Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002490.1

Orthogroup ID

OG0008604

Physical Location & Seq

Genomic Coordinates Forward (+)

95507 .. 101138

Gene Structure 5632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

atggcttcttaccggccattcccgcctcaaccggcgtttccgccaccgccgccgaatcaaaaccccatagcgccgccgccacgtggcaatcagtataaccagaattggggttataatgccggtggcggcggcggcgatggggctgtgccggctgctccttcttcatacccccaaaactacattcaccaccctcatagtaattatggtcctcctagagctcagcatcctcacccaccaccgcaatactcgtacccgccgccaccgcctcctccgccggactcttcatacccacctccaccgcctcctcaagctcctcccgggaaaaatatgcccctacagcctccacaagccccaatgtactaccagtctaactctcaatatgctcagtatagtcaccaggcaatgcagccaccgccgcctctgccgccgcctttgtctcctagttcgtctattccaccgccacccccgcctccaaattctccaccacctcccccgccaccgcagagtagggagagggagagtggtttcgataaggggccagactacaaaggggcttccaaggatgtgggagcttctgctgccaagcgggaacatgggcattcgaaccatcatgggattccccataaacacaagccccctgttccgttggtgccagtgaagaagtctaatgggccgccggggagagtggagacggaggaagagaggaggttgaggaagaagagggagtttgagaagcaaagacaagaggagaagcataggcagcagctgaaggagtcccaaaattcagttttgcagaagacacatatgttgtcgtctgggaagggacatggatcgattgcagggtcacgaatgggggaaaggagggccactccattcttgagtggtgagagggctgaaaataggctaaagaagccaacaacatttgtgtgtaagttgaaattccggaacgaacttccagatccaagtgcacaacccaagctcatatatacaaaatacacgattacatcgttagagaaaaattacaagcccaagctttttgttgagccagatcttgggatacctcttgacctgcttgacctcagtgtgtacaatcctcctcccggtcctagaccaccacttgcaccagaagacgaggaattattgcgtgatgatgtagcagtgacccctgttaaaaaagatggcatcagaagaaaagagcgacctacggataaaggagttgcatggctggttaaaacacaatatatttctcctattagcatggattcagcaaaacagtctctaacagaaaaacaagcaaaagaactgcgggaaatgaagggaggacgtaatcttttggacaaccttaatgatagggagaggcagataaaggaaattgaggcatcctttgaggcctgcaagtcgcgccctgttcatgcaaccaataaaaatctataccctgttgagattctacctcttttgcctgattttgagcggtatgatgaccaattcgtccttgctgcatttgatggtgctcccactgctgattcagaaatctacagcaagttggatcagtctgatcatgatgtctgtgaatcaagggcaattatgaaaagttataaggtaacaggtgcagacccagctaatccagacaaatttttggcgtacatggtcccttctccaaacgagctatcaaaggatccatatgatgaatctgaagatgtttcatattcttgggttcgcgagtatcagtatgatgtaagaggtgacgatgttgatgatctcaccacataccttgtatcatttgatgaagatgaagcacgttatgcgcctcttccagcaaagcttgttttgaggaaaaaaagggccaaagagggaagatccactgatgaggtcgaacattttcctgcaccttcaagagtgactgtcaggcggaggtcaactgtttctgcaattgaactaaaggatgcaggggattattcaaggggagctctatcaaattcgaaaagaagagggtttgataatgaagatgcccttgaaagaccacagaagagggtgcgacaccaagatgttgatgaatatagtggtggtgacgatgatttatctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009909 GO:0009910 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0019538 GO:0030880 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04011 map04011

Pfam Domains

Protein Families

Paf1

Protein Analysis

695

Amino Acids

77.75

Weight (kDa)

8.07

Isoelectric Point (pI)

65.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Paf1	PF03985	308 - 638	1.5e-50	Paf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79730
fragaria_vesca	FvH4_6g32381 FvH4_6g32381
malus_domestica	MD09G1202900.v1.1 MD17G1184000.v1.1
prunus_persica	Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.1G178600_v2.0.a1 Prupe.3G059100_v2.0.a1
pyrus_communis	pycom17g19340
rosa_chinensis	RchiOBHm_Chr2g0140531
rosa_laevigata	RLG00000019875
rosa_multiflora	Rmu_sc0002490.1_g000024
rosa_roxburghii	Rroxscaffold_153G00436660 Rroxscaffold_2G00104720
rosa_rugosa	Rorug02G0363400 Rorug02G0363500
rosa_samantha	Rh2AG414300 Rh2BG424200 Rh2CG400700 Rh2DG434200
rosa_wichuraiana	Rw2G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	114, 1596
AasI	GACNNNNNNGTC	1 cut(s)	1487
Acc36I	ACCTGC	1 cut(s)	1077
AccB1I	GGYRCC	1 cut(s)	649
AccB7I	CCANNNNNTGG	1 cut(s)	1052
AccBSI	CCGCTC	1 cut(s)	1471
AccII	CGCG	2 cut(s)	1402, 1719
AccIII	TCCGGA	1 cut(s)	942
AclWI	GGATC	6 cut(s)	838, 953, 1554, 1670, 1683, 1851
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	5 cut(s)	475, 781, 938, 1631, 1975
AcuI	CTGAAG	2 cut(s)	788, 1713
AcvI	CACGTG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	251, 359, 1088, 1643
AfiI	CCNNNNNNNGG	4 cut(s)	83, 106, 1052, 1100
AgsI	TTSAA	5 cut(s)	937, 1893, 1934, 1959, 2015
AjnI	CCWGG	1 cut(s)	396
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
Alw21I	GWGCWC	4 cut(s)	220, 970, 1513, 1969
Alw26I	GTCTC	3 cut(s)	441, 683, 1281
Alw44I	GTGCAC	1 cut(s)	966
AlwI	GGATC	6 cut(s)	838, 953, 1554, 1670, 1683, 1851
AlwNI	CAGNNNCTG	1 cut(s)	766
Ama87I	CYCGRG	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	942
AoxI	GGCC	6 cut(s)	14, 536, 671, 864, 1389, 1842
ApaLI	GTGCAC	1 cut(s)	966
ApeKI	GCWGC	6 cut(s)	152, 406, 578, 760, 763, 1496
ApoI	RAATTY	5 cut(s)	475, 781, 938, 1631, 1975
Asp700I	GAANNNNTTC	1 cut(s)	1878
AspLEI	GCGC	3 cut(s)	73, 1404, 1807
AspS9I	GGNCC	7 cut(s)	206, 536, 671, 864, 1103, 1648, 1842
AsuC2I	CCSGG	4 cut(s)	318, 319, 678, 1101
AsuHPI	GGTGA	7 cut(s)	176, 221, 386, 896, 1753, 1754, 2078
AsuII	TTCGAA	2 cut(s)	602, 1979
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	3 cut(s)	206, 1103, 1648
BaeGI	GKGCMC	1 cut(s)	970
BamHI	GGATCC	1 cut(s)	1675
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	2 cut(s)	220, 1969
BbrPI	CACGTG	1 cut(s)	83
BbsI	GAAGAC	2 cut(s)	803, 1134
Bbv12I	GWGCWC	4 cut(s)	220, 970, 1513, 1969
BbvI	GCAGC	6 cut(s)	139, 418, 565, 772, 775, 1483
BccI	CCATC	4 cut(s)	131, 615, 1172, 1499
BciT130I	CCWGG	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	1050
BclI	TGATCA	1 cut(s)	1555
BcnI	CCSGG	4 cut(s)	318, 319, 678, 1101
BcoDI	GTCTC	3 cut(s)	441, 683, 1281
BfaI	CTAG	3 cut(s)	213, 441, 1107
BfmI	CTRYAG	2 cut(s)	335, 1534
BfoI	RGCGCY	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	1077
BfuI	GTATCC	1 cut(s)	1050
BglII	AGATCT	1 cut(s)	1048
BlpI	GCTNAGC	1 cut(s)	219
Bme1390I	CCNGG	5 cut(s)	318, 319, 398, 678, 1101
Bme18I	GGWCC	3 cut(s)	206, 1103, 1648
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	7 cut(s)	206, 536, 671, 864, 1103, 1648, 1842
BmiI	GGNNCC	4 cut(s)	537, 651, 1650, 1677
BmrFI	CCNGG	5 cut(s)	318, 319, 398, 678, 1101
BmsI	GCATC	5 cut(s)	232, 1191, 1388, 1933, 1996
BpiI	GAAGAC	2 cut(s)	803, 1134
BplI	GAGNNNNNCTC	2 cut(s)	853, 885
Bpu1102I	GCTNAGC	1 cut(s)	219
Bpu14I	TTCGAA	2 cut(s)	602, 1979
BpuEI	CTTGAG	2 cut(s)	291, 898
BpuMI	CCSGG	4 cut(s)	318, 319, 678, 1101
Bsa29I	ATCGAT	1 cut(s)	833
BsaAI	YACGTR	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	317, 558, 677
BsaWI	WCCGGW	1 cut(s)	942
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 106, 1052, 1100
Bse118I	RCCGGY	4 cut(s)	12, 31, 119, 148
Bse1I	ACTGG	2 cut(s)	364, 653
Bse3DI	GCAATG	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	942
BseBI	CCWGG	1 cut(s)	398
BseCI	ATCGAT	1 cut(s)	833
BseDI	CCNNGG	3 cut(s)	317, 558, 677
BseGI	GGATG	4 cut(s)	223, 568, 1379, 1948
BseLI	CCNNNNNNNGG	4 cut(s)	83, 106, 1052, 1100
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	3 cut(s)	233, 398, 1093
BseNI	ACTGG	2 cut(s)	364, 653
BseRI	GAGGAG	6 cut(s)	258, 294, 303, 718, 761, 1086
BseSI	GKGCMC	1 cut(s)	970
BseXI	GCAGC	6 cut(s)	139, 418, 565, 772, 775, 1483
BseYI	CCCAGC	1 cut(s)	1615
BsgI	GTGCAG	2 cut(s)	1629, 1869
Bsh1236I	CGCG	2 cut(s)	1402, 1719
BshFI	GGCC	6 cut(s)	16, 538, 673, 866, 1391, 1844
BshNI	GGYRCC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	833
BsiHKAI	GWGCWC	4 cut(s)	220, 970, 1513, 1969
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	9 cut(s)	13, 32, 120, 149, 275, 318, 677, 943, 1101
BslFI	GGGAC	3 cut(s)	760, 837, 1634
BslI	CCNNNNNNNGG	4 cut(s)	83, 106, 1052, 1100
BsmAI	GTCTC	3 cut(s)	441, 683, 1281
BsmBI	CGTCTC	1 cut(s)	683
BsmFI	GGGAC	3 cut(s)	760, 837, 1634
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	6 cut(s)	16, 538, 673, 866, 1391, 1844
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	2 cut(s)	602, 1979
Bsp1286I	GDGCHC	4 cut(s)	220, 970, 1513, 1969
Bsp13I	TCCGGA	1 cut(s)	942
Bsp1407I	TGTACA	1 cut(s)	1086
Bsp143I	GATC	8 cut(s)	830, 958, 1048, 1546, 1555, 1675, 1756, 1856
Bsp1720I	GCTNAGC	1 cut(s)	219
Bsp68I	TCGCGA	1 cut(s)	1719
BspANI	GGCC	6 cut(s)	16, 538, 673, 866, 1391, 1844
BspCNI	CTCAG	3 cut(s)	232, 397, 1092
BspDI	ATCGAT	1 cut(s)	833
BspEI	TCCGGA	1 cut(s)	942
BspFNI	CGCG	2 cut(s)	1402, 1719
BspHI	TCATGA	1 cut(s)	1558
BspLI	GGNNCC	4 cut(s)	537, 651, 1650, 1677
BspMI	ACCTGC	1 cut(s)	1077
BspPI	GGATC	6 cut(s)	838, 953, 1554, 1670, 1683, 1851
BspT104I	TTCGAA	2 cut(s)	602, 1979
BspT107I	GGYRCC	1 cut(s)	649
BsrBI	CCGCTC	1 cut(s)	1471
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	4 cut(s)	12, 31, 119, 148
BsrGI	TGTACA	1 cut(s)	1086
BsrI	ACTGG	2 cut(s)	364, 653
BssAI	RCCGGY	4 cut(s)	12, 31, 119, 148
BssECI	CCNNGG	3 cut(s)	317, 558, 677
BssMI	GATC	8 cut(s)	830, 958, 1048, 1546, 1555, 1675, 1756, 1856
BssT1I	CCWWGG	1 cut(s)	558
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	3 cut(s)	1275, 1903, 1921
Bst6I	CTCTTC	6 cut(s)	286, 693, 713, 1815, 1981, 2021
BstAPI	GCANNNNNTGC	1 cut(s)	1802
BstAUI	TGTACA	1 cut(s)	1086
BstBAI	YACGTR	1 cut(s)	83
BstBI	TTCGAA	2 cut(s)	602, 1979
BstC8I	GCNNGC	2 cut(s)	150, 1393
BstDEI	CTNAG	3 cut(s)	219, 384, 1079
BstF5I	GGATG	4 cut(s)	223, 568, 1379, 1948
BstFNI	CGCG	2 cut(s)	1402, 1719
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	3 cut(s)	73, 1404, 1807
BstKTI	GATC	8 cut(s)	833, 961, 1051, 1549, 1558, 1678, 1759, 1859
BstMAI	GTCTC	3 cut(s)	441, 683, 1281
BstMBI	GATC	8 cut(s)	830, 958, 1048, 1546, 1555, 1675, 1756, 1856
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	5 cut(s)	316, 317, 396, 676, 1099
BstSFI	CTRYAG	2 cut(s)	335, 1534
BstSLI	GKGCMC	1 cut(s)	970
BstUI	CGCG	2 cut(s)	1402, 1719
BstV1I	GCAGC	6 cut(s)	139, 418, 565, 772, 775, 1483
BstV2I	GAAGAC	2 cut(s)	803, 1134
BstX2I	RGATCY	4 cut(s)	958, 1048, 1675, 1856
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstYI	RGATCY	4 cut(s)	958, 1048, 1675, 1856
Bsu15I	ATCGAT	1 cut(s)	833
BsuI	GTATCC	1 cut(s)	1050
BsuRI	GGCC	6 cut(s)	16, 538, 673, 866, 1391, 1844
BsuTUI	ATCGAT	1 cut(s)	833
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	4 cut(s)	223, 568, 1379, 1948
BtsI	GCAGTG	2 cut(s)	1164, 1515
BtsIMutI	CAGTG	5 cut(s)	660, 1087, 1164, 1515, 1860
BtuMI	TCGCGA	1 cut(s)	1719
BveI	ACCTGC	1 cut(s)	1077
Cac8I	GCNNGC	2 cut(s)	150, 1393
CaiI	CAGNNNCTG	1 cut(s)	766
CciI	TCATGA	1 cut(s)	1558
CfoI	GCGC	3 cut(s)	73, 1404, 1807
Cfr10I	RCCGGY	4 cut(s)	12, 31, 119, 148
Cfr13I	GGNCC	7 cut(s)	206, 536, 671, 864, 1103, 1648, 1842
Cfr9I	CCCGGG	1 cut(s)	317
ClaI	ATCGAT	1 cut(s)	833
Csp6I	GTAC	4 cut(s)	250, 358, 1087, 1642
CspCI	CAANNNNNGTGG	2 cut(s)	1753, 1788
CviAII	CATG	8 cut(s)	593, 611, 827, 1221, 1258, 1412, 1559, 1645
CviQI	GTAC	4 cut(s)	250, 358, 1087, 1642
DdeI	CTNAG	3 cut(s)	219, 384, 1079
DpnI	GATC	8 cut(s)	832, 960, 1050, 1548, 1557, 1677, 1758, 1858
DpnII	GATC	8 cut(s)	830, 958, 1048, 1546, 1555, 1675, 1756, 1856
DrdI	GACNNNNNNGTC	1 cut(s)	1487
DseDI	GACNNNNNNGTC	1 cut(s)	1487
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	6 cut(s)	286, 693, 713, 1815, 1981, 2021
EarI	CTCTTC	6 cut(s)	286, 693, 713, 1815, 1981, 2021
EciI	GGCGGA	3 cut(s)	30, 261, 1924
Ecl136II	GAGCTC	2 cut(s)	218, 1967
Eco130I	CCWWGG	1 cut(s)	558
Eco147I	AGGCCT	1 cut(s)	1391
Eco24I	GRGCYC	2 cut(s)	220, 1969
Eco47I	GGWCC	3 cut(s)	206, 1103, 1648
Eco53kI	GAGCTC	2 cut(s)	218, 1967
Eco57I	CTGAAG	2 cut(s)	788, 1713
Eco72I	CACGTG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	2 cut(s)	218, 1967
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	558
EcoT38I	GRGCYC	2 cut(s)	220, 1969
ErhI	CCWWGG	1 cut(s)	558
Esp3I	CGTCTC	1 cut(s)	683
FaeI	CATG	8 cut(s)	596, 614, 830, 1224, 1261, 1415, 1562, 1648
FalI	AAGNNNNNCTT	2 cut(s)	1995, 2027
FaqI	GGGAC	3 cut(s)	760, 837, 1634
FatI	CATG	8 cut(s)	592, 610, 826, 1220, 1257, 1411, 1558, 1644
FauI	CCCGC	6 cut(s)	30, 261, 474, 501, 579, 1299
FauNDI	CATATG	2 cut(s)	804, 1681
FbaI	TGATCA	1 cut(s)	1555
FokI	GGATG	4 cut(s)	210, 575, 1366, 1955
FriOI	GRGCYC	2 cut(s)	220, 1969
FspBI	CTAG	3 cut(s)	213, 441, 1107
GlaI	GCGC	3 cut(s)	72, 1403, 1806
GsaI	CCCAGC	1 cut(s)	1619
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	6 cut(s)	16, 538, 673, 866, 1391, 1844
HapII	CCGG	9 cut(s)	13, 32, 120, 149, 275, 318, 677, 943, 1101
HhaI	GCGC	3 cut(s)	73, 1404, 1807
Hin1II	CATG	8 cut(s)	596, 614, 830, 1224, 1261, 1415, 1562, 1648
Hin6I	GCGC	3 cut(s)	71, 1402, 1805
HinP1I	GCGC	3 cut(s)	71, 1402, 1805
HincII	GTYRAC	1 cut(s)	1917
HindII	GTYRAC	1 cut(s)	1917
HindIII	AAGCTT	2 cut(s)	1031, 1820
HinfI	GANTC	9 cut(s)	55, 278, 616, 773, 1262, 1444, 1523, 1571, 1688
HpaII	CCGG	9 cut(s)	13, 32, 120, 149, 275, 318, 677, 943, 1101
HphI	GGTGA	7 cut(s)	176, 221, 386, 896, 1753, 1754, 2078
Hpy166II	GTNNAC	3 cut(s)	968, 1087, 1917
Hpy188I	TCNGA	5 cut(s)	1187, 1528, 1555, 1693, 2083
Hpy188III	TCNNGA	9 cut(s)	846, 877, 943, 956, 1064, 1559, 1625, 1718, 1893
Hpy8I	GTNNAC	3 cut(s)	968, 1087, 1917
HpyAV	CCTTC	6 cut(s)	168, 763, 814, 1309, 1662, 1899
HpyCH4III	ACNGT	3 cut(s)	1275, 1903, 1921
HpyCH4IV	ACGT	3 cut(s)	82, 1324, 1798
HpyF3I	CTNAG	3 cut(s)	219, 384, 1079
HpySE526I	ACGT	3 cut(s)	82, 1324, 1798
Hsp92II	CATG	8 cut(s)	596, 614, 830, 1224, 1261, 1415, 1562, 1648
HspAI	GCGC	3 cut(s)	71, 1402, 1805
Kpn2I	TCCGGA	1 cut(s)	942
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Ksp22I	TGATCA	1 cut(s)	1555
Kzo9I	GATC	8 cut(s)	830, 958, 1048, 1546, 1555, 1675, 1756, 1856
LmnI	GCTCC	5 cut(s)	160, 316, 569, 1516, 1964
Lsp1109I	GCAGC	6 cut(s)	139, 418, 565, 772, 775, 1483
LweI	GCATC	5 cut(s)	232, 1191, 1388, 1933, 1996
MaeI	CTAG	3 cut(s)	213, 441, 1107
MaeII	ACGT	3 cut(s)	82, 1324, 1798
MaeIII	GTNAC	7 cut(s)	392, 843, 1159, 1600, 1742, 1897, 2066
MalI	GATC	8 cut(s)	832, 960, 1050, 1548, 1557, 1677, 1758, 1858
MbiI	CCGCTC	1 cut(s)	1471
MboI	GATC	8 cut(s)	830, 958, 1048, 1546, 1555, 1675, 1756, 1856
MfeI	CAATTG	1 cut(s)	1929
MflI	RGATCY	4 cut(s)	958, 1048, 1675, 1856
MhlI	GDGCHC	4 cut(s)	220, 970, 1513, 1969
MlyI	GAGTC	2 cut(s)	272, 782
MmeI	TCCRAC	1 cut(s)	1524
MroI	TCCGGA	1 cut(s)	942
MroNI	GCCGGC	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	1878
MseI	TTAA	3 cut(s)	1170, 1230, 1344
MslI	CAYNNNNRTG	2 cut(s)	925, 2043
MspA1I	CMGCKG	1 cut(s)	766
MspI	CCGG	9 cut(s)	13, 32, 120, 149, 275, 318, 677, 943, 1101
MspR9I	CCNGG	5 cut(s)	318, 319, 398, 678, 1101
MunI	CAATTG	1 cut(s)	1929
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	2 cut(s)	1402, 1719
NaeI	GCCGGC	1 cut(s)	150
NciI	CCSGG	4 cut(s)	318, 319, 678, 1101
NdeI	CATATG	2 cut(s)	804, 1681
NdeII	GATC	8 cut(s)	830, 958, 1048, 1546, 1555, 1675, 1756, 1856
NgoMIV	GCCGGC	1 cut(s)	148
NlaIII	CATG	8 cut(s)	596, 614, 830, 1224, 1261, 1415, 1562, 1648
NlaIV	GGNNCC	4 cut(s)	537, 651, 1650, 1677
NmuCI	GTSAC	6 cut(s)	392, 843, 1159, 1742, 1897, 2066
NruI	TCGCGA	1 cut(s)	1719
NspV	TTCGAA	2 cut(s)	602, 1979
PagI	TCATGA	1 cut(s)	1558
PceI	AGGCCT	1 cut(s)	1391
PcsI	WCGNNNNNNNCGW	1 cut(s)	1004
PctI	GAATGC	1 cut(s)	598
PdiI	GCCGGC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	1878
PfeI	GAWTC	7 cut(s)	55, 616, 1262, 1444, 1523, 1571, 1688
PflMI	CCANNNNNTGG	1 cut(s)	1052
PleI	GAGTC	2 cut(s)	272, 781
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	2 cut(s)	272, 781
Ppu21I	YACGTR	1 cut(s)	83
PsiI	TTATAA	2 cut(s)	114, 1596
Psp124BI	GAGCTC	2 cut(s)	220, 1969
Psp6I	CCWGG	1 cut(s)	396
PspCI	CACGTG	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	1615
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	4 cut(s)	537, 651, 1650, 1677
PspPI	GGNCC	7 cut(s)	206, 536, 671, 864, 1103, 1648, 1842
PstNI	CAGNNNCTG	1 cut(s)	766
PsuI	RGATCY	4 cut(s)	958, 1048, 1675, 1856
PvuII	CAGCTG	1 cut(s)	766
RruI	TCGCGA	1 cut(s)	1719
RsaI	GTAC	4 cut(s)	251, 359, 1088, 1643
RsaNI	GTAC	4 cut(s)	250, 358, 1087, 1642
RseI	CAYNNNNRTG	2 cut(s)	925, 2043
SacI	GAGCTC	2 cut(s)	220, 1969
SaqAI	TTAA	3 cut(s)	1170, 1230, 1344
Sau3AI	GATC	8 cut(s)	830, 958, 1048, 1546, 1555, 1675, 1756, 1856
Sau96I	GGNCC	7 cut(s)	206, 536, 671, 864, 1103, 1648, 1842
SchI	GAGTC	2 cut(s)	272, 782
ScrFI	CCNGG	5 cut(s)	318, 319, 398, 678, 1101
SduI	GDGCHC	4 cut(s)	220, 970, 1513, 1969
SfaNI	GCATC	5 cut(s)	232, 1191, 1388, 1933, 1996
SfcI	CTRYAG	2 cut(s)	335, 1534
SfuI	TTCGAA	2 cut(s)	602, 1979
SinI	GGWCC	3 cut(s)	206, 1103, 1648
SmaI	CCCGGG	1 cut(s)	319
SmiMI	CAYNNNNRTG	2 cut(s)	925, 2043
SmlI	CTYRAG	2 cut(s)	306, 877
SmoI	CTYRAG	2 cut(s)	306, 877
SseBI	AGGCCT	1 cut(s)	1391
SspMI	CTAG	3 cut(s)	213, 441, 1107
SstI	GAGCTC	2 cut(s)	220, 1969
StuI	AGGCCT	1 cut(s)	1391
StyD4I	CCNGG	5 cut(s)	316, 317, 396, 676, 1099
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	3 cut(s)	1275, 1903, 1921
TaiI	ACGT	3 cut(s)	85, 1327, 1801
TaqI	TCGA	5 cut(s)	528, 602, 833, 1872, 1979
TatI	WGTACW	2 cut(s)	357, 1086
TfiI	GAWTC	7 cut(s)	55, 616, 1262, 1444, 1523, 1571, 1688
Tru1I	TTAA	3 cut(s)	1170, 1230, 1344
Tru9I	TTAA	3 cut(s)	1170, 1230, 1344
TscAI	CASTG	5 cut(s)	660, 1087, 1164, 1522, 1867
TseFI	GTSAC	6 cut(s)	392, 843, 1159, 1742, 1897, 2066
TseI	GCWGC	6 cut(s)	152, 406, 578, 760, 763, 1496
Tsp45I	GTSAC	6 cut(s)	392, 843, 1159, 1742, 1897, 2066
TspGWI	ACGGA	3 cut(s)	633, 707, 1220
TspMI	CCCGGG	1 cut(s)	317
TspRI	CASTG	5 cut(s)	660, 1087, 1164, 1522, 1867
Van91I	CCANNNNNTGG	1 cut(s)	1052
VneI	GTGCAC	1 cut(s)	966
VpaK11BI	GGWCC	3 cut(s)	206, 1103, 1648
XapI	RAATTY	5 cut(s)	475, 781, 938, 1631, 1975
XmaI	CCCGGG	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	1878
XspI	CTAG	3 cut(s)	213, 441, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.