Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0018624

Physical Location & Seq

Genomic Coordinates Reverse (-)

50164549 .. 50165839

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG209500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAATCAGGTAGATGATTCCCTCAGGAACCAAGCTGCAGAAGTATTGCAATCCATGAATGACAGATTCTCTACATGGGGCAATGTTGCATGCCAGACGGGCATTATTAATAACACTAAGCTCACCAAAGGTTTTGTTACCCTCGCTCGAGATCTTGAGCTCATGGAGGCCAAAACTCCACAGGTTATATACAAGGCACACTTGCTTGAGGGTCAAGTTCAAACCCTTCTCGGCCATTGTTCGCAACATGTTGAGGAGAAGGGTGAAACTCACCAGGGACCTGCTGTTCTTGGAATTGCTATGATAGGAATGGCTGAAGAATTGGGACTTAAAATGGCAATTCGTTCATTAGAGCAACTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0010498 GO:0014070 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030163 GO:0031597 GO:0032182 GO:0032991 GO:0034515 GO:0042221 GO:0042493 GO:0043130 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051726 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

121

Amino Acids

13.32

Weight (kDa)

5.48

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN1_RPN2_N	PF17781	33 - 68	1.9e-08	RPN1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018624)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267101
rosa_multiflora	Rmu_sc0002938.1_g000048 Rmu_ssc0000388.1_g000014
rosa_roxburghii	Rroxscaffold_3G00230360
rosa_samantha	Rh4AG209500 Rh6BG151700 Rh6CG147200 Rh6CG147300 Rh6DG135800
rosa_wichuraiana	Rw6G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	336
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	273
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	3 cut(s)	35, 121, 160
AluI	AGCT	3 cut(s)	35, 121, 160
Alw21I	GWGCWC	1 cut(s)	162
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	2 cut(s)	168, 232
ApeKI	GCWGC	1 cut(s)	35
AseI	ATTAAT	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	115, 263, 275
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	278
AxyI	CCTNAGG	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	275
BfmI	CTRYAG	2 cut(s)	36, 362
BfuAI	ACCTGC	1 cut(s)	289
BglI	GCCNNNNNGGC	1 cut(s)	99
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	29, 279
BmrFI	CCNGG	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	176, 227
BsaJI	CCNNGG	1 cut(s)	274
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	2 cut(s)	170, 234
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	147
BslFI	GGGAC	2 cut(s)	291, 339
BsmFI	GGGAC	2 cut(s)	291, 339
BsnI	GGCC	2 cut(s)	170, 234
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	151
BspANI	GGCC	2 cut(s)	170, 234
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	29, 279
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	23, 117
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	2 cut(s)	93, 251
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	2 cut(s)	36, 362
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	170, 234
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	278
CviAII	CATG	5 cut(s)	55, 75, 90, 163, 248
CviJI	RGCY	6 cut(s)	35, 121, 160, 170, 234, 314
CviKI_1	RGCY	6 cut(s)	35, 121, 160, 170, 234, 314
DdeI	CTNAG	2 cut(s)	23, 117
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	5 cut(s)	58, 78, 93, 166, 251
FaiI	YATR	9 cut(s)	56, 76, 91, 164, 188, 190, 249, 302, 364
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FaqI	GGGAC	2 cut(s)	291, 339
FatI	CATG	5 cut(s)	54, 74, 89, 162, 247
Fnu4HI	GCNGC	1 cut(s)	36
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	170, 234
Hin1II	CATG	5 cut(s)	58, 78, 93, 166, 251
HinfI	GANTC	3 cut(s)	4, 17, 66
HphI	GGTGA	3 cut(s)	115, 263, 275
Hpy188III	TCNNGA	3 cut(s)	25, 149, 155
HpyAV	CCTTC	2 cut(s)	236, 253
HpyCH4V	TGCA	3 cut(s)	38, 49, 89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	2 cut(s)	23, 117
Hsp92II	CATG	5 cut(s)	58, 78, 93, 166, 251
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	10, 107, 167, 260, 287, 294
Lsp1109I	GCAGC	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	329
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	3 cut(s)	294, 320, 339
MnlI	CCTC	5 cut(s)	32, 152, 160, 202, 247
MseI	TTAA	2 cut(s)	108, 330
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	5 cut(s)	58, 78, 93, 166, 251
NlaIV	GGNNCC	2 cut(s)	29, 279
NmeAIII	GCCGAG	1 cut(s)	210
NspI	RCATGY	2 cut(s)	93, 251
PaeI	GCATGC	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	147
PciI	ACATGT	1 cut(s)	247
PfeI	GAWTC	3 cut(s)	4, 17, 66
PkrI	GCNGC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	278
PscI	ACATGT	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	29, 279
PspPI	GGNCC	1 cut(s)	278
PspPPI	RGGWCCY	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	108, 330
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	7 cut(s)	12, 37, 123, 133, 162, 186, 283
SfcI	CTRYAG	2 cut(s)	36, 362
Sfr274I	CTCGAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	147
SmlI	CTYRAG	3 cut(s)	147, 155, 206
SmoI	CTYRAG	3 cut(s)	147, 155, 206
SphI	GCATGC	1 cut(s)	93
Sse9I	AATT	3 cut(s)	294, 320, 339
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	273
TaqI	TCGA	1 cut(s)	148
TasI	AATT	3 cut(s)	294, 320, 339
TfiI	GAWTC	3 cut(s)	4, 17, 66
Tru1I	TTAA	2 cut(s)	108, 330
Tru9I	TTAA	2 cut(s)	108, 330
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	3 cut(s)	17, 71, 336
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	108
XceI	RCATGY	2 cut(s)	93, 251
XhoI	CTCGAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.