Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000388.1

Orthogroup ID

OG0018624

Physical Location & Seq

Genomic Coordinates Reverse (-)

58985 .. 60328

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000388.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgctactgatggtgtactctatacccagatacattgatgtgactcacacacttcttgagtttttgttccttcttgtggacagttatgatgtagaacataaagatataattattagaggcgtgccttcatctcttcgtgtttcccaggcactggcacttctgggtgaatacatagataaagaagatccatctatcaaaattggtgcaataatgggtctagggattgcatatgctggtgatgagaacgagcaggttcaaaaccttctcggccattgttcacaacatcttgagaagggtgaaacacaccaggggcctacagtgcttggtattgcgatgatagtaatggctgaagagttgggacttgaaatggcaattcgttcattggagcatcttctacagtatggagaacaaaatatccgtagagcagttcctttggctcttggtctcctttgcatatcaaatccaaaggtattaatctgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

160

Amino Acids

17.69

Weight (kDa)

5.0

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018624)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267101
rosa_multiflora	Rmu_sc0002938.1_g000048 Rmu_ssc0000388.1_g000014
rosa_roxburghii	Rroxscaffold_3G00230360
rosa_samantha	Rh4AG209500 Rh6BG151700 Rh6CG147200 Rh6CG147300 Rh6DG135800
rosa_wichuraiana	Rw6G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccB7I	CCANNNNNTGG	1 cut(s)	151
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	76, 151
AgsI	TTSAA	2 cut(s)	257, 365
AjnI	CCWGG	2 cut(s)	144, 306
AloI	GAACNNNNNNTCC	2 cut(s)	399, 431
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	2 cut(s)	268, 311
AseI	ATTAAT	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	3 cut(s)	176, 248, 308
BccI	CCATC	2 cut(s)	4, 196
BciT130I	CCWGG	2 cut(s)	146, 308
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	2 cut(s)	315, 395
BfuAI	ACCTGC	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	146, 308
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	146, 308
BmsI	GCATC	1 cut(s)	397
BpuEI	CTTGAG	2 cut(s)	77, 308
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	144, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 151
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	146, 308
BseDI	CCNNGG	2 cut(s)	144, 307
BseLI	CCNNNNNNNGG	2 cut(s)	76, 151
BseNI	ACTGG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	270, 313
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	76, 151
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	2 cut(s)	270, 313
Bso31I	GGTCTC	1 cut(s)	449
Bsp143I	GATC	1 cut(s)	184
BspANI	GGCC	2 cut(s)	270, 313
BspLI	GGNNCC	1 cut(s)	312
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	144, 307
BssMI	GATC	1 cut(s)	184
Bst2UI	CCWGG	2 cut(s)	146, 308
Bst4CI	ACNGT	3 cut(s)	83, 319, 399
Bst6I	CTCTTC	2 cut(s)	138, 345
BstC8I	GCNNGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	2 cut(s)	146, 308
BstSCI	CCNGG	2 cut(s)	144, 306
BstSFI	CTRYAG	2 cut(s)	315, 395
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	270, 313
BtgZI	GCGATG	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	149, 324
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	122
CaiI	CAGNNNCTG	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	16
CviJI	RGCY	4 cut(s)	270, 313, 347, 437
CviKI_1	RGCY	4 cut(s)	270, 313, 347, 437
CviQI	GTAC	1 cut(s)	16
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	138, 345
EarI	CTCTTC	2 cut(s)	138, 345
Eco31I	GGTCTC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	144, 306
FaiI	YATR	9 cut(s)	23, 87, 99, 107, 173, 229, 231, 402, 455
FaqI	GGGAC	1 cut(s)	372
FauNDI	CATATG	1 cut(s)	229
FspBI	CTAG	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	270, 313
HinfI	GANTC	1 cut(s)	43
HphI	GGTGA	3 cut(s)	176, 248, 308
Hpy166II	GTNNAC	3 cut(s)	16, 79, 278
Hpy188III	TCNNGA	2 cut(s)	56, 287
Hpy8I	GTNNAC	3 cut(s)	16, 79, 278
HpyAV	CCTTC	4 cut(s)	80, 135, 272, 286
HpyCH4III	ACNGT	3 cut(s)	83, 319, 399
HpyCH4V	TGCA	3 cut(s)	206, 227, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	9 cut(s)	40, 131, 137, 146, 158, 219, 236, 293, 320
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	4 cut(s)	125, 194, 362, 383
MflI	RGATCY	1 cut(s)	184
MluCI	AATT	3 cut(s)	108, 198, 372
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	1 cut(s)	110
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	146, 308
MvaI	CCWGG	2 cut(s)	146, 308
MwoI	GCNNNNNNNGC	1 cut(s)	319
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	312
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	40
PflMI	CCANNNNNTGG	1 cut(s)	151
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	473
Psp6I	CCWGG	2 cut(s)	144, 306
PspGI	CCWGG	2 cut(s)	144, 306
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	473
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	146, 308
SetI	ASST	3 cut(s)	255, 264, 471
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	2 cut(s)	315, 395
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	56, 287
SmoI	CTYRAG	2 cut(s)	56, 287
Sse9I	AATT	3 cut(s)	108, 198, 372
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	144, 306
TaaI	ACNGT	3 cut(s)	83, 319, 399
TasI	AATT	3 cut(s)	108, 198, 372
TatI	WGTACW	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	2 cut(s)	156, 324
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	117, 369
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	2 cut(s)	156, 324
Van91I	CCANNNNNTGG	1 cut(s)	151
VspI	ATTAAT	1 cut(s)	473
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.