Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002613.1

Orthogroup ID

OG0008707

Physical Location & Seq

Genomic Coordinates Reverse (-)

11497 .. 12821

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002613.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atggcaatgaactccttactgcacctccctaaaccccatttccctccaaccttccctacacacccaaaggcccaaacccaactctcaaagtccaccagtcaatatggtaacccgaaaaccatggtgggtggtctactcggggcgggtctgaccatgaccctgaccgttatggcacccgcctcggccgctgagctaccgttactggattctctgcagctcagtgaacctgccaatgccctctccctgcccacatgggccatacacgtgtccagcgtcgttgaatggattacagcaatggtgttggtgtggcagtatggtgagaagtccgggttcgaatcgtggaaagggctggcttggggtatggttccccttcttggtggagcattctgtgcatgcacttggcatttcttttataactcagagtctcttgaggtattggtggctcttcaagcagccctgacagttataggcaatgccacaatgtgttttgcggcatatcgtatttacagatcaactgaagaacgctccaagaagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2499

Protein Analysis

179

Amino Acids

19.48

Weight (kDa)

7.76

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22830 AT4G22830
fragaria_vesca	FvH4_5g00940 FvH4_5g00940 FvH4_5g00940 FvH4_5g00940 FvH4_5g00940
malus_domestica	MD06G1068000.v1.1
prunus_persica	Prupe.5G082400_v2.0.a1 Prupe.5G082400_v2.0.a1 Prupe.5G082400_v2.0.a1
pyrus_communis	pycom06g06530
rosa_chinensis	RchiOBHm_Chr7g0200451
rosa_laevigata	RLG00000003724
rosa_multiflora	Rmu_co8238855.1_g000001 Rmu_sc0000617.1_g000028 Rmu_sc0002613.1_g000002
rosa_roxburghii	Rroxscaffold_3G00255960
rosa_rugosa	Rorug07G0060300
rosa_samantha	Rh7AG185800 Rh7CG196100 Rh7DG189900
rosa_wichuraiana	Rw7G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	4 cut(s)	143, 177, 186, 491
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	537
AcvI	CACGTG	1 cut(s)	265
AdeI	CACNNNGTG	1 cut(s)	483
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflIII	ACRYGT	2 cut(s)	262, 264
AgsI	TTSAA	2 cut(s)	281, 449
AluBI	AGCT	3 cut(s)	193, 217, 535
AluI	AGCT	3 cut(s)	193, 217, 535
Alw26I	GTCTC	1 cut(s)	429
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	3 cut(s)	69, 183, 255
ApeKI	GCWGC	2 cut(s)	214, 452
AspS9I	GGNCC	2 cut(s)	70, 255
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	333
AvaI	CYCGRG	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	172
BbrPI	CACGTG	1 cut(s)	265
BbvI	GCAGC	2 cut(s)	226, 464
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BcnI	CCSGG	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	4 cut(s)	186, 215, 453, 492
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	4 cut(s)	187, 216, 454, 493
Bme1390I	CCNGG	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	70, 255
BmiI	GGNNCC	2 cut(s)	174, 366
BmrFI	CCNGG	1 cut(s)	328
Bpu1102I	GCTNAGC	1 cut(s)	189
Bpu14I	TTCGAA	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	120, 180
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	96, 207
Bse3DI	GCAATG	3 cut(s)	12, 300, 478
BseDI	CCNNGG	2 cut(s)	120, 180
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	3 cut(s)	12, 300, 478
BseMII	CTCAG	3 cut(s)	180, 232, 432
BseNI	ACTGG	2 cut(s)	96, 207
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	226, 464
BsgI	GTGCAG	1 cut(s)	5
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	71, 185, 257
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	3 cut(s)	71, 185, 257
BsoBI	CYCGRG	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	509
Bsp1720I	GCTNAGC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	4 cut(s)	143, 177, 186, 491
BspANI	GGCC	3 cut(s)	71, 185, 257
BspCNI	CTCAG	3 cut(s)	181, 231, 431
BspLI	GGNNCC	2 cut(s)	174, 366
BspMAI	CTGCAG	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	450
BspT104I	TTCGAA	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	3 cut(s)	12, 300, 478
BsrI	ACTGG	2 cut(s)	96, 207
BssECI	CCNNGG	2 cut(s)	120, 180
BssMI	GATC	1 cut(s)	509
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	3 cut(s)	166, 198, 463
Bst6I	CTCTTC	1 cut(s)	450
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstBAI	YACGTR	1 cut(s)	265
BstBI	TTCGAA	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	351, 394
BstDEI	CTNAG	3 cut(s)	189, 218, 418
BstDSI	CCRYGG	1 cut(s)	120
BstEII	GGTNACC	1 cut(s)	107
BstKTI	GATC	1 cut(s)	512
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	1 cut(s)	509
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 389, 449
BstNSI	RCATGY	1 cut(s)	396
BstPI	GGTNACC	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	226, 464
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	71, 185, 257
BtgI	CCRYGG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	351, 394
Cfr13I	GGNCC	2 cut(s)	70, 255
CseI	GACGC	1 cut(s)	262
CviAII	CATG	4 cut(s)	121, 154, 252, 393
DdeI	CTNAG	3 cut(s)	189, 218, 418
DpnI	GATC	1 cut(s)	511
DpnII	GATC	1 cut(s)	509
DraIII	CACNNNGTG	1 cut(s)	483
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	120
Eco52I	CGGCCG	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	537
Eco72I	CACGTG	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	107
EcoO65I	GGTNACC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	4 cut(s)	124, 157, 255, 396
FatI	CATG	4 cut(s)	120, 153, 251, 392
FauI	CCCGC	2 cut(s)	136, 184
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	4 cut(s)	186, 215, 453, 492
Fsp4HI	GCNGC	4 cut(s)	186, 215, 453, 492
GluI	GCNGC	4 cut(s)	186, 215, 453, 492
HaeIII	GGCC	3 cut(s)	71, 185, 257
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	262
Hin1II	CATG	4 cut(s)	124, 157, 255, 396
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	3 cut(s)	206, 335, 422
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	3 cut(s)	93, 134, 224
Hpy188I	TCNGA	2 cut(s)	150, 421
Hpy188III	TCNNGA	1 cut(s)	428
Hpy8I	GTNNAC	3 cut(s)	93, 134, 224
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	61, 380
HpyCH4III	ACNGT	3 cut(s)	166, 198, 463
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	4 cut(s)	22, 214, 392, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 389, 449
HpyF3I	CTNAG	3 cut(s)	189, 218, 418
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	4 cut(s)	124, 157, 255, 396
Kzo9I	GATC	1 cut(s)	509
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	380, 530
LpnPI	CCDG	9 cut(s)	109, 173, 188, 240, 257, 283, 335, 340, 470
Lsp1109I	GCAGC	2 cut(s)	226, 464
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	107, 198
MalI	GATC	1 cut(s)	511
MboI	GATC	1 cut(s)	509
MboII	GAAGA	2 cut(s)	437, 530
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	5 cut(s)	35, 54, 190, 248, 424
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	185, 389, 449
NciI	CCSGG	1 cut(s)	328
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	1 cut(s)	509
NlaIII	CATG	4 cut(s)	124, 157, 255, 396
NlaIV	GGNNCC	2 cut(s)	174, 366
NmeAIII	GCCGAG	1 cut(s)	161
NspI	RCATGY	1 cut(s)	396
NspV	TTCGAA	1 cut(s)	333
PaeI	GCATGC	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	206, 335
PkrI	GCNGC	4 cut(s)	187, 216, 454, 493
PleI	GAGTC	1 cut(s)	430
PmaCI	CACGTG	1 cut(s)	265
PmlI	CACGTG	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	265
PsiI	TTATAA	1 cut(s)	414
PspCI	CACGTG	1 cut(s)	265
PspEI	GGTNACC	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	174, 366
PspPI	GGNCC	2 cut(s)	70, 255
PstI	CTGCAG	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	450
SatI	GCNGC	4 cut(s)	186, 215, 453, 492
Sau3AI	GATC	1 cut(s)	509
Sau96I	GGNCC	2 cut(s)	70, 255
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	328
SetI	ASST	8 cut(s)	27, 53, 195, 219, 229, 267, 435, 537
SfcI	CTRYAG	1 cut(s)	212
SfuI	TTCGAA	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	396
SsiI	CCGC	4 cut(s)	143, 177, 186, 491
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	3 cut(s)	166, 198, 463
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	333
TauI	GCSGC	2 cut(s)	188, 494
TfiI	GAWTC	2 cut(s)	206, 335
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	2 cut(s)	214, 452
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	226
XceI	RCATGY	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.