Rmu_sc0002511.1_g000001

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002511.1
OG0017560
Physical Location & Seq
Reverse (-)
673 .. 1428
756 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
atggcagaagagcaaaaccaccaccttcttccagagtcaccacaagagcaaaaccaccactctcttccagagtcaccaccaccaccacaacaaaaaccacaaaacaaccactttccaccacccgaaatgattccggaccgaaatataaaagaatgtaatatgcatcaccaaaccagtgaaccctacagagctctctgcacctgcctcaccatcctcatcctcatcctcggcgccaccgccctcgcgctctggctcatttaccgcccccacaagccgcagttcaccgtcgccgcggtcgccatctactccctcaacgccacctcccctccctcccaaatctccaccaccatgcagttcaccatcgtcacgcgcaaccccaaccggagggtctccatccgctacgaccgtctccaggcctttgtggcctatcgcaaccaagccattacccagcaggtgatgctccccccgctggcgcacgggcgccatagtagcgtggctgtgtcgcccgtgcttgggggagtgccggtgccggtgtcggcggaggtgttgaatgggctagcgattgacgaggcgtacggggtggtgaagctgagggtggtggtggtggggaggctgaggtggaaggtgacggggttggggataaggaccgggcattatgggatctatgtcaagtgtgatgtgctggttgggttgaagaaagggttcgtgggtcaagttccattgctgggttctccttattgtaaagttgatatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

251

Amino Acids

27.79

Weight (kDa)

9.38

Isoelectric Point (pI)

59.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 124 - 225 1e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01410
fragaria_vesca FvH4_7g17770
malus_domestica MD07G1160200.v1.1
prunus_persica Prupe.2G198600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0361161
rosa_laevigata RLG00000027744
rosa_multiflora Rmu_co8099248.1_g000001 Rmu_sc0002511.1_g000001
rosa_roxburghii Rroxscaffold_4G00295350
rosa_rugosa Rorug01G0286600
rosa_samantha Rh6CG298900
rosa_wichuraiana Rw1G026330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 209, 442
Acc36I ACCTGC 2 cut(s) 209, 442
AccB1I GGYRCC 3 cut(s) 230, 480, 526
AccII CGCG 3 cut(s) 245, 293, 370
AccIII TCCGGA 1 cut(s) 133
AciI CCGC 8 cut(s) 237, 262, 275, 291, 293, 397, 467, 539
AclWI GGATC 1 cut(s) 668
AcyI GRCGYC 2 cut(s) 231, 481
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 6 cut(s) 384, 412, 469, 512, 513, 725
AgsI TTSAA 2 cut(s) 550, 694
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 2 cut(s) 191, 589
AluI AGCT 2 cut(s) 191, 589
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 394, 413
AlwI GGATC 1 cut(s) 668
Aor13HI TCCGGA 1 cut(s) 133
AoxI GGCC 2 cut(s) 414, 423
Asp700I GAANNNNTTC 2 cut(s) 129, 701
AspLEI GCGC 5 cut(s) 233, 247, 372, 475, 483
AspS9I GGNCC 2 cut(s) 136, 645
AsuC2I CCSGG 1 cut(s) 649
AsuHPI GGTGA 9 cut(s) 30, 66, 158, 199, 274, 349, 466, 595, 637
AsuNHI GCTAGC 1 cut(s) 556
AvaII GGWCC 2 cut(s) 136, 645
BanI GGYRCC 3 cut(s) 230, 480, 526
BanII GRGCYC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 193
BbvCI CCTCAGC 2 cut(s) 590, 614
BccI CCATC 4 cut(s) 218, 308, 368, 401
BciT130I CCWGG 1 cut(s) 413
BcnI CCSGG 1 cut(s) 649
BcoDI GTCTC 2 cut(s) 394, 413
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 1 cut(s) 184
BfoI RGCGCY 2 cut(s) 234, 484
BfuAI ACCTGC 2 cut(s) 209, 442
BglI GCCNNNNNGGC 1 cut(s) 422
BisI GCNGC 2 cut(s) 275, 291
BlsI GCNGC 2 cut(s) 276, 292
Bme1390I CCNGG 2 cut(s) 413, 649
Bme18I GGWCC 2 cut(s) 136, 645
BmgT120I GGNCC 2 cut(s) 136, 645
BmiI GGNNCC 3 cut(s) 232, 482, 528
BmrFI CCNGG 2 cut(s) 413, 649
BmsI GCATC 2 cut(s) 172, 447
BmtI GCTAGC 1 cut(s) 560
BpmI CTGGAG 1 cut(s) 395
Bpu10I CCTNAGC 2 cut(s) 590, 614
BpuMI CCSGG 1 cut(s) 649
BsaHI GRCGYC 2 cut(s) 231, 481
BsaI GGTCTC 1 cut(s) 394
BsaJI CCNNGG 2 cut(s) 226, 291
BsaWI WCCGGW 2 cut(s) 133, 381
BsaXI ACNNNNNCTCC 6 cut(s) 305, 310, 335, 340, 510, 540
Bsc4I CCNNNNNNNGG 6 cut(s) 384, 412, 469, 512, 513, 725
Bse118I RCCGGY 2 cut(s) 523, 529
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 719
BseAI TCCGGA 1 cut(s) 133
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 226, 291
BseGI GGATG 4 cut(s) 210, 216, 222, 393
BseLI CCNNNNNNNGG 6 cut(s) 384, 412, 469, 512, 513, 725
BseMI GCAATG 1 cut(s) 719
BseMII CTCAG 2 cut(s) 581, 605
BseNI ACTGG 1 cut(s) 174
BseYI CCCAGC 2 cut(s) 447, 724
BsgI GTGCAG 1 cut(s) 181
Bsh1236I CGCG 3 cut(s) 245, 293, 370
Bsh1285I CGRYCG 2 cut(s) 297, 406
BshFI GGCC 2 cut(s) 416, 425
BshNI GGYRCC 3 cut(s) 230, 480, 526
BsiEI CGRYCG 2 cut(s) 297, 406
BsiHKAI GWGCWC 1 cut(s) 193
BsiSI CCGG 5 cut(s) 134, 382, 524, 530, 648
BsiWI CGTACG 1 cut(s) 573
BslI CCNNNNNNNGG 6 cut(s) 384, 412, 469, 512, 513, 725
BsmAI GTCTC 2 cut(s) 394, 413
BsmBI CGTCTC 1 cut(s) 413
BsnI GGCC 2 cut(s) 416, 425
Bso31I GGTCTC 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 193
Bsp13I TCCGGA 1 cut(s) 133
Bsp143I GATC 1 cut(s) 660
BspACI CCGC 8 cut(s) 237, 262, 275, 291, 293, 397, 467, 539
BspANI GGCC 2 cut(s) 416, 425
BspCNI CTCAG 2 cut(s) 582, 606
BspEI TCCGGA 1 cut(s) 133
BspFNI CGCG 3 cut(s) 245, 293, 370
BspLI GGNNCC 3 cut(s) 232, 482, 528
BspMI ACCTGC 2 cut(s) 209, 442
BspOI GCTAGC 1 cut(s) 560
BspPI GGATC 1 cut(s) 668
BspQI GCTCTTC 1 cut(s) 3
BspT107I GGYRCC 3 cut(s) 230, 480, 526
BspTNI GGTCTC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 719
BsrFI RCCGGY 2 cut(s) 523, 529
BsrI ACTGG 1 cut(s) 174
BssAI RCCGGY 2 cut(s) 523, 529
BssECI CCNNGG 2 cut(s) 226, 291
BssMI GATC 1 cut(s) 660
BssNI GRCGYC 2 cut(s) 231, 481
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 2 cut(s) 286, 407
Bst6I CTCTTC 2 cut(s) 3, 69
BstACI GRCGYC 2 cut(s) 231, 481
BstAPI GCANNNNNTGC 1 cut(s) 457
BstC8I GCNNGC 2 cut(s) 471, 558
BstDEI CTNAG 2 cut(s) 590, 614
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 4 cut(s) 210, 216, 222, 393
BstFNI CGCG 3 cut(s) 245, 293, 370
BstH2I RGCGCY 2 cut(s) 234, 484
BstHHI GCGC 5 cut(s) 233, 247, 372, 475, 483
BstKTI GATC 1 cut(s) 663
BstMAI GTCTC 2 cut(s) 394, 413
BstMBI GATC 1 cut(s) 660
BstMCI CGRYCG 2 cut(s) 297, 406
BstMWI GCNNNNNNNGC 5 cut(s) 296, 422, 457, 466, 489
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 411, 647
BstSFI CTRYAG 1 cut(s) 184
BstUI CGCG 3 cut(s) 245, 293, 370
BstX2I RGATCY 1 cut(s) 660
BstYI RGATCY 1 cut(s) 660
BsuRI GGCC 2 cut(s) 416, 425
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 4 cut(s) 210, 216, 222, 393
BtsIMutI CAGTG 1 cut(s) 181
BveI ACCTGC 2 cut(s) 209, 442
Cac8I GCNNGC 2 cut(s) 471, 558
CfoI GCGC 5 cut(s) 233, 247, 372, 475, 483
Cfr10I RCCGGY 2 cut(s) 523, 529
Cfr13I GGNCC 2 cut(s) 136, 645
Cfr42I CCGCGG 1 cut(s) 294
CpoI CGGWCCG 1 cut(s) 136
Csp6I GTAC 1 cut(s) 574
CspI CGGWCCG 1 cut(s) 136
CviAII CATG 1 cut(s) 349
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 2 cut(s) 590, 614
DinI GGCGCC 2 cut(s) 232, 482
DpnI GATC 1 cut(s) 662
DpnII GATC 1 cut(s) 660
Eam1104I CTCTTC 2 cut(s) 3, 69
EarI CTCTTC 2 cut(s) 3, 69
EciI GGCGGA 1 cut(s) 554
Ecl136II GAGCTC 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 416
Eco24I GRGCYC 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 394
Eco47I GGWCC 2 cut(s) 136, 645
Eco53kI GAGCTC 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 193
EgeI GGCGCC 2 cut(s) 232, 482
EheI GGCGCC 2 cut(s) 232, 482
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 1 cut(s) 352
FaiI YATR 8 cut(s) 146, 161, 350, 486, 657, 666, 752, 754
FatI CATG 1 cut(s) 348
FauI CCCGC 1 cut(s) 474
Fnu4HI GCNGC 2 cut(s) 275, 291
FokI GGATG 4 cut(s) 197, 203, 209, 380
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 2 cut(s) 275, 291
FspBI CTAG 1 cut(s) 557
GlaI GCGC 5 cut(s) 232, 246, 371, 474, 482
GluI GCNGC 2 cut(s) 275, 291
GsaI CCCAGC 2 cut(s) 451, 728
GsuI CTGGAG 1 cut(s) 395
HaeII RGCGCY 2 cut(s) 234, 484
HaeIII GGCC 2 cut(s) 416, 425
HapII CCGG 5 cut(s) 134, 382, 524, 530, 648
HhaI GCGC 5 cut(s) 233, 247, 372, 475, 483
Hin1I GRCGYC 2 cut(s) 231, 481
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 5 cut(s) 231, 245, 370, 473, 481
HinP1I GCGC 5 cut(s) 231, 245, 370, 473, 481
HinfI GANTC 3 cut(s) 35, 71, 130
HpaII CCGG 5 cut(s) 134, 382, 524, 530, 648
HphI GGTGA 9 cut(s) 30, 66, 158, 199, 274, 349, 466, 595, 637
Hpy166II GTNNAC 3 cut(s) 179, 282, 357
Hpy188III TCNNGA 3 cut(s) 32, 68, 134
Hpy8I GTNNAC 3 cut(s) 179, 282, 357
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 35, 616
HpyCH4III ACNGT 2 cut(s) 286, 407
HpyCH4V TGCA 3 cut(s) 163, 198, 352
HpyF10VI GCNNNNNNNGC 5 cut(s) 296, 422, 457, 466, 489
HpyF3I CTNAG 2 cut(s) 590, 614
Hsp92I GRCGYC 2 cut(s) 231, 481
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 5 cut(s) 231, 245, 370, 473, 481
KasI GGCGCC 2 cut(s) 230, 480
Kpn2I TCCGGA 1 cut(s) 133
KspI CCGCGG 1 cut(s) 294
Kzo9I GATC 1 cut(s) 660
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 465
LweI GCATC 2 cut(s) 172, 447
MaeI CTAG 1 cut(s) 557
MaeIII GTNAC 4 cut(s) 36, 72, 364, 625
MalI GATC 1 cut(s) 662
MboI GATC 1 cut(s) 660
MboII GAAGA 4 cut(s) 20, 20, 56, 706
MflI RGATCY 1 cut(s) 660
MhlI GDGCHC 1 cut(s) 193
Mly113I GGCGCC 2 cut(s) 231, 481
MlyI GAGTC 2 cut(s) 44, 80
Mph1103I ATGCAT 1 cut(s) 165
MroI TCCGGA 1 cut(s) 133
MroXI GAANNNNTTC 2 cut(s) 129, 701
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 2 cut(s) 293, 469
MspI CCGG 5 cut(s) 134, 382, 524, 530, 648
MspR9I CCNGG 2 cut(s) 413, 649
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 3 cut(s) 245, 293, 370
MwoI GCNNNNNNNGC 5 cut(s) 296, 422, 457, 466, 489
NarI GGCGCC 2 cut(s) 231, 481
NciI CCSGG 1 cut(s) 649
NdeII GATC 1 cut(s) 660
NheI GCTAGC 1 cut(s) 556
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 3 cut(s) 232, 482, 528
NmeAIII GCCGAG 1 cut(s) 207
NmuCI GTSAC 4 cut(s) 36, 72, 364, 625
NsiI ATGCAT 1 cut(s) 165
PaqCI CACCTGC 2 cut(s) 209, 442
PceI AGGCCT 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 3
PdmI GAANNNNTTC 2 cut(s) 129, 701
PfeI GAWTC 1 cut(s) 130
Pfl23II CGTACG 1 cut(s) 573
PkrI GCNGC 2 cut(s) 276, 292
PleI GAGTC 2 cut(s) 43, 79
PluTI GGCGCC 2 cut(s) 234, 484
PpsI GAGTC 2 cut(s) 43, 79
Psp124BI GAGCTC 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 411
PspFI CCCAGC 2 cut(s) 447, 724
PspGI CCWGG 1 cut(s) 411
PspLI CGTACG 1 cut(s) 573
PspN4I GGNNCC 3 cut(s) 232, 482, 528
PspPI GGNCC 2 cut(s) 136, 645
PsuI RGATCY 1 cut(s) 660
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 1 cut(s) 347
Rsr2I CGGWCCG 1 cut(s) 136
RsrII CGGWCCG 1 cut(s) 136
SacI GAGCTC 1 cut(s) 193
SacII CCGCGG 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 3
SatI GCNGC 2 cut(s) 275, 291
Sau3AI GATC 1 cut(s) 660
Sau96I GGNCC 2 cut(s) 136, 645
SchI GAGTC 2 cut(s) 44, 80
ScrFI CCNGG 2 cut(s) 413, 649
SduI GDGCHC 1 cut(s) 193
SetI ASST 9 cut(s) 27, 193, 203, 323, 456, 546, 591, 620, 627
SfaNI GCATC 2 cut(s) 172, 447
SfcI CTRYAG 1 cut(s) 184
SfiI GGCCNNNNNGGCC 1 cut(s) 422
SfoI GGCGCC 2 cut(s) 232, 482
Sfr303I CCGCGG 1 cut(s) 294
SgrBI CCGCGG 1 cut(s) 294
SinI GGWCC 2 cut(s) 136, 645
SmiMI CAYNNNNRTG 1 cut(s) 347
SseBI AGGCCT 1 cut(s) 416
SsiI CCGC 8 cut(s) 237, 262, 275, 291, 293, 397, 467, 539
SspDI GGCGCC 2 cut(s) 230, 480
SspMI CTAG 1 cut(s) 557
SstI GAGCTC 1 cut(s) 193
StuI AGGCCT 1 cut(s) 416
StyD4I CCNGG 2 cut(s) 411, 647
TaaI ACNGT 2 cut(s) 286, 407
TaqII GACCGA 1 cut(s) 153
TauI GCSGC 2 cut(s) 277, 293
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 4 cut(s) 36, 72, 364, 625
Tsp45I GTSAC 4 cut(s) 36, 72, 364, 625
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 136, 645
XmnI GAANNNNTTC 2 cut(s) 129, 701
XspI CTAG 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.