Rh3AG254600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017857
Physical Location & Seq
Reverse (-)
27770506 .. 27782951
12446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG254600.1

Sequence Viewer

Length: 366 bp
ATGGTTGTTGGGAAGGGGTGCACGAGGTTGACCTCGTGTGGTGATGGCGGAGTACTTTCAGTCATGGATGGTGGTGAAGTTGTGGTTGGCCTTAGGATCAGTGACGGAAGTGAGCCTGACGGCGGTGGCTGCTTTACTGGTGGCGGCGGCATTGCTGGGGCAGAGCTACTAAAGATAATGGCACCTTCTACGCGAAGACCTTCATCTCAAGCAGTAGCAATGGCCAAAAGAATGAGGGAAATTCAGCTGAGAGGGACAAGGTCTAGCAATACCAAGCGATCCAATGGAGCAACATCAAGGGGAACTTCAGTACAAGCTGCATCAAAGTTGTCATTGAAACGACAAAAGAGATTGAAGGTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.37

Weight (kDa)

10.91

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AccII CGCG 1 cut(s) 193
AciI CCGC 4 cut(s) 48, 123, 144, 147
AclWI GGATC 2 cut(s) 104, 273
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 2 cut(s) 54, 312
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 2 cut(s) 337, 355
AjuI GAANNNNNNNTTGG 2 cut(s) 69, 101
AluBI AGCT 3 cut(s) 166, 247, 317
AluI AGCT 3 cut(s) 166, 247, 317
Alw21I GWGCWC 1 cut(s) 23
Alw44I GTGCAC 1 cut(s) 19
AlwI GGATC 2 cut(s) 104, 273
AoxI GGCC 2 cut(s) 88, 222
ApaLI GTGCAC 1 cut(s) 19
ApeKI GCWGC 2 cut(s) 129, 317
ApoI RAATTY 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 53, 86
AxyI CCTNAGG 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 23
BalI TGGCCA 1 cut(s) 224
BanI GGYRCC 1 cut(s) 181
BauI CACGAG 2 cut(s) 22, 34
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 116, 304
BccI CCATC 2 cut(s) 38, 62
BceAI ACGGC 1 cut(s) 136
BfaI CTAG 1 cut(s) 264
BisI GCNGC 4 cut(s) 130, 145, 148, 318
BlsI GCNGC 4 cut(s) 131, 146, 149, 319
BmcAI AGTACT 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 183
BmsI GCATC 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 142
Bse21I CCTNAGG 1 cut(s) 92
Bse3DI GCAATG 2 cut(s) 150, 225
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 2 cut(s) 150, 225
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 23
BseXI GCAGC 2 cut(s) 116, 304
BseYI CCCAGC 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 193
BshFI GGCC 2 cut(s) 90, 224
BshNI GGYRCC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 23
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 2 cut(s) 90, 224
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 2 cut(s) 96, 278
BspACI CCGC 4 cut(s) 48, 123, 144, 147
BspANI GGCC 2 cut(s) 90, 224
BspCNI CTCAG 1 cut(s) 240
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 2 cut(s) 104, 273
BspT107I GGYRCC 1 cut(s) 181
BsrDI GCAATG 2 cut(s) 150, 225
BsrI ACTGG 1 cut(s) 142
BssMI GATC 2 cut(s) 96, 278
BssSI CACGAG 2 cut(s) 22, 34
Bst2BI CACGAG 2 cut(s) 22, 34
BstDEI CTNAG 2 cut(s) 92, 248
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 193
BstKTI GATC 2 cut(s) 99, 281
BstMBI GATC 2 cut(s) 96, 278
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 23
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 116, 304
BstV2I GAAGAC 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 92
BsuRI GGCC 2 cut(s) 90, 224
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 106
Csp6I GTAC 2 cut(s) 53, 311
CviAII CATG 1 cut(s) 64
CviJI RGCY 7 cut(s) 90, 115, 129, 166, 224, 247, 317
CviKI_1 RGCY 7 cut(s) 90, 115, 129, 166, 224, 247, 317
CviQI GTAC 2 cut(s) 53, 311
DdeI CTNAG 2 cut(s) 92, 248
DpnI GATC 2 cut(s) 98, 280
DpnII GATC 2 cut(s) 96, 278
EaeI YGGCCR 1 cut(s) 222
EciI GGCGGA 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 291
Eco81I CCTNAGG 1 cut(s) 92
FaeI CATG 1 cut(s) 67
FaiI YATR 1 cut(s) 65
FalI AAGNNNNNCTT 2 cut(s) 289, 321
FaqI GGGAC 1 cut(s) 268
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 130, 145, 148, 318
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 130, 145, 148, 318
FspBI CTAG 1 cut(s) 264
GluI GCNGC 4 cut(s) 130, 145, 148, 318
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 2 cut(s) 90, 224
Hin1II CATG 1 cut(s) 67
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HphI GGTGA 2 cut(s) 53, 86
Hpy166II GTNNAC 2 cut(s) 21, 30
Hpy8I GTNNAC 2 cut(s) 21, 30
HpyAV CCTTC 4 cut(s) 7, 195, 210, 349
HpyCH4V TGCA 2 cut(s) 21, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpyF3I CTNAG 2 cut(s) 92, 248
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 2 cut(s) 96, 278
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 3 cut(s) 123, 129, 141
Lsp1109I GCAGC 2 cut(s) 116, 304
LweI GCATC 1 cut(s) 329
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 98, 280
MboI GATC 2 cut(s) 96, 278
MboII GAAGA 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 23
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 1 cut(s) 240
MluNI TGGCCA 1 cut(s) 224
MnlI CCTC 4 cut(s) 18, 43, 228, 245
Mox20I TGGCCA 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 199
MscI TGGCCA 1 cut(s) 224
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 247
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 2 cut(s) 96, 278
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 199
PflFI GACNNNGTC 1 cut(s) 259
PkrI GCNGC 4 cut(s) 131, 146, 149, 319
PspFI CCCAGC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 183
PsyI GACNNNGTC 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 247
RsaI GTAC 2 cut(s) 54, 312
RsaNI GTAC 2 cut(s) 53, 311
SatI GCNGC 4 cut(s) 130, 145, 148, 318
Sau3AI GATC 2 cut(s) 96, 278
ScaI AGTACT 1 cut(s) 54
SduI GDGCHC 1 cut(s) 23
SetI ASST 9 cut(s) 29, 35, 168, 187, 202, 249, 263, 319, 360
SfaNI GCATC 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 1 cut(s) 240
SsiI CCGC 4 cut(s) 48, 123, 144, 147
SspMI CTAG 1 cut(s) 264
TasI AATT 1 cut(s) 240
TatI WGTACW 2 cut(s) 52, 310
TauI GCSGC 2 cut(s) 147, 150
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 2 cut(s) 129, 317
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 259
VneI GTGCAC 1 cut(s) 19
XapI RAATTY 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 199
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.