kDa)

4.61

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017857)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002423.1_g000001 Rmu_sc0005151.1_g000001 Rmu_sc0005683.1_g000001 Rmu_sc0034959.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229010 Rroxscaffold_4G00288770 Rroxscaffold_7G00179100
rosa_rugosa	Rorug01G0053800
rosa_samantha	Rh1BG056800 Rh1CG137400 Rh3AG254600 Rh5AG536900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	352
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	6 cut(s)	80, 93, 139, 239, 349, 362
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	59, 396, 419
AhlI	ACTAGT	1 cut(s)	296
AluBI	AGCT	2 cut(s)	196, 461
AluI	AGCT	2 cut(s)	196, 461
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	121, 287
AlwI	GGATC	6 cut(s)	80, 93, 139, 239, 349, 362
ApeKI	GCWGC	1 cut(s)	458
AspLEI	GCGC	1 cut(s)	352
AxyI	CCTNAGG	1 cut(s)	132
BamHI	GGATCC	2 cut(s)	85, 354
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	121, 287
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	1 cut(s)	297
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmiI	GGNNCC	4 cut(s)	87, 356, 376, 445
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	313
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	125, 153, 193
Bse21I	CCTNAGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	3 cut(s)	40, 147, 279
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMII	CTCAG	2 cut(s)	210, 402
BseNI	ACTGG	3 cut(s)	125, 153, 193
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	470
Bsh1236I	CGCG	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	179, 185
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	121, 287
BsmFI	GGGAC	2 cut(s)	179, 185
Bso31I	GGTCTC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	5 cut(s)	85, 144, 244, 324, 354
BspACI	CCGC	1 cut(s)	352
BspCNI	CTCAG	2 cut(s)	211, 403
BspFNI	CGCG	1 cut(s)	352
BspLI	GGNNCC	4 cut(s)	87, 356, 376, 445
BspPI	GGATC	6 cut(s)	80, 93, 139, 239, 349, 362
BspTNI	GGTCTC	1 cut(s)	121
BsrI	ACTGG	3 cut(s)	125, 153, 193
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	5 cut(s)	85, 144, 244, 324, 354
Bst4CI	ACNGT	2 cut(s)	438, 471
Bst6I	CTCTTC	2 cut(s)	36, 119
BstDEI	CTNAG	4 cut(s)	132, 219, 282, 411
BstF5I	GGATG	3 cut(s)	40, 147, 279
BstFNI	CGCG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	5 cut(s)	88, 147, 247, 327, 357
BstMAI	GTCTC	2 cut(s)	121, 287
BstMBI	GATC	5 cut(s)	85, 144, 244, 324, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	470
BstX2I	RGATCY	3 cut(s)	85, 324, 354
BstYI	RGATCY	3 cut(s)	85, 324, 354
Bsu36I	CCTNAGG	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	40, 147, 279
BtsIMutI	CAGTG	2 cut(s)	160, 434
CfoI	GCGC	1 cut(s)	352
CviAII	CATG	2 cut(s)	169, 226
CviJI	RGCY	4 cut(s)	196, 410, 444, 461
CviKI_1	RGCY	4 cut(s)	196, 410, 444, 461
DdeI	CTNAG	4 cut(s)	132, 219, 282, 411
DpnI	GATC	5 cut(s)	87, 146, 246, 326, 356
DpnII	GATC	5 cut(s)	85, 144, 244, 324, 354
Eam1104I	CTCTTC	2 cut(s)	36, 119
EarI	CTCTTC	2 cut(s)	36, 119
Eco31I	GGTCTC	1 cut(s)	121
Eco32I	GATATC	1 cut(s)	432
Eco81I	CCTNAGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	432
FaeI	CATG	2 cut(s)	172, 229
FaiI	YATR	4 cut(s)	32, 170, 227, 338
FaqI	GGGAC	2 cut(s)	179, 185
FatI	CATG	2 cut(s)	168, 225
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	3 cut(s)	47, 154, 286
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	2 cut(s)	172, 229
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	467
HindII	GTYRAC	1 cut(s)	467
HinfI	GANTC	2 cut(s)	286, 415
Hpy166II	GTNNAC	2 cut(s)	343, 467
Hpy188I	TCNGA	2 cut(s)	220, 482
Hpy188III	TCNNGA	4 cut(s)	89, 290, 330, 362
Hpy8I	GTNNAC	2 cut(s)	343, 467
HpyCH4III	ACNGT	2 cut(s)	438, 471
HpyCH4V	TGCA	3 cut(s)	49, 311, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	4 cut(s)	132, 219, 282, 411
Hsp92II	CATG	2 cut(s)	172, 229
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	5 cut(s)	85, 144, 244, 324, 354
LmnI	GCTCC	2 cut(s)	193, 449
LpnPI	CCDG	7 cut(s)	102, 106, 166, 174, 299, 375, 447
Lsp1109I	GCAGC	1 cut(s)	470
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	5 cut(s)	87, 146, 246, 326, 356
MboI	GATC	5 cut(s)	85, 144, 244, 324, 354
MboII	GAAGA	6 cut(s)	50, 53, 71, 127, 136, 241
MflI	RGATCY	3 cut(s)	85, 324, 354
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	2 cut(s)	108, 448
MnlI	CCTC	5 cut(s)	73, 132, 248, 376, 379
MspA1I	CMGCKG	1 cut(s)	461
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	1 cut(s)	407
NdeII	GATC	5 cut(s)	85, 144, 244, 324, 354
NlaIII	CATG	2 cut(s)	172, 229
NlaIV	GGNNCC	4 cut(s)	87, 356, 376, 445
PfeI	GAWTC	2 cut(s)	286, 415
PkrI	GCNGC	1 cut(s)	460
PspN4I	GGNNCC	4 cut(s)	87, 356, 376, 445
PsuI	RGATCY	3 cut(s)	85, 324, 354
PvuII	CAGCTG	1 cut(s)	461
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	5 cut(s)	85, 144, 244, 324, 354
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	5 cut(s)	84, 133, 198, 348, 463
SfaNI	GCATC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	2 cut(s)	108, 448
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	438, 471
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	108, 448
TfiI	GAWTC	2 cut(s)	286, 415
TscAI	CASTG	2 cut(s)	160, 441
TseI	GCWGC	1 cut(s)	458
TspDTI	ATGAA	2 cut(s)	51, 242
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	2 cut(s)	160, 441
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.