Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002646.1

Orthogroup ID

OG0012738

Physical Location & Seq

Genomic Coordinates Reverse (-)

94617 .. 96100

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgcttggttggtgtttagatgggtctgagtttgggtttggggtttggttgagtttggatttggagggaagaaatgccttggtcactcatctcagttcagtttgcatctccaatctcaggtttctagatctgaaaacaatgtcgaatccaaaggttttctttgatgtactgattggaaggatgaaagcgggtcgcattgtaatggagttatttgctgatgtgacaccaaaaactgctgagaacttccgtgccctttgcactggtgataaggggattggaatgtccgggaagccactgcactacaagggctctgtatttcaccgcattatcccaaatttcatgtgtcaaggtggagatttcacaagaggtaatgggactggaggagagtccatctatggtgcgaaatttgcagatgagaacttcaagctgaagcatacaggacccgggattctgtccatggcaaatgctggaccgaacactaatggttctcagttcttcatttgcacagagaggaccccgtggcttgatggaaaacatgttgtctttgggaaagtggttgatggttatagcgttgttcaaaagatggaaaaggttggttcagattcagggacgactacagaacctgtggttattgaagattgtggtcagataacagagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

220

Amino Acids

23.9

Weight (kDa)

6.51

Isoelectric Point (pI)

19.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	62 - 215	5.6e-51	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56070 AT3G56070
fragaria_vesca	FvH4_4g00620 FvH4_4g00620 FvH4_6g02290
malus_domestica	MD04G1228500.v1.1
prunus_persica	Prupe.6G348500_v2.0.a1
pyrus_communis	pycom04g20270 pycom12g22510
rosa_chinensis	RchiOBHm_Chr3g0450041
rosa_laevigata	RLG00000025762 RLG00000025763
rosa_multiflora	Rmu_sc0002646.1_g000022
rosa_roxburghii	Rroxscaffold_6G00427830
rosa_rugosa	Rorug02G0625000
rosa_samantha	Rh3BG024700 Rh3DG024700
rosa_wichuraiana	Rw3G001920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	188, 322
AcsI	RAATTY	2 cut(s)	334, 404
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	3 cut(s)	424, 578, 635
AluBI	AGCT	1 cut(s)	427
AluI	AGCT	1 cut(s)	427
AlwNI	CAGNNNCTG	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	443
ApoI	RAATTY	2 cut(s)	334, 404
AspS9I	GGNCC	3 cut(s)	440, 470, 513
AsuC2I	CCSGG	3 cut(s)	286, 444, 445
AsuHPI	GGTGA	2 cut(s)	275, 311
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	3 cut(s)	440, 470, 513
BaeGI	GKGCMC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	311
BccI	CCATC	5 cut(s)	14, 398, 521, 554, 577
BcnI	CCSGG	3 cut(s)	286, 444, 445
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	615
BglII	AGATCT	1 cut(s)	127
Bme1390I	CCNGG	3 cut(s)	286, 444, 445
Bme18I	GGWCC	3 cut(s)	440, 470, 513
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	3 cut(s)	440, 470, 513
BmiI	GGNNCC	2 cut(s)	442, 515
BmrFI	CCNGG	3 cut(s)	286, 444, 445
BmsI	GCATC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	399
BpuMI	CCSGG	3 cut(s)	286, 444, 445
BsaJI	CCNNGG	4 cut(s)	78, 443, 456, 518
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	265, 382
BseDI	CCNNGG	4 cut(s)	78, 443, 456, 518
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	5 cut(s)	18, 106, 130, 228, 503
BseNI	ACTGG	2 cut(s)	265, 382
BseRI	GAGGAG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	285, 444
BslFI	GGGAC	2 cut(s)	388, 622
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	388, 622
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	253, 311
Bsp143I	GATC	1 cut(s)	127
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	2 cut(s)	188, 322
BspCNI	CTCAG	5 cut(s)	19, 105, 129, 229, 502
BspLI	GGNNCC	2 cut(s)	442, 515
BsrI	ACTGG	2 cut(s)	265, 382
BssECI	CCNNGG	4 cut(s)	78, 443, 456, 518
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	2 cut(s)	78, 456
BstDEI	CTNAG	5 cut(s)	27, 92, 116, 237, 489
BstDSI	CCRYGG	2 cut(s)	456, 518
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	539
BstSCI	CCNGG	3 cut(s)	284, 442, 443
BstSFI	CTRYAG	1 cut(s)	615
BstSLI	GKGCMC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BtgI	CCRYGG	2 cut(s)	456, 518
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	2 cut(s)	258, 293
CaiI	CAGNNNCTG	1 cut(s)	623
Cfr13I	GGNCC	3 cut(s)	440, 470, 513
Cfr9I	CCCGGG	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	3 cut(s)	340, 457, 536
CviJI	RGCY	4 cut(s)	292, 309, 427, 523
CviKI_1	RGCY	4 cut(s)	292, 309, 427, 523
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	5 cut(s)	27, 92, 116, 237, 489
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	78, 456
Eco24I	GRGCYC	1 cut(s)	311
Eco47I	GGWCC	3 cut(s)	440, 470, 513
Eco57I	CTGAAG	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	443
EcoO109I	RGGNCCY	2 cut(s)	440, 513
EcoT14I	CCWWGG	2 cut(s)	78, 456
EcoT38I	GRGCYC	1 cut(s)	311
ErhI	CCWWGG	2 cut(s)	78, 456
FaeI	CATG	3 cut(s)	343, 460, 539
FaiI	YATR	6 cut(s)	341, 396, 435, 458, 537, 567
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	2 cut(s)	388, 622
FatI	CATG	3 cut(s)	339, 456, 535
FauI	CCCGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	193
FriOI	GRGCYC	1 cut(s)	311
FspBI	CTAG	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	399
HapII	CCGG	2 cut(s)	285, 444
Hin1II	CATG	3 cut(s)	343, 460, 539
HinfI	GANTC	4 cut(s)	145, 386, 448, 602
HpaII	CCGG	2 cut(s)	285, 444
HphI	GGTGA	2 cut(s)	275, 311
Hpy188I	TCNGA	4 cut(s)	28, 132, 601, 648
Hpy188III	TCNNGA	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	105, 258, 298, 410, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	5 cut(s)	27, 92, 116, 237, 489
Hsp92II	CATG	3 cut(s)	343, 460, 539
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	9 cut(s)	103, 246, 298, 363, 423, 453, 457, 591, 636
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	82, 220
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	3 cut(s)	81, 487, 647
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	2 cut(s)	253, 311
MluCI	AATT	2 cut(s)	334, 404
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	4 cut(s)	58, 359, 374, 504
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	2 cut(s)	285, 444
MspR9I	CCNGG	3 cut(s)	286, 444, 445
MwoI	GCNNNNNNNGC	1 cut(s)	407
NciI	CCSGG	3 cut(s)	286, 444, 445
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	343, 460, 539
NlaIV	GGNNCC	2 cut(s)	442, 515
NmuCI	GTSAC	2 cut(s)	82, 220
NspI	RCATGY	1 cut(s)	539
PciI	ACATGT	1 cut(s)	535
PfeI	GAWTC	3 cut(s)	145, 448, 602
PfoI	TCCNGGA	1 cut(s)	284
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PpuMI	RGGWCCY	2 cut(s)	440, 513
PscI	ACATGT	1 cut(s)	535
Psp5II	RGGWCCY	2 cut(s)	440, 513
PspN4I	GGNNCC	2 cut(s)	442, 515
PspPI	GGNCC	3 cut(s)	440, 470, 513
PspPPI	RGGWCCY	2 cut(s)	440, 513
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	3 cut(s)	440, 470, 513
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	3 cut(s)	286, 444, 445
SduI	GDGCHC	2 cut(s)	253, 311
SetI	ASST	7 cut(s)	122, 156, 352, 370, 429, 594, 625
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	3 cut(s)	440, 470, 513
SmaI	CCCGGG	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	334, 404
SsiI	CCGC	2 cut(s)	188, 322
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	3 cut(s)	284, 442, 443
StyI	CCWWGG	2 cut(s)	78, 456
TaqI	TCGA	1 cut(s)	143
TaqII	GACCGA	1 cut(s)	487
TasI	AATT	2 cut(s)	334, 404
TatI	WGTACW	1 cut(s)	166
TfiI	GAWTC	3 cut(s)	145, 448, 602
TscAI	CASTG	2 cut(s)	265, 300
TseFI	GTSAC	2 cut(s)	82, 220
Tsp45I	GTSAC	2 cut(s)	82, 220
TspDTI	ATGAA	3 cut(s)	197, 328, 487
TspGWI	ACGGA	1 cut(s)	236
TspMI	CCCGGG	1 cut(s)	443
TspRI	CASTG	2 cut(s)	265, 300
VpaK11BI	GGWCC	3 cut(s)	440, 470, 513
XapI	RAATTY	2 cut(s)	334, 404
XbaI	TCTAGA	1 cut(s)	124
XceI	RCATGY	1 cut(s)	539
XmaI	CCCGGG	1 cut(s)	443
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.