Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034959.1

Orthogroup ID

OG0017857

Physical Location & Seq

Genomic Coordinates Forward (+)

707 .. 1385

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034959.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgatccaatccagtgctgaaagggacatgacgatttcccctattactggggagcttgtccctaacaatgagatgtctgagcacatgaagatttccctcattgatccaagatacagagaacagaaagaaaggatgtttgctaagattcgggagactagtcttgttcttgcacaggacgatgagatctcaagaaacatagtgaaccttgcgcggatccgtcctgatatttttggttccaccgaggaggaagtttcaaatgctgtcaaggctgagattcaaaatcaagcgatatcactgtttggctccaattttgttgcagctggtcaacagtctattttctgcgcgggcgtgccagcaccgttctggtacgatcgagcagagcgggaaccaccgggaagtagagagaactggctaaagcgtgactttagcttggctgggttgctagggcattacccttggttggctggttctgtaaccgttgtggtcgcggcactaccgtcggctcccgaggagactaggagcatagtacgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

177

Amino Acids

19.78

Weight (kDa)

5.16

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017857)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002423.1_g000001 Rmu_sc0005151.1_g000001 Rmu_sc0005683.1_g000001 Rmu_sc0034959.1_g000002
rosa_roxburghii	Rroxscaffold_3G00229010 Rroxscaffold_4G00288770 Rroxscaffold_7G00179100
rosa_rugosa	Rorug01G0053800
rosa_samantha	Rh1BG056800 Rh1CG137400 Rh3AG254600 Rh5AG536900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	382
AccII	CGCG	3 cut(s)	211, 344, 488
AciI	CCGC	4 cut(s)	211, 344, 382, 488
AclWI	GGATC	3 cut(s)	98, 208, 221
AfaI	GTAC	2 cut(s)	368, 528
AfiI	CCNNNNNNNGG	2 cut(s)	47, 460
AgsI	TTSAA	2 cut(s)	255, 278
AhlI	ACTAGT	1 cut(s)	155
AluBI	AGCT	3 cut(s)	55, 320, 429
AluI	AGCT	3 cut(s)	55, 320, 429
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	146, 506
AlwI	GGATC	3 cut(s)	98, 208, 221
Ama87I	CYCGRG	1 cut(s)	506
ApeKI	GCWGC	1 cut(s)	317
AspLEI	GCGC	2 cut(s)	211, 344
AsuC2I	CCSGG	1 cut(s)	393
AvaI	CYCGRG	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	329
BcgI	CGANNNNNNTGC	2 cut(s)	480, 514
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	146, 506
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	3 cut(s)	156, 443, 516
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	2 cut(s)	318, 489
BlsI	GCNGC	2 cut(s)	319, 490
Bme1390I	CCNGG	1 cut(s)	393
BmeT110I	CYCGRG	1 cut(s)	506
BmiI	GGNNCC	5 cut(s)	215, 235, 304, 387, 504
BmrFI	CCNGG	1 cut(s)	393
BmrI	ACTGGG	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	393
BsaJI	CCNNGG	3 cut(s)	240, 455, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 460
Bse1I	ACTGG	3 cut(s)	12, 52, 413
BseDI	CCNNGG	3 cut(s)	240, 455, 507
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	47, 460
BseMII	CTCAG	2 cut(s)	69, 261
BseNI	ACTGG	3 cut(s)	12, 52, 413
BseRI	GAGGAG	2 cut(s)	257, 524
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	434
Bsh1236I	CGCG	3 cut(s)	211, 344, 488
Bsh1285I	CGRYCG	1 cut(s)	373
BsiEI	CGRYCG	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	2 cut(s)	38, 44
BslI	CCNNNNNNNGG	2 cut(s)	47, 460
BsmAI	GTCTC	2 cut(s)	146, 506
BsmFI	GGGAC	2 cut(s)	38, 44
BsoBI	CYCGRG	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	5 cut(s)	3, 103, 183, 213, 370
BspACI	CCGC	4 cut(s)	211, 344, 382, 488
BspCNI	CTCAG	2 cut(s)	70, 262
BspFNI	CGCG	3 cut(s)	211, 344, 488
BspLI	GGNNCC	5 cut(s)	215, 235, 304, 387, 504
BspPI	GGATC	3 cut(s)	98, 208, 221
BsrBI	CCGCTC	1 cut(s)	382
BsrI	ACTGG	3 cut(s)	12, 52, 413
BssECI	CCNNGG	3 cut(s)	240, 455, 507
BssMI	GATC	5 cut(s)	3, 103, 183, 213, 370
BssT1I	CCWWGG	1 cut(s)	455
Bst4CI	ACNGT	5 cut(s)	297, 330, 360, 478, 498
BstC8I	GCNNGC	3 cut(s)	346, 350, 354
BstDEI	CTNAG	3 cut(s)	78, 141, 270
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	3 cut(s)	211, 344, 488
BstHHI	GCGC	2 cut(s)	211, 344
BstKTI	GATC	5 cut(s)	6, 106, 186, 216, 373
BstMAI	GTCTC	2 cut(s)	146, 506
BstMBI	GATC	5 cut(s)	3, 103, 183, 213, 370
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	391
BstUI	CGCG	3 cut(s)	211, 344, 488
BstV1I	GCAGC	1 cut(s)	329
BstX2I	RGATCY	2 cut(s)	183, 213
BstYI	RGATCY	2 cut(s)	183, 213
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	19, 293
Cac8I	GCNNGC	3 cut(s)	346, 350, 354
CfoI	GCGC	2 cut(s)	211, 344
Csp6I	GTAC	2 cut(s)	367, 527
CviAII	CATG	2 cut(s)	28, 85
CviJI	RGCY	9 cut(s)	55, 269, 303, 320, 412, 429, 434, 464, 503
CviKI_1	RGCY	9 cut(s)	55, 269, 303, 320, 412, 429, 434, 464, 503
CviQI	GTAC	2 cut(s)	367, 527
DdeI	CTNAG	3 cut(s)	78, 141, 270
DpnI	GATC	5 cut(s)	5, 105, 185, 215, 372
DpnII	GATC	5 cut(s)	3, 103, 183, 213, 370
Eco130I	CCWWGG	1 cut(s)	455
Eco32I	GATATC	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	506
EcoRV	GATATC	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	2 cut(s)	31, 88
FaiI	YATR	4 cut(s)	29, 86, 197, 524
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	2 cut(s)	38, 44
FatI	CATG	2 cut(s)	27, 84
FauI	CCCGC	2 cut(s)	337, 375
Fnu4HI	GCNGC	2 cut(s)	318, 489
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	318, 489
FspBI	CTAG	3 cut(s)	156, 443, 516
GlaI	GCGC	2 cut(s)	210, 343
GluI	GCNGC	2 cut(s)	318, 489
GsaI	CCCAGC	1 cut(s)	438
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	2 cut(s)	211, 344
Hin1II	CATG	2 cut(s)	31, 88
Hin6I	GCGC	2 cut(s)	209, 342
HinP1I	GCGC	2 cut(s)	209, 342
HincII	GTYRAC	1 cut(s)	326
HindII	GTYRAC	1 cut(s)	326
HinfI	GANTC	2 cut(s)	145, 274
HpaII	CCGG	1 cut(s)	392
Hpy166II	GTNNAC	2 cut(s)	202, 326
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	4 cut(s)	149, 189, 221, 506
Hpy8I	GTNNAC	2 cut(s)	202, 326
Hpy99I	CGWCG	1 cut(s)	502
HpyCH4III	ACNGT	5 cut(s)	297, 330, 360, 478, 498
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	2 cut(s)	170, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	3 cut(s)	78, 141, 270
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	2 cut(s)	31, 88
HspAI	GCGC	2 cut(s)	209, 342
Kzo9I	GATC	5 cut(s)	3, 103, 183, 213, 370
LmnI	GCTCC	4 cut(s)	52, 308, 508, 519
Lsp1109I	GCAGC	1 cut(s)	329
MaeI	CTAG	3 cut(s)	156, 443, 516
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	2 cut(s)	419, 472
MalI	GATC	5 cut(s)	5, 105, 185, 215, 372
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	5 cut(s)	3, 103, 183, 213, 370
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	2 cut(s)	183, 213
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	1 cut(s)	307
MnlI	CCTC	4 cut(s)	107, 235, 238, 502
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	393
MvnI	CGCG	3 cut(s)	211, 344, 488
MwoI	GCNNNNNNNGC	1 cut(s)	266
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	5 cut(s)	3, 103, 183, 213, 370
NlaIII	CATG	2 cut(s)	31, 88
NlaIV	GGNNCC	5 cut(s)	215, 235, 304, 387, 504
NmuCI	GTSAC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	145, 274
PkrI	GCNGC	2 cut(s)	319, 490
Ple19I	CGATCG	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	434
PspN4I	GGNNCC	5 cut(s)	215, 235, 304, 387, 504
PsuI	RGATCY	2 cut(s)	183, 213
PvuI	CGATCG	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	368, 528
RsaNI	GTAC	2 cut(s)	367, 527
SatI	GCNGC	2 cut(s)	318, 489
Sau3AI	GATC	5 cut(s)	3, 103, 183, 213, 370
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	5 cut(s)	57, 207, 322, 431, 532
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	4 cut(s)	211, 344, 382, 488
SspMI	CTAG	3 cut(s)	156, 443, 516
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	5 cut(s)	297, 330, 360, 478, 498
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	1 cut(s)	373
TasI	AATT	1 cut(s)	307
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	2 cut(s)	145, 274
TscAI	CASTG	2 cut(s)	19, 300
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	19, 300
XcmI	CCANNNNNNNNNTGG	1 cut(s)	360
XspI	CTAG	3 cut(s)	156, 443, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.