Rmu_sc0002863.1_g000035

Pentatricopeptide repeat-containing protein At4g01400, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002863.1
OG0011389
Physical Location & Seq
Forward (+)
123119 .. 124069
951 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 951 bp
atgctccaattcgactgcaaaccctctgtcaagcacctcaaccggattctcgacattctggtctgtcaccggaacttcctccggcctgctttcgacgttttcaaggacgcccaccgccacggggtggcgccggatactaaatcctacaacatcctgatgagggcgttctgtttgaatggggacctcagtgttgcataccacctgttcaacaaaatgtttgagagagaggttgtgccggatgtggagtcgtatcggattttgatgcaggggctgtgcaggaaggggcaggtgaacactgctgtggattttctggaggatatgatcaacaaagggttcgttccggattcgctgagttatactagcttgttgaatagcttgtgtaggaagaaacagctgcgtgaggcgtataagcttctttgtaggatgagggtgaaggggtgtaaccctgacattgtgcattacaatactgtgatattggggttttgtagagaagggagggcagtggatgcttgtaaggttcttgaggatatggcatccaatgggtgcttgccgaatttggtgtcgtataggactttggttagtgggttgtctgatcaggggatgcttgatgaggcgaagaactatatggagacaatgatatcaaaggggttttctccacatttttcggttatccatgctttggttaaggggttctgcaatgtgggaagggtcgaggaagcttgtggagttatggaggagatactaacgcatggggaggttccgcacagggagacttggttgacaatagttccagggatatgcgaagaggttgagctgttgagaatggaagaagttctgaaggaaataatgaaggtagagatcaagcctagcaccagaatagtggaggcagcttttggattggagaactacttgatcaaaaaaattcatgctagtaaatcaaggagagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

316

Amino Acids

35.96

Weight (kDa)

8.18

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 10 - 57 6.2e-07 PPR repeat family
PPR_long PF17177 24 - 137 1.8e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 33 - 89 2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 41 - 72 6.7e-08 PPR repeat
PPR_2 PF13041 44 - 93 1.2e-14 PPR repeat family
PPR_1 PF12854 76 - 107 1.2e-08 PPR repeat
PPR_2 PF13041 79 - 128 5.6e-15 PPR repeat family
PPR_3 PF13812 104 - 162 1.6e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 110 - 143 1.1e-08 PPR repeat
PPR_2 PF13041 114 - 151 1.3e-09 PPR repeat family
PPR PF01535 118 - 147 5.6e-07 PPR repeat
PPR_long PF17177 129 - 262 3.3e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 145 - 177 7.3e-12 PPR repeat
PPR_2 PF13041 149 - 197 2.5e-14 PPR repeat family
PPR PF01535 152 - 182 4e-06 PPR repeat
PPR_1 PF12854 180 - 212 4.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01400
fragaria_vesca FvH4_7g17740 FvH4_7g17740 FvH4_7g17740
malus_domestica MD01G1088700.v1.1
prunus_persica Prupe.2G196300_v2.0.a1
pyrus_communis pycom01g11310
rosa_chinensis RchiOBHm_Chr1g0361141
rosa_laevigata RLG00000027746
rosa_multiflora Rmu_sc0002863.1_g000035 Rmu_sc0020096.1_g000003
rosa_roxburghii Rroxscaffold_4G00295390
rosa_rugosa Rorug01G0286000 Rorug02G0035000
rosa_samantha Rh1AG297500 Rh1BG261600 Rh1CG278900 Rh1DG291400
rosa_wichuraiana Rw1G026270 Rw1G026900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 277
AasI GACNNNNNNGTC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 277
AccB1I GGYRCC 1 cut(s) 127
AccB7I CCANNNNNTGG 2 cut(s) 124, 679
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 2 cut(s) 115, 761
AcsI RAATTY 2 cut(s) 553, 921
AcuI CTGAAG 1 cut(s) 857
AcyI GRCGYC 2 cut(s) 108, 128
AdeI CACNNNGTG 1 cut(s) 124
AfiI CCNNNNNNNGG 4 cut(s) 121, 124, 160, 679
AgsI TTSAA 4 cut(s) 103, 175, 208, 370
AjnI CCWGG 1 cut(s) 790
AleI CACNNNNGTG 1 cut(s) 299
AluBI AGCT 8 cut(s) 363, 375, 394, 412, 719, 814, 890, 947
AluI AGCT 8 cut(s) 363, 375, 394, 412, 719, 814, 890, 947
Alw26I GTCTC 2 cut(s) 623, 764
AlwNI CAGNNNCTG 1 cut(s) 271
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 2 cut(s) 394, 887
ApoI RAATTY 2 cut(s) 553, 921
ArsI GACNNNNNNTTYG 4 cut(s) 12, 44, 545, 577
Asp700I GAANNNNTTC 1 cut(s) 831
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 3 cut(s) 59, 301, 442
AvaII GGWCC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 381, 899
BciT130I CCWGG 1 cut(s) 792
BciVI GTATCC 1 cut(s) 127
BclI TGATCA 3 cut(s) 321, 592, 912
BcoDI GTCTC 2 cut(s) 623, 764
BfaI CTAG 3 cut(s) 360, 867, 930
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 277
BfuI GTATCC 1 cut(s) 127
BisI GCNGC 2 cut(s) 395, 888
BlsI GCNGC 2 cut(s) 396, 889
Bme1390I CCNGG 1 cut(s) 792
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 3 cut(s) 129, 182, 759
BmrFI CCNGG 1 cut(s) 792
BmsI GCATC 4 cut(s) 252, 496, 542, 591
BpmI CTGGAG 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 542
BsaHI GRCGYC 2 cut(s) 108, 128
BsaJI CCNNGG 2 cut(s) 118, 791
BsaWI WCCGGW 3 cut(s) 42, 69, 340
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 124, 160, 679
Bse3DI GCAATG 1 cut(s) 703
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 1 cut(s) 792
BseDI CCNNGG 2 cut(s) 118, 791
BseGI GGATG 6 cut(s) 150, 244, 429, 511, 533, 606
BseLI CCNNNNNNNGG 4 cut(s) 121, 124, 160, 679
BseMI GCAATG 1 cut(s) 703
BseMII CTCAG 2 cut(s) 199, 341
BseRI GAGGAG 1 cut(s) 749
BseXI GCAGC 2 cut(s) 381, 899
BsgI GTGCAG 1 cut(s) 295
BshFI GGCC 1 cut(s) 85
BshNI GGYRCC 1 cut(s) 127
BsiSI CCGG 6 cut(s) 43, 70, 82, 131, 236, 341
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 4 cut(s) 121, 124, 160, 679
BsmAI GTCTC 2 cut(s) 623, 764
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 1 cut(s) 85
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 4 cut(s) 321, 592, 858, 912
BspACI CCGC 2 cut(s) 115, 761
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 2 cut(s) 198, 342
BspEI TCCGGA 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 129, 182, 759
BspMI ACCTGC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 703
BssECI CCNNGG 2 cut(s) 118, 791
BssMI GATC 4 cut(s) 321, 592, 858, 912
BssNI GRCGYC 2 cut(s) 108, 128
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 1 cut(s) 798
BstACI GRCGYC 2 cut(s) 108, 128
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 87, 548
BstDEI CTNAG 2 cut(s) 185, 350
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 6 cut(s) 150, 244, 429, 511, 533, 606
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 4 cut(s) 324, 595, 861, 915
BstMAI GTCTC 2 cut(s) 623, 764
BstMBI GATC 4 cut(s) 321, 592, 858, 912
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 1 cut(s) 792
BstSCI CCNGG 1 cut(s) 790
BstV1I GCAGC 2 cut(s) 381, 899
BstXI CCANNNNNNTGG 1 cut(s) 880
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 85
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 6 cut(s) 150, 244, 429, 511, 533, 606
BtsI GCAGTG 2 cut(s) 294, 507
BtsIMutI CAGTG 3 cut(s) 193, 294, 507
BveI ACCTGC 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 87, 548
CaiI CAGNNNCTG 1 cut(s) 271
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 116
CviAII CATG 3 cut(s) 674, 749, 926
DdeI CTNAG 2 cut(s) 185, 350
DinI GGCGCC 1 cut(s) 129
DpnI GATC 4 cut(s) 323, 594, 860, 914
DpnII GATC 4 cut(s) 321, 592, 858, 912
DraIII CACNNNGTG 1 cut(s) 124
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 798
EarI CTCTTC 1 cut(s) 798
Eco32I GATATC 1 cut(s) 639
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 857
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 790
EcoRV GATATC 1 cut(s) 639
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
FaeI CATG 3 cut(s) 677, 752, 929
FalI AAGNNNNNCTT 1 cut(s) 931
FaqI GGGAC 1 cut(s) 194
FatI CATG 3 cut(s) 673, 748, 925
FbaI TGATCA 3 cut(s) 321, 592, 912
Fnu4HI GCNGC 2 cut(s) 395, 888
FokI GGATG 6 cut(s) 137, 251, 436, 518, 520, 613
Fsp4HI GCNGC 2 cut(s) 395, 888
FspBI CTAG 3 cut(s) 360, 867, 930
GlaI GCGC 1 cut(s) 129
GluI GCNGC 2 cut(s) 395, 888
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 1 cut(s) 85
HapII CCGG 6 cut(s) 43, 70, 82, 131, 236, 341
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 2 cut(s) 108, 128
Hin1II CATG 3 cut(s) 677, 752, 929
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HindIII AAGCTT 2 cut(s) 410, 717
HinfI GANTC 3 cut(s) 46, 245, 344
HpaII CCGG 6 cut(s) 43, 70, 82, 131, 236, 341
HphI GGTGA 3 cut(s) 59, 301, 442
Hpy166II GTNNAC 2 cut(s) 292, 780
Hpy188I TCNGA 3 cut(s) 255, 592, 837
Hpy188III TCNNGA 5 cut(s) 50, 154, 311, 341, 521
Hpy8I GTNNAC 2 cut(s) 292, 780
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 6 cut(s) 274, 427, 485, 699, 832, 844
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 6 cut(s) 18, 194, 265, 276, 457, 696
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 2 cut(s) 185, 350
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 2 cut(s) 108, 128
Hsp92II CATG 3 cut(s) 677, 752, 929
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
Kpn2I TCCGGA 1 cut(s) 340
Ksp22I TGATCA 3 cut(s) 321, 592, 912
Kzo9I GATC 4 cut(s) 321, 592, 858, 912
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 2 cut(s) 381, 899
LweI GCATC 4 cut(s) 252, 496, 542, 591
MaeI CTAG 3 cut(s) 360, 867, 930
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 65, 440
MalI GATC 4 cut(s) 323, 594, 860, 914
MboI GATC 4 cut(s) 321, 592, 858, 912
MboII GAAGA 4 cut(s) 397, 628, 815, 839
MluCI AATT 3 cut(s) 8, 553, 921
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 1 cut(s) 254
MroI TCCGGA 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 831
MseI TTAA 1 cut(s) 684
MslI CAYNNNNRTG 2 cut(s) 155, 299
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 6 cut(s) 43, 70, 82, 131, 236, 341
MspR9I CCNGG 1 cut(s) 792
MvaI CCWGG 1 cut(s) 792
MwoI GCNNNNNNNGC 1 cut(s) 506
NarI GGCGCC 1 cut(s) 128
NdeII GATC 4 cut(s) 321, 592, 858, 912
NlaIII CATG 3 cut(s) 677, 752, 929
NlaIV GGNNCC 3 cut(s) 129, 182, 759
NmuCI GTSAC 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 299
PaqCI CACCTGC 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 831
PfeI GAWTC 2 cut(s) 46, 344
PflMI CCANNNNNTGG 2 cut(s) 124, 679
PkrI GCNGC 2 cut(s) 396, 889
PleI GAGTC 1 cut(s) 253
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 253
PpuMI RGGWCCY 1 cut(s) 181
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 790
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 3 cut(s) 129, 182, 759
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 394
RseI CAYNNNNRTG 2 cut(s) 155, 299
SaqAI TTAA 1 cut(s) 684
SatI GCNGC 2 cut(s) 395, 888
Sau3AI GATC 4 cut(s) 321, 592, 858, 912
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 792
SfaNI GCATC 4 cut(s) 252, 496, 542, 591
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 2 cut(s) 155, 299
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 3 cut(s) 8, 553, 921
SsiI CCGC 2 cut(s) 115, 761
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 3 cut(s) 360, 867, 930
StyD4I CCNGG 1 cut(s) 790
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 1 cut(s) 99
TaqI TCGA 4 cut(s) 12, 51, 93, 711
TasI AATT 3 cut(s) 8, 553, 921
TfiI GAWTC 2 cut(s) 46, 344
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 3 cut(s) 193, 301, 507
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 2 cut(s) 394, 887
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 863, 914
TspRI CASTG 3 cut(s) 193, 301, 507
Van91I CCANNNNNTGG 2 cut(s) 124, 679
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 2 cut(s) 553, 921
XmnI GAANNNNTTC 1 cut(s) 831
XspI CTAG 3 cut(s) 360, 867, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.