Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018624

Physical Location & Seq

Genomic Coordinates Forward (+)

15171665 .. 15172323

Gene Structure 659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATGACAGTTGAACCACCAAAAGATCATTGGCTTTTCAAGAATAAGGAGCATGGAAAGATCAGCGCTGCTGCAAGTCACCTCTTGTGGGATGTTGATTCTGGATTTGCCCACATTGACAAGTACTTGCACAGCAATGACAACTATGTTATTACCGGTGCCTTGTTAGGGATTGGAATTTTCAATTGTGGTATCAAACATGATTGTGATCCGGCGCTGGCAATTTTAGGGGAATATGTAGATAAAGAAGATCCATCTATCCACATTGGTGCAATAATGGGACTAGGGATTGCATATGCTGGTTCACGAAATGAGCGAGATAGAGGTGGCTCAAGCTATCATACTTGCACTAATGGACCGAATCGACGCGAGTTGGGAGAACCCCTTGCTCGCCTAATTTTGGTTAGCCTTGGCCTTGTGTACCTTGGGAAGCAAGACAACGTTGAAGCCACTGCTCAAGTTTCACGGACATTTAATGAAAAAATCAAAATACATTGTGATATGACTCTGCTTTCTTGTGCATCTAATGCCATCGCACATGCCTTTGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

184

Amino Acids

20.06

Weight (kDa)

6.18

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018624)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267101
rosa_multiflora	Rmu_sc0002938.1_g000048 Rmu_ssc0000388.1_g000014
rosa_roxburghii	Rroxscaffold_3G00230360
rosa_samantha	Rh4AG209500 Rh6BG151700 Rh6CG147200 Rh6CG147300 Rh6DG135800
rosa_wichuraiana	Rw6G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccII	CGCG	1 cut(s)	369
AclI	AACGTT	1 cut(s)	441
AclWI	GGATC	2 cut(s)	203, 245
AcsI	RAATTY	1 cut(s)	177
AfaI	GTAC	2 cut(s)	125, 422
AfeI	AGCGCT	1 cut(s)	67
AfiI	CCNNNNNNNGG	3 cut(s)	88, 168, 400
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	14, 40, 184, 446
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
AlwI	GGATC	2 cut(s)	203, 245
Aor51HI	AGCGCT	1 cut(s)	67
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	2 cut(s)	68, 71
ApoI	RAATTY	1 cut(s)	177
AsiGI	ACCGGT	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	68, 217
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	55, 58
BccI	CCATC	2 cut(s)	262, 539
BfaI	CTAG	1 cut(s)	284
BfoI	RGCGCY	2 cut(s)	69, 218
BisI	GCNGC	2 cut(s)	69, 72
BlsI	GCNGC	2 cut(s)	70, 73
BmcAI	AGTACT	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	160
BmsI	GCATC	1 cut(s)	530
BpuEI	CTTGAG	2 cut(s)	316, 441
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	409, 424
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 168, 400
Bse118I	RCCGGY	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	409, 424
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	88, 168, 400
BseMI	GCAATG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	55, 58
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	414
BshNI	GGYRCC	1 cut(s)	158
BshTI	ACCGGT	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	156, 212
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	3 cut(s)	88, 168, 400
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	25, 60, 208, 250
BspANI	GGCC	1 cut(s)	414
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	2 cut(s)	203, 245
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	142
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	409, 424
BssMI	GATC	4 cut(s)	25, 60, 208, 250
BssT1I	CCWWGG	2 cut(s)	409, 424
Bst4CI	ACNGT	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	219, 391
BstF5I	GGATG	1 cut(s)	97
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	2 cut(s)	69, 218
BstHHI	GCGC	2 cut(s)	68, 217
BstKTI	GATC	4 cut(s)	28, 63, 211, 253
BstMBI	GATC	4 cut(s)	25, 60, 208, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstNSI	RCATGY	1 cut(s)	542
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	55, 58
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	219, 391
CfoI	GCGC	2 cut(s)	68, 217
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	356
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	124, 421
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	3 cut(s)	53, 200, 539
CviJI	RGCY	6 cut(s)	34, 330, 336, 408, 414, 449
CviKI_1	RGCY	6 cut(s)	34, 330, 336, 408, 414, 449
CviQI	GTAC	2 cut(s)	124, 421
DpnI	GATC	4 cut(s)	27, 62, 210, 252
DpnII	GATC	4 cut(s)	25, 60, 208, 250
Eco130I	CCWWGG	2 cut(s)	409, 424
Eco47I	GGWCC	1 cut(s)	356
Eco47III	AGCGCT	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	409, 424
ErhI	CCWWGG	2 cut(s)	409, 424
FaeI	CATG	3 cut(s)	56, 203, 542
FaiI	YATR	9 cut(s)	54, 147, 201, 237, 295, 297, 342, 503, 540
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	3 cut(s)	52, 199, 538
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	69, 72
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	69, 72
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	2 cut(s)	67, 216
GluI	GCNGC	2 cut(s)	69, 72
HaeII	RGCGCY	2 cut(s)	69, 218
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	2 cut(s)	156, 212
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	2 cut(s)	68, 217
Hin1II	CATG	3 cut(s)	56, 203, 542
Hin6I	GCGC	2 cut(s)	66, 215
HinP1I	GCGC	2 cut(s)	66, 215
HinfI	GANTC	3 cut(s)	98, 361, 505
HpaII	CCGG	2 cut(s)	156, 212
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	305, 421
Hpy188III	TCNNGA	3 cut(s)	40, 102, 306
Hpy8I	GTNNAC	2 cut(s)	305, 421
Hpy99I	CGWCG	1 cut(s)	369
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	7 cut(s)	74, 130, 272, 293, 348, 521, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	3 cut(s)	56, 203, 542
HspAI	GCGC	2 cut(s)	66, 215
Kzo9I	GATC	4 cut(s)	25, 60, 208, 250
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	5 cut(s)	87, 169, 203, 225, 285
Lsp1109I	GCAGC	2 cut(s)	55, 58
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	4 cut(s)	27, 62, 210, 252
MboI	GATC	4 cut(s)	25, 60, 208, 250
MboII	GAAGA	1 cut(s)	260
MfeI	CAATTG	1 cut(s)	184
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	5 cut(s)	177, 184, 222, 396, 549
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	2 cut(s)	92, 317
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	3 cut(s)	135, 204, 267
MspI	CCGG	2 cut(s)	156, 212
MunI	CAATTG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	527
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	4 cut(s)	25, 60, 208, 250
NlaIII	CATG	3 cut(s)	56, 203, 542
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	542
OliI	CACNNNNGTG	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	98, 361
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	70, 73
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp1406I	AACGTT	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	2 cut(s)	125, 422
RsaNI	GTAC	2 cut(s)	124, 421
RseI	CAYNNNNRTG	3 cut(s)	135, 204, 267
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	2 cut(s)	69, 72
Sau3AI	GATC	4 cut(s)	25, 60, 208, 250
Sau96I	GGNCC	1 cut(s)	356
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	1 cut(s)	499
SetI	ASST	5 cut(s)	84, 328, 338, 426, 444
SfaNI	GCATC	1 cut(s)	530
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	3 cut(s)	135, 204, 267
SmlI	CTYRAG	2 cut(s)	331, 456
SmoI	CTYRAG	2 cut(s)	331, 456
Sse9I	AATT	5 cut(s)	177, 184, 222, 396, 549
SspMI	CTAG	1 cut(s)	284
StyI	CCWWGG	2 cut(s)	409, 424
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	364
TaqII	GACCGA	1 cut(s)	373
TasI	AATT	5 cut(s)	177, 184, 222, 396, 549
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	98, 361
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	68, 71
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	1 cut(s)	177
XceI	RCATGY	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XspI	CTAG	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.