Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008707

Physical Location & Seq

Genomic Coordinates Forward (+)

17224078 .. 17226343

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG196100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCAATGAACTCCTTACTGCACCTCCCTAAACCCCATTTCCCTCCAACCTTCCCTACACACCCAAAGCCCCAAACCCAACTCTCAAAGTCCACCAGTCAATATGGTAACCCGAAAACCATGGTGGGTAGTCTACTCGGGGCGGGTCTGACCCTGACCCTGACCGTTATGGCACCCGCCTCGGCCGCTGAGCTACCGTTACTGGATTCTCTGCAGCTCAGTGAACCTGCCAATGCCCTCTCCCTGCCCACATGGGCCATACACGTGTCCAGTGTCGTTGAATGCAATGGTGTTGGTGTGGCAGTATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2499

Protein Analysis

103

Amino Acids

10.81

Weight (kDa)

6.89

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22830 AT4G22830
fragaria_vesca	FvH4_5g00940 FvH4_5g00940 FvH4_5g00940 FvH4_5g00940 FvH4_5g00940
malus_domestica	MD06G1068000.v1.1
prunus_persica	Prupe.5G082400_v2.0.a1 Prupe.5G082400_v2.0.a1 Prupe.5G082400_v2.0.a1
pyrus_communis	pycom06g06530
rosa_chinensis	RchiOBHm_Chr7g0200451
rosa_laevigata	RLG00000003724
rosa_multiflora	Rmu_co8238855.1_g000001 Rmu_sc0000617.1_g000028 Rmu_sc0002613.1_g000002
rosa_roxburghii	Rroxscaffold_3G00255960
rosa_rugosa	Rorug07G0060300
rosa_samantha	Rh7AG185800 Rh7CG196100 Rh7DG189900
rosa_wichuraiana	Rw7G016290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	3 cut(s)	143, 177, 186
AcoI	YGGCCR	1 cut(s)	183
AcvI	CACGTG	1 cut(s)	265
AflIII	ACRYGT	2 cut(s)	262, 264
AgsI	TTSAA	1 cut(s)	281
AluBI	AGCT	2 cut(s)	193, 217
AluI	AGCT	2 cut(s)	193, 217
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	183, 255
ApeKI	GCWGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	255
AvaI	CYCGRG	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	172
BbrPI	CACGTG	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BfmI	CTRYAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	2 cut(s)	186, 215
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	2 cut(s)	187, 216
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	174
Bpu1102I	GCTNAGC	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	120, 180
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bse1I	ACTGG	3 cut(s)	96, 207, 270
Bse3DI	GCAATG	2 cut(s)	12, 292
BseDI	CCNNGG	2 cut(s)	120, 180
BseMI	GCAATG	2 cut(s)	12, 292
BseMII	CTCAG	2 cut(s)	180, 232
BseNI	ACTGG	3 cut(s)	96, 207, 270
BseX3I	CGGCCG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	5
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	185, 257
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	185, 257
BsoBI	CYCGRG	1 cut(s)	137
Bsp1720I	GCTNAGC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	3 cut(s)	143, 177, 186
BspANI	GGCC	2 cut(s)	185, 257
BspCNI	CTCAG	2 cut(s)	181, 231
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	12, 292
BsrI	ACTGG	3 cut(s)	96, 207, 270
BssECI	CCNNGG	2 cut(s)	120, 180
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	166, 198
BstBAI	YACGTR	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	189, 218
BstDSI	CCRYGG	1 cut(s)	120
BstEII	GGTNACC	1 cut(s)	107
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	226
BstZI	CGGCCG	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	185, 257
BtgI	CCRYGG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	226, 277
BveI	ACCTGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	255
CviAII	CATG	2 cut(s)	121, 252
CviJI	RGCY	5 cut(s)	70, 185, 193, 217, 257
CviKI_1	RGCY	5 cut(s)	70, 185, 193, 217, 257
DdeI	CTNAG	2 cut(s)	189, 218
EaeI	YGGCCR	1 cut(s)	183
EagI	CGGCCG	1 cut(s)	183
EclXI	CGGCCG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	120
Eco52I	CGGCCG	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	107
EcoO65I	GGTNACC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	124, 255
FaiI	YATR	6 cut(s)	105, 122, 170, 253, 260, 307
FatI	CATG	2 cut(s)	120, 251
FauI	CCCGC	2 cut(s)	136, 184
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	186, 215
Fsp4HI	GCNGC	2 cut(s)	186, 215
GluI	GCNGC	2 cut(s)	186, 215
HaeIII	GGCC	2 cut(s)	185, 257
Hin1II	CATG	2 cut(s)	124, 255
HinfI	GANTC	1 cut(s)	206
Hpy166II	GTNNAC	3 cut(s)	93, 134, 224
Hpy188I	TCNGA	1 cut(s)	150
Hpy8I	GTNNAC	3 cut(s)	93, 134, 224
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	166, 198
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	22, 214, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	189, 218
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	124, 255
LpnPI	CCDG	7 cut(s)	109, 167, 173, 188, 240, 257, 283
Lsp1109I	GCAGC	1 cut(s)	226
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	107, 198
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	35, 54, 190, 248
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	120
NlaIII	CATG	2 cut(s)	124, 255
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	161
PctI	GAATGC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	187, 216
PmaCI	CACGTG	1 cut(s)	265
PmlI	CACGTG	1 cut(s)	265
Ppu21I	YACGTR	1 cut(s)	265
PspCI	CACGTG	1 cut(s)	265
PspEI	GGTNACC	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	263
SatI	GCNGC	2 cut(s)	186, 215
Sau96I	GGNCC	1 cut(s)	255
SetI	ASST	6 cut(s)	27, 53, 195, 219, 229, 267
SfcI	CTRYAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	263
SsiI	CCGC	3 cut(s)	143, 177, 186
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	166, 198
TaiI	ACGT	1 cut(s)	267
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	206
TscAI	CASTG	2 cut(s)	226, 277
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	226, 277
XmiI	GTMKAC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.