Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0002423.1_g000001 Rmu_sc0005151.1_g000001 Rmu_sc0005683.1_g000001 Rmu_sc0034959.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00229010 Rroxscaffold_4G00288770 Rroxscaffold_7G00179100 |
| rosa_rugosa | Rorug01G0053800 |
| rosa_samantha | Rh1BG056800 Rh1CG137400 Rh3AG254600 Rh5AG536900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 4 cut(s) | 38, 301, 314, 359 |
| AluBI | AGCT | 2 cut(s) | 108, 297 |
| AluI | AGCT | 2 cut(s) | 108, 297 |
| Alw21I | GWGCWC | 2 cut(s) | 348, 375 |
| Alw26I | GTCTC | 2 cut(s) | 20, 267 |
| Alw44I | GTGCAC | 2 cut(s) | 344, 371 |
| AoxI | GGCC | 1 cut(s) | 45 |
| ApaLI | GTGCAC | 2 cut(s) | 344, 371 |
| ApeKI | GCWGC | 2 cut(s) | 53, 336 |
| AsuHPI | GGTGA | 5 cut(s) | 67, 155, 298, 341, 434 |
| BaeGI | GKGCMC | 2 cut(s) | 348, 375 |
| BauI | CACGAG | 1 cut(s) | 65 |
| BbsI | GAAGAC | 2 cut(s) | 88, 393 |
| Bbv12I | GWGCWC | 2 cut(s) | 348, 375 |
| BbvI | GCAGC | 2 cut(s) | 40, 323 |
| BccI | CCATC | 2 cut(s) | 99, 185 |
| BceAI | ACGGC | 1 cut(s) | 391 |
| BcoDI | GTCTC | 2 cut(s) | 20, 267 |
| BisI | GCNGC | 2 cut(s) | 54, 337 |
| BlsI | GCNGC | 2 cut(s) | 55, 338 |
| BpiI | GAAGAC | 2 cut(s) | 88, 393 |
| BpmI | CTGGAG | 2 cut(s) | 302, 389 |
| Bpu10I | CCTNAGC | 1 cut(s) | 446 |
| BpuEI | CTTGAG | 1 cut(s) | 26 |
| BsaI | GGTCTC | 2 cut(s) | 20, 267 |
| BsaJI | CCNNGG | 1 cut(s) | 210 |
| Bse1I | ACTGG | 3 cut(s) | 179, 353, 406 |
| Bse3DI | GCAATG | 1 cut(s) | 398 |
| BseDI | CCNNGG | 1 cut(s) | 210 |
| BseMI | GCAATG | 1 cut(s) | 398 |
| BseMII | CTCAG | 1 cut(s) | 86 |
| BseNI | ACTGG | 3 cut(s) | 179, 353, 406 |
| BseSI | GKGCMC | 2 cut(s) | 348, 375 |
| BseXI | GCAGC | 2 cut(s) | 40, 323 |
| BsgI | GTGCAG | 1 cut(s) | 322 |
| BshFI | GGCC | 1 cut(s) | 47 |
| BsiHKAI | GWGCWC | 2 cut(s) | 348, 375 |
| BsmAI | GTCTC | 2 cut(s) | 20, 267 |
| BsnI | GGCC | 1 cut(s) | 47 |
| Bso31I | GGTCTC | 2 cut(s) | 20, 267 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 375 |
| Bsp143I | GATC | 3 cut(s) | 249, 303, 418 |
| BspANI | GGCC | 1 cut(s) | 47 |
| BspCNI | CTCAG | 1 cut(s) | 87 |
| BspHI | TCATGA | 1 cut(s) | 136 |
| BspTNI | GGTCTC | 2 cut(s) | 20, 267 |
| BsrDI | GCAATG | 1 cut(s) | 398 |
| BsrI | ACTGG | 3 cut(s) | 179, 353, 406 |
| BssECI | CCNNGG | 1 cut(s) | 210 |
| BssMI | GATC | 3 cut(s) | 249, 303, 418 |
| BssSI | CACGAG | 1 cut(s) | 65 |
| BssT1I | CCWWGG | 1 cut(s) | 210 |
| Bst2BI | CACGAG | 1 cut(s) | 65 |
| Bst4CI | ACNGT | 3 cut(s) | 128, 157, 343 |
| BstDEI | CTNAG | 2 cut(s) | 95, 446 |
| BstKTI | GATC | 3 cut(s) | 252, 306, 421 |
| BstMAI | GTCTC | 2 cut(s) | 20, 267 |
| BstMBI | GATC | 3 cut(s) | 249, 303, 418 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 53, 105 |
| BstSLI | GKGCMC | 2 cut(s) | 348, 375 |
| BstV1I | GCAGC | 2 cut(s) | 40, 323 |
| BstV2I | GAAGAC | 2 cut(s) | 88, 393 |
| BsuRI | GGCC | 1 cut(s) | 47 |
| BtgZI | GCGATG | 1 cut(s) | 393 |
| BtsIMutI | CAGTG | 4 cut(s) | 172, 254, 339, 346 |
| CciI | TCATGA | 1 cut(s) | 136 |
| CviAII | CATG | 1 cut(s) | 137 |
| CviJI | RGCY | 5 cut(s) | 47, 108, 297, 317, 336 |
| CviKI_1 | RGCY | 5 cut(s) | 47, 108, 297, 317, 336 |
| DdeI | CTNAG | 2 cut(s) | 95, 446 |
| DpnI | GATC | 3 cut(s) | 251, 305, 420 |
| DpnII | GATC | 3 cut(s) | 249, 303, 418 |
| Eco130I | CCWWGG | 1 cut(s) | 210 |
| Eco147I | AGGCCT | 1 cut(s) | 47 |
| Eco31I | GGTCTC | 2 cut(s) | 20, 267 |
| EcoT14I | CCWWGG | 1 cut(s) | 210 |
| ErhI | CCWWGG | 1 cut(s) | 210 |
| FaeI | CATG | 1 cut(s) | 140 |
| FaiI | YATR | 6 cut(s) | 15, 138, 183, 230, 363, 396 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 261, 293 |
| FatI | CATG | 1 cut(s) | 136 |
| Fnu4HI | GCNGC | 2 cut(s) | 54, 337 |
| Fsp4HI | GCNGC | 2 cut(s) | 54, 337 |
| GluI | GCNGC | 2 cut(s) | 54, 337 |
| GsuI | CTGGAG | 2 cut(s) | 302, 389 |
| HaeIII | GGCC | 1 cut(s) | 47 |
| Hin1II | CATG | 1 cut(s) | 140 |
| HinfI | GANTC | 1 cut(s) | 224 |
| HphI | GGTGA | 5 cut(s) | 67, 155, 298, 341, 434 |
| Hpy166II | GTNNAC | 4 cut(s) | 172, 187, 346, 373 |
| Hpy188I | TCNGA | 3 cut(s) | 10, 96, 112 |
| Hpy188III | TCNNGA | 3 cut(s) | 137, 281, 301 |
| Hpy8I | GTNNAC | 4 cut(s) | 172, 187, 346, 373 |
| Hpy99I | CGWCG | 1 cut(s) | 239 |
| HpyAV | CCTTC | 4 cut(s) | 134, 263, 287, 361 |
| HpyCH4III | ACNGT | 3 cut(s) | 128, 157, 343 |
| HpyCH4V | TGCA | 3 cut(s) | 339, 346, 373 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 53, 105 |
| HpyF3I | CTNAG | 2 cut(s) | 95, 446 |
| Hsp92II | CATG | 1 cut(s) | 140 |
| Kzo9I | GATC | 3 cut(s) | 249, 303, 418 |
| LmnI | GCTCC | 2 cut(s) | 283, 408 |
| LpnPI | CCDG | 5 cut(s) | 91, 160, 266, 334, 419 |
| Lsp1109I | GCAGC | 2 cut(s) | 40, 323 |
| MalI | GATC | 3 cut(s) | 251, 305, 420 |
| MboI | GATC | 3 cut(s) | 249, 303, 418 |
| MboII | GAAGA | 4 cut(s) | 64, 93, 125, 398 |
| MhlI | GDGCHC | 2 cut(s) | 348, 375 |
| MluCI | AATT | 1 cut(s) | 117 |
| MlyI | GAGTC | 1 cut(s) | 233 |
| MnlI | CCTC | 4 cut(s) | 58, 325, 328, 402 |
| MseI | TTAA | 1 cut(s) | 120 |
| MslI | CAYNNNNRTG | 2 cut(s) | 141, 378 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 53, 105 |
| NdeII | GATC | 3 cut(s) | 249, 303, 418 |
| NlaIII | CATG | 1 cut(s) | 140 |
| PagI | TCATGA | 1 cut(s) | 136 |
| PceI | AGGCCT | 1 cut(s) | 47 |
| PkrI | GCNGC | 2 cut(s) | 55, 338 |
| PleI | GAGTC | 1 cut(s) | 232 |
| PpsI | GAGTC | 1 cut(s) | 232 |
| RseI | CAYNNNNRTG | 2 cut(s) | 141, 378 |
| SaqAI | TTAA | 1 cut(s) | 120 |
| SatI | GCNGC | 2 cut(s) | 54, 337 |
| Sau3AI | GATC | 3 cut(s) | 249, 303, 418 |
| SchI | GAGTC | 1 cut(s) | 233 |
| SduI | GDGCHC | 2 cut(s) | 348, 375 |
| SetI | ASST | 9 cut(s) | 24, 110, 145, 279, 299, 331, 372, 447, 455 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 141, 378 |
| SmlI | CTYRAG | 1 cut(s) | 41 |
| SmoI | CTYRAG | 1 cut(s) | 41 |
| Sse9I | AATT | 1 cut(s) | 117 |
| SseBI | AGGCCT | 1 cut(s) | 47 |
| StuI | AGGCCT | 1 cut(s) | 47 |
| StyI | CCWWGG | 1 cut(s) | 210 |
| TaaI | ACNGT | 3 cut(s) | 128, 157, 343 |
| TaqI | TCGA | 1 cut(s) | 248 |
| TaqII | GACCGA | 1 cut(s) | 44 |
| TasI | AATT | 1 cut(s) | 117 |
| Tru1I | TTAA | 1 cut(s) | 120 |
| Tru9I | TTAA | 1 cut(s) | 120 |
| TscAI | CASTG | 4 cut(s) | 179, 261, 346, 353 |
| TseI | GCWGC | 2 cut(s) | 53, 336 |
| TspDTI | ATGAA | 2 cut(s) | 125, 153 |
| TspRI | CASTG | 4 cut(s) | 179, 261, 346, 353 |
| VneI | GTGCAC | 2 cut(s) | 344, 371 |