Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002938.1

Orthogroup ID

OG0018624

Physical Location & Seq

Genomic Coordinates Forward (+)

172105 .. 173447

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002938.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgctactgatggtgtactctatacccagatacattgatgtgactcacacacttcttgagtttttgttccttcttgtggacagttatgatgtagaacataaagatataattattagaggcgtgccttcatctcttcgtgtttcccaggcactggcacttctgggcgaatacatagataaagaagatccatctatccgaattggtgcaataatgggtctagggattgcatatgctggtgatgagaacgagcaggaggtggctcaggcaatcatatttgcactaatggaccgaagtgaagctgagttaggggagccccttgctcgcctaatacccctcagcctaggtcttctgtatcttgggaagcaggttcaaaaccttcttggccattgttcacaacatcttgagaagggtgaaacacaccaggggcctgcagtgcttggtattgcgatgatagtaatggctgaagagttgggacttgaaatggcaattcgttcgttggagcatcttctacagtatggagaacaaaatatccgtcgggcagttcctttggctcttggtctcctttgcatatcaaatccaaaggtattaatctgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

198

Amino Acids

21.81

Weight (kDa)

4.9

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018624)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267101
rosa_multiflora	Rmu_sc0002938.1_g000048 Rmu_ssc0000388.1_g000014
rosa_roxburghii	Rroxscaffold_3G00230360
rosa_samantha	Rh4AG209500 Rh6BG151700 Rh6CG147200 Rh6CG147300 Rh6DG135800
rosa_wichuraiana	Rw6G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	151
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	76, 151
AgsI	TTSAA	2 cut(s)	371, 479
AjnI	CCWGG	2 cut(s)	144, 420
AloI	GAACNNNNNNTCC	2 cut(s)	513, 545
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	2 cut(s)	382, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	517, 549
AseI	ATTAAT	1 cut(s)	587
AspA2I	CCTAGG	1 cut(s)	340
AspS9I	GGNCC	2 cut(s)	286, 425
AsuHPI	GGTGA	2 cut(s)	248, 422
AvaII	GGWCC	1 cut(s)	286
AvrII	CCTAGG	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	338
BbvCI	CCTCAGC	1 cut(s)	335
BccI	CCATC	2 cut(s)	4, 196
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BciT130I	CCWGG	2 cut(s)	146, 422
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	2 cut(s)	218, 341
BfmI	CTRYAG	2 cut(s)	429, 509
BfuAI	ACCTGC	1 cut(s)	355
BlnI	CCTAGG	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	146, 422
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	286, 425
BmiI	GGNNCC	2 cut(s)	312, 426
BmrFI	CCNGG	2 cut(s)	146, 422
BmsI	GCATC	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	338
Bpu10I	CCTNAGC	2 cut(s)	261, 335
BpuEI	CTTGAG	2 cut(s)	77, 422
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	3 cut(s)	144, 340, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 151
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	146, 422
BseDI	CCNNGG	3 cut(s)	144, 340, 421
BseLI	CCNNNNNNNGG	2 cut(s)	76, 151
BseMII	CTCAG	3 cut(s)	275, 291, 349
BseNI	ACTGG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	384, 427
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	76, 151
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	2 cut(s)	384, 427
Bso31I	GGTCTC	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	184
BspANI	GGCC	2 cut(s)	384, 427
BspCNI	CTCAG	3 cut(s)	274, 292, 348
BspLI	GGNNCC	2 cut(s)	312, 426
BspMAI	CTGCAG	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	3 cut(s)	144, 340, 421
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	2 cut(s)	146, 422
Bst4CI	ACNGT	2 cut(s)	83, 513
Bst6I	CTCTTC	2 cut(s)	138, 459
BstC8I	GCNNGC	3 cut(s)	122, 322, 429
BstDEI	CTNAG	3 cut(s)	261, 300, 335
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNI	CCWGG	2 cut(s)	146, 422
BstSCI	CCNGG	2 cut(s)	144, 420
BstSFI	CTRYAG	2 cut(s)	429, 509
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	384, 427
BtgZI	GCGATG	1 cut(s)	461
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	2 cut(s)	149, 438
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	122, 322, 429
CaiI	CAGNNNCTG	1 cut(s)	151
Cfr13I	GGNCC	2 cut(s)	286, 425
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	8 cut(s)	260, 299, 313, 339, 384, 427, 461, 551
CviKI_1	RGCY	8 cut(s)	260, 299, 313, 339, 384, 427, 461, 551
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	3 cut(s)	261, 300, 335
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	138, 459
EarI	CTCTTC	2 cut(s)	138, 459
Eco130I	CCWWGG	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	563
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	144, 420
EcoT14I	CCWWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	340
FaqI	GGGAC	1 cut(s)	486
FauNDI	CATATG	1 cut(s)	229
FriOI	GRGCYC	1 cut(s)	315
FspBI	CTAG	2 cut(s)	218, 341
HaeIII	GGCC	2 cut(s)	384, 427
HinfI	GANTC	1 cut(s)	43
HphI	GGTGA	2 cut(s)	248, 422
Hpy166II	GTNNAC	3 cut(s)	16, 79, 392
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	56, 401
Hpy8I	GTNNAC	3 cut(s)	16, 79, 392
Hpy99I	CGWCG	1 cut(s)	537
HpyAV	CCTTC	4 cut(s)	80, 135, 386, 400
HpyCH4III	ACNGT	2 cut(s)	83, 513
HpyCH4V	TGCA	5 cut(s)	206, 227, 278, 431, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	3 cut(s)	261, 300, 335
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	310, 499
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	2 cut(s)	218, 341
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	5 cut(s)	125, 194, 338, 476, 497
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	315
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	3 cut(s)	108, 198, 486
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	3 cut(s)	110, 247, 344
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	1 cut(s)	587
MslI	CAYNNNNRTG	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	384
MspR9I	CCNGG	2 cut(s)	146, 422
MvaI	CCWGG	2 cut(s)	146, 422
MwoI	GCNNNNNNNGC	1 cut(s)	433
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	1 cut(s)	184
NlaIV	GGNNCC	2 cut(s)	312, 426
NmuCI	GTSAC	1 cut(s)	40
PflMI	CCANNNNNTGG	1 cut(s)	151
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	144, 420
PspGI	CCWGG	2 cut(s)	144, 420
PspN4I	GGNNCC	2 cut(s)	312, 426
PspPI	GGNCC	2 cut(s)	286, 425
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	587
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	2 cut(s)	286, 425
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	146, 422
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	6 cut(s)	258, 301, 346, 369, 378, 585
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	2 cut(s)	429, 509
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	56, 401
SmoI	CTYRAG	2 cut(s)	56, 401
Sse9I	AATT	3 cut(s)	108, 198, 486
SspMI	CTAG	2 cut(s)	218, 341
StyD4I	CCNGG	2 cut(s)	144, 420
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	83, 513
TaqII	GACCGA	1 cut(s)	303
TasI	AATT	3 cut(s)	108, 198, 486
TatI	WGTACW	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	2 cut(s)	156, 438
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	2 cut(s)	156, 438
Van91I	CCANNNNNTGG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	286
VspI	ATTAAT	1 cut(s)	587
XmaJI	CCTAGG	1 cut(s)	340
XspI	CTAG	2 cut(s)	218, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.