Rmu_sc0005683.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005683.1
OG0017857
Physical Location & Seq
Reverse (-)
526 .. 1366
841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005683.1_g000001.1.cds

Sequence Viewer

Length: 612 bp
atgtccctggctcgcttttctttatgcctctcgctgttggccatgatgatcgcgagctgttcctcgatgcttgccccctctgggatgggaataggcataaactcatcattaatggcagtattggctgcgttgctagggcgttacccttgcttggctggttctgtaaccgttgtggtcgcggcactaccgtcggctcccgagatcatcttaaagattttcccctggcatctcaatgatggcaaacaaatgcaaaaagactctagtgtagtcccactgggcgtgccaaaatgttttgttttgaagcccgctggtcaacagtctcttttctgcgcgggcgtgccagcaccgttcgggtgcgatcgagtagagcgagaaccaccgggaagtagagagaacttgctaaagcgtgactttagcttggctgcgttgctagggcgttacccttgcttggctggttctgtaaccgttgtggtcgcggcactaccgtcggctcccgagatcatcttaaagattttcccctggcatctcaatgatggcaaacaaatgcaaaaagactctagtgtagtcccactgggcgtgccaaaatgttttattttgaagcccggtggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

21.37

Weight (kDa)

9.11

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 53, 179, 332, 476
AciI CCGC 4 cut(s) 179, 306, 332, 476
AcoI YGGCCR 1 cut(s) 39
AfiI CCNNNNNNNGG 3 cut(s) 81, 151, 448
AgsI TTSAA 2 cut(s) 301, 598
AjnI CCWGG 3 cut(s) 6, 221, 518
AluBI AGCT 2 cut(s) 57, 417
AluI AGCT 2 cut(s) 57, 417
Alw26I GTCTC 1 cut(s) 324
Ama87I CYCGRG 2 cut(s) 197, 494
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 125, 422
AseI ATTAAT 1 cut(s) 110
AspLEI GCGC 1 cut(s) 332
AsuC2I CCSGG 2 cut(s) 381, 603
AvaI CYCGRG 2 cut(s) 197, 494
BalI TGGCCA 1 cut(s) 41
BbvI GCAGC 2 cut(s) 112, 409
BccI CCATC 3 cut(s) 79, 230, 527
BcgI CGANNNNNNTGC 4 cut(s) 171, 205, 468, 502
BciT130I CCWGG 3 cut(s) 8, 223, 520
BcnI CCSGG 2 cut(s) 381, 603
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 4 cut(s) 134, 261, 431, 558
BisI GCNGC 4 cut(s) 126, 180, 423, 477
BlsI GCNGC 4 cut(s) 127, 181, 424, 478
Bme1390I CCNGG 5 cut(s) 8, 223, 381, 520, 603
BmeT110I CYCGRG 2 cut(s) 197, 494
BmiI GGNNCC 2 cut(s) 195, 492
BmrFI CCNGG 5 cut(s) 8, 223, 381, 520, 603
BmrI ACTGGG 2 cut(s) 284, 581
BmsI GCATC 3 cut(s) 57, 235, 532
BmuI ACTGGG 2 cut(s) 284, 581
BpuMI CCSGG 2 cut(s) 381, 603
BsaJI CCNNGG 3 cut(s) 6, 221, 518
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 151, 448
Bse1I ACTGG 2 cut(s) 279, 576
BseBI CCWGG 3 cut(s) 8, 223, 520
BseDI CCNNGG 3 cut(s) 6, 221, 518
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 3 cut(s) 81, 151, 448
BseNI ACTGG 2 cut(s) 279, 576
BseXI GCAGC 2 cut(s) 112, 409
Bsh1236I CGCG 4 cut(s) 53, 179, 332, 476
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 361
BsiHKCI CYCGRG 2 cut(s) 197, 494
BsiSI CCGG 2 cut(s) 380, 603
BslFI GGGAC 2 cut(s) 254, 551
BslI CCNNNNNNNGG 3 cut(s) 81, 151, 448
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 2 cut(s) 254, 551
BsnI GGCC 1 cut(s) 41
BsoBI CYCGRG 2 cut(s) 197, 494
Bsp143I GATC 4 cut(s) 48, 201, 358, 498
Bsp68I TCGCGA 1 cut(s) 53
BspACI CCGC 4 cut(s) 179, 306, 332, 476
BspANI GGCC 1 cut(s) 41
BspFNI CGCG 4 cut(s) 53, 179, 332, 476
BspLI GGNNCC 2 cut(s) 195, 492
BsrI ACTGG 2 cut(s) 279, 576
BssECI CCNNGG 3 cut(s) 6, 221, 518
BssMI GATC 4 cut(s) 48, 201, 358, 498
Bst2UI CCWGG 3 cut(s) 8, 223, 520
Bst4CI ACNGT 6 cut(s) 169, 189, 318, 348, 466, 486
BstC8I GCNNGC 9 cut(s) 13, 55, 72, 281, 306, 334, 338, 342, 578
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 4 cut(s) 53, 179, 332, 476
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 4 cut(s) 51, 204, 361, 501
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 4 cut(s) 48, 201, 358, 498
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNI CCWGG 3 cut(s) 8, 223, 520
BstSCI CCNGG 5 cut(s) 6, 221, 379, 518, 601
BstUI CGCG 4 cut(s) 53, 179, 332, 476
BstV1I GCAGC 2 cut(s) 112, 409
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 272, 569
BtuMI TCGCGA 1 cut(s) 53
Cac8I GCNNGC 9 cut(s) 13, 55, 72, 281, 306, 334, 338, 342, 578
CfoI GCGC 1 cut(s) 332
CviAII CATG 1 cut(s) 43
DpnI GATC 4 cut(s) 50, 203, 360, 500
DpnII GATC 4 cut(s) 48, 201, 358, 498
EaeI YGGCCR 1 cut(s) 39
Eco88I CYCGRG 2 cut(s) 197, 494
EcoRII CCWGG 3 cut(s) 6, 221, 518
FaeI CATG 1 cut(s) 46
FaiI YATR 3 cut(s) 25, 44, 98
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 2 cut(s) 254, 551
FatI CATG 1 cut(s) 42
FauI CCCGC 2 cut(s) 313, 325
Fnu4HI GCNGC 4 cut(s) 126, 180, 423, 477
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 4 cut(s) 126, 180, 423, 477
FspBI CTAG 4 cut(s) 134, 261, 431, 558
GlaI GCGC 1 cut(s) 331
GluI GCNGC 4 cut(s) 126, 180, 423, 477
HaeIII GGCC 1 cut(s) 41
HapII CCGG 2 cut(s) 380, 603
HhaI GCGC 1 cut(s) 332
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HinfI GANTC 2 cut(s) 257, 554
HpaII CCGG 2 cut(s) 380, 603
Hpy166II GTNNAC 1 cut(s) 314
Hpy188III TCNNGA 3 cut(s) 52, 197, 494
Hpy8I GTNNAC 1 cut(s) 314
Hpy99I CGWCG 2 cut(s) 193, 490
HpyCH4III ACNGT 6 cut(s) 169, 189, 318, 348, 466, 486
HpyCH4V TGCA 2 cut(s) 250, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 4 cut(s) 48, 201, 358, 498
LmnI GCTCC 2 cut(s) 199, 496
Lsp1109I GCAGC 2 cut(s) 112, 409
LweI GCATC 3 cut(s) 57, 235, 532
MaeI CTAG 4 cut(s) 134, 261, 431, 558
MaeIII GTNAC 5 cut(s) 140, 163, 407, 437, 460
MalI GATC 4 cut(s) 50, 203, 360, 500
MboI GATC 4 cut(s) 48, 201, 358, 498
MlsI TGGCCA 1 cut(s) 41
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 2 cut(s) 251, 548
MnlI CCTC 3 cut(s) 38, 73, 88
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 3 cut(s) 110, 209, 506
MslI CAYNNNNRTG 2 cut(s) 231, 528
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 2 cut(s) 380, 603
MspR9I CCNGG 5 cut(s) 8, 223, 381, 520, 603
MvaI CCWGG 3 cut(s) 8, 223, 520
MvnI CGCG 4 cut(s) 53, 179, 332, 476
MwoI GCNNNNNNNGC 1 cut(s) 122
NciI CCSGG 2 cut(s) 381, 603
NdeII GATC 4 cut(s) 48, 201, 358, 498
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 2 cut(s) 195, 492
NmuCI GTSAC 1 cut(s) 407
NruI TCGCGA 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PkrI GCNGC 4 cut(s) 127, 181, 424, 478
Ple19I CGATCG 1 cut(s) 361
PleI GAGTC 2 cut(s) 251, 548
PpsI GAGTC 2 cut(s) 251, 548
PshBI ATTAAT 1 cut(s) 110
Psp6I CCWGG 3 cut(s) 6, 221, 518
PspGI CCWGG 3 cut(s) 6, 221, 518
PspN4I GGNNCC 2 cut(s) 195, 492
PvuI CGATCG 1 cut(s) 361
RruI TCGCGA 1 cut(s) 53
RseI CAYNNNNRTG 2 cut(s) 231, 528
SaqAI TTAA 3 cut(s) 110, 209, 506
SatI GCNGC 4 cut(s) 126, 180, 423, 477
Sau3AI GATC 4 cut(s) 48, 201, 358, 498
SchI GAGTC 2 cut(s) 251, 548
ScrFI CCNGG 5 cut(s) 8, 223, 381, 520, 603
SetI ASST 2 cut(s) 59, 419
SfaNI GCATC 3 cut(s) 57, 235, 532
SmiMI CAYNNNNRTG 2 cut(s) 231, 528
SsiI CCGC 4 cut(s) 179, 306, 332, 476
SspMI CTAG 4 cut(s) 134, 261, 431, 558
StyD4I CCNGG 5 cut(s) 6, 221, 379, 518, 601
TaaI ACNGT 6 cut(s) 169, 189, 318, 348, 466, 486
TaqI TCGA 2 cut(s) 65, 361
TauI GCSGC 2 cut(s) 182, 479
Tru1I TTAA 3 cut(s) 110, 209, 506
Tru9I TTAA 3 cut(s) 110, 209, 506
TscAI CASTG 2 cut(s) 279, 576
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 2 cut(s) 125, 422
Tsp45I GTSAC 1 cut(s) 407
TspRI CASTG 2 cut(s) 279, 576
VspI ATTAAT 1 cut(s) 110
XspI CTAG 4 cut(s) 134, 261, 431, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.