Rw6G013070

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0018624
Physical Location & Seq
Reverse (-)
24062632 .. 24063524
893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G013070.1

Sequence Viewer

Length: 672 bp
ATGGAGACACAATTGCGATTTTTACTTACTTGCGTGAAGTTAGGGAGTCAAAAGCGTTACCAGACATGGTTTGCTAAGAAGTTTCTATGTGCACCAAACAGAGAGACTTTGGTAGTTGACATCATCCGTTGTATATGTTGTGCACACCATCCACCAAATGAAATCATACAATCGGATATCATTCCAAGATGGGCTGTTGTAGGTTGGCTATTGAAATATTGCACAAAGAATTATGTCCAAGCCAATGTGAAACTAGCTCTACTTTATGATTGGCTATTCTTTGATGAAAGAGTAGATAATATAATGAATATTGAGCCTGCCATGCTACTGATGGTGTACTCTATACCCAGATACATTGATGTGACTCACACACTTCTTGAGTTTTTGTTCCTTCTTGTGGACAGTTATGATGTAGAACATAAAGATATAATTATTAGAGGCGTGCCTTCATCTCTTCGTGTTTCCCAGGCACTGGCACTTCTGGGCGAATACATAGATAAAGAAGATCCATCTATCCGAATTGGTGCAATAATGGGTCTAGGGATTGCATATGCTGGTGATGAGAACGAGCAGGTACGTAGTAAGCTGACTCCTATACTAAATGACGCCAAAGCTCCCCTTGATGTTATCACATTCGCTGCAATCTCCTTGGGGTTGATATATGTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

223

Amino Acids

25.39

Weight (kDa)

5.82

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 1 - 154 9.8e-70 Integrator complex subunit 3 N-terminal
PC_rep PF01851 175 - 203 3.1e-06 Proteasome/cyclosome repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018624)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0267101
rosa_multiflora Rmu_sc0002938.1_g000048 Rmu_ssc0000388.1_g000014
rosa_roxburghii Rroxscaffold_3G00230360
rosa_samantha Rh4AG209500 Rh6BG151700 Rh6CG147200 Rh6CG147300 Rh6DG135800
rosa_wichuraiana Rw6G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 562
AccB7I CCANNNNNTGG 1 cut(s) 472
AclWI GGATC 1 cut(s) 500
AcyI GRCGYC 1 cut(s) 606
AfaI GTAC 2 cut(s) 338, 576
AfiI CCNNNNNNNGG 2 cut(s) 397, 472
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 465
AluBI AGCT 3 cut(s) 257, 586, 614
AluI AGCT 3 cut(s) 257, 586, 614
Alw21I GWGCWC 2 cut(s) 94, 145
Alw26I GTCTC 1 cut(s) 98
Alw44I GTGCAC 2 cut(s) 90, 141
AlwI GGATC 1 cut(s) 500
AlwNI CAGNNNCTG 1 cut(s) 472
ApaLI GTGCAC 2 cut(s) 90, 141
ApeKI GCWGC 1 cut(s) 638
AsuHPI GGTGA 1 cut(s) 569
BaeGI GKGCMC 2 cut(s) 94, 145
Bbv12I GWGCWC 2 cut(s) 94, 145
BbvI GCAGC 1 cut(s) 625
BccI CCATC 4 cut(s) 156, 183, 325, 517
BciT130I CCWGG 1 cut(s) 467
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 2 cut(s) 254, 539
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 1 cut(s) 639
BlsI GCNGC 1 cut(s) 640
Bme1390I CCNGG 1 cut(s) 467
BmrFI CCNGG 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 398
BsaAI YACGTR 1 cut(s) 578
BsaHI GRCGYC 1 cut(s) 606
BsaJI CCNNGG 2 cut(s) 465, 648
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 472
Bse1I ACTGG 1 cut(s) 477
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 2 cut(s) 465, 648
BseGI GGATG 2 cut(s) 123, 148
BseLI CCNNNNNNNGG 2 cut(s) 397, 472
BseNI ACTGG 1 cut(s) 477
BseSI GKGCMC 2 cut(s) 94, 145
BseXI GCAGC 1 cut(s) 625
BsiHKAI GWGCWC 2 cut(s) 94, 145
BslI CCNNNNNNNGG 2 cut(s) 397, 472
BsmAI GTCTC 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 94, 145
Bsp143I GATC 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 562
BspPI GGATC 1 cut(s) 500
BsrI ACTGG 1 cut(s) 477
BssECI CCNNGG 2 cut(s) 465, 648
BssMI GATC 1 cut(s) 505
BssNI GRCGYC 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 648
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 1 cut(s) 606
BstBAI YACGTR 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 318, 443
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 123, 148
BstKTI GATC 1 cut(s) 508
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 505
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNI CCWGG 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 465
BstSLI GKGCMC 2 cut(s) 94, 145
BstSNI TACGTA 1 cut(s) 578
BstV1I GCAGC 1 cut(s) 625
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BtsCI GGATG 2 cut(s) 123, 148
BtsIMutI CAGTG 1 cut(s) 470
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 2 cut(s) 318, 443
CaiI CAGNNNCTG 1 cut(s) 472
CseI GACGC 1 cut(s) 614
Csp6I GTAC 2 cut(s) 337, 575
CviAII CATG 2 cut(s) 66, 322
CviJI RGCY 8 cut(s) 194, 208, 242, 257, 274, 316, 586, 614
CviKI_1 RGCY 8 cut(s) 194, 208, 242, 257, 274, 316, 586, 614
CviQI GTAC 2 cut(s) 337, 575
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 507
DpnII GATC 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco105I TACGTA 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 648
Eco32I GATATC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 465
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 648
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 2 cut(s) 69, 325
FalI AAGNNNNNCTT 2 cut(s) 603, 635
FatI CATG 2 cut(s) 65, 321
FauNDI CATATG 1 cut(s) 550
Fnu4HI GCNGC 1 cut(s) 639
FokI GGATG 2 cut(s) 110, 135
Fsp4HI GCNGC 1 cut(s) 639
FspBI CTAG 2 cut(s) 254, 539
GluI GCNGC 1 cut(s) 639
HgaI GACGC 1 cut(s) 614
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 2 cut(s) 69, 325
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 3 cut(s) 46, 364, 589
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 5 cut(s) 92, 118, 143, 337, 400
Hpy188I TCNGA 2 cut(s) 175, 518
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 5 cut(s) 92, 118, 143, 337, 400
HpyAV CCTTC 2 cut(s) 401, 456
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 6 cut(s) 92, 143, 222, 527, 548, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 577
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 2 cut(s) 69, 325
Kzo9I GATC 1 cut(s) 505
LmnI GCTCC 1 cut(s) 619
LpnPI CCDG 9 cut(s) 74, 330, 361, 452, 458, 467, 479, 540, 557
Lsp1109I GCAGC 1 cut(s) 625
MaeI CTAG 2 cut(s) 254, 539
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 2 cut(s) 56, 361
MalI GATC 1 cut(s) 507
MboI GATC 1 cut(s) 505
MboII GAAGA 2 cut(s) 446, 515
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 2 cut(s) 94, 145
MluCI AATT 4 cut(s) 11, 229, 429, 519
MlyI GAGTC 3 cut(s) 55, 358, 583
MnlI CCTC 1 cut(s) 431
MslI CAYNNNNRTG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 467
MunI CAATTG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 467
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeI CATATG 1 cut(s) 550
NdeII GATC 1 cut(s) 505
NlaIII CATG 2 cut(s) 69, 325
NmuCI GTSAC 1 cut(s) 361
PflMI CCANNNNNTGG 1 cut(s) 472
PkrI GCNGC 1 cut(s) 640
PleI GAGTC 3 cut(s) 54, 358, 583
PpsI GAGTC 3 cut(s) 54, 358, 583
Ppu21I YACGTR 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PstNI CAGNNNCTG 1 cut(s) 472
PsuI RGATCY 1 cut(s) 505
RsaI GTAC 2 cut(s) 338, 576
RsaNI GTAC 2 cut(s) 337, 575
RseI CAYNNNNRTG 1 cut(s) 359
SatI GCNGC 1 cut(s) 639
Sau3AI GATC 1 cut(s) 505
SchI GAGTC 3 cut(s) 55, 358, 583
ScrFI CCNGG 1 cut(s) 467
SduI GDGCHC 2 cut(s) 94, 145
SetI ASST 6 cut(s) 205, 259, 576, 580, 588, 616
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SnaBI TACGTA 1 cut(s) 578
Sse9I AATT 4 cut(s) 11, 229, 429, 519
SspI AATATT 2 cut(s) 218, 310
SspMI CTAG 2 cut(s) 254, 539
StyD4I CCNGG 1 cut(s) 465
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 1 cut(s) 580
TasI AATT 4 cut(s) 11, 229, 429, 519
TatI WGTACW 1 cut(s) 336
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 1 cut(s) 638
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 4 cut(s) 174, 300, 320, 438
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 477
Van91I CCANNNNNTGG 1 cut(s) 472
VneI GTGCAC 2 cut(s) 90, 141
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XspI CTAG 2 cut(s) 254, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.