Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0018624

Physical Location & Seq

Genomic Coordinates Reverse (-)

19194825 .. 19195717

Gene Structure 893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG147300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGACACAATTGCGATTTTTACTTACTTGCGTGAAGTTAGGGAGTCAAAAGCGTTACCAGACATGGTTTGCTAAGAAGTTTCTATGTGCACCAAACAGAGAGACTTTGGTAGTTGACATCATCCGTTGTATATGTTGTGCACACCATCCACCAAATGAAATCATACAATCGGATATCATTCCAAGATGGGCTGTTGTAGGTTGGCTATTGAAATATTGCACAAAGAATTATGTCCAAGCCAATGTGAAACTAGCTCTACTTTATGATTGGCTATTCTTTGATGAAAGAGTAGATAATATAATGAATATTGAGCCTGCCATGCTACTGATGGTGTACTCTATACCCAGATACATTGATGTGACTCACACACTTCTTGAGTTTTTGTTCCTTCTTGTGGACAGTTATGATGTAGAACATAAAGATATAATTATTAGAGGCGTGCCTTCATCTCTTCGTGTTTCCCAGGCACTGGCACTTCTGGGCAAATACATAGATAAAGAAGATCCATCTATCCGAATTGGTGCAATAATGGGTCTAGGGATTGCATATGCTGGTGATGAGAACGAGCAGATACGTAGTAAGCTGACTCCTATACTAAATGACGCCAAAGCTCCCCTTGATGTTATCACATTCGCTGCAATCTCCTTGGGGTTGATATATGTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ints3

Protein Analysis

223

Amino Acids

25.41

Weight (kDa)

6.42

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ints3_N	PF10189	1 - 154	5.9e-70	Integrator complex subunit 3 N-terminal
PC_rep	PF01851	175 - 203	4.9e-06	Proteasome/cyclosome repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018624)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267101
rosa_multiflora	Rmu_sc0002938.1_g000048 Rmu_ssc0000388.1_g000014
rosa_roxburghii	Rroxscaffold_3G00230360
rosa_samantha	Rh4AG209500 Rh6BG151700 Rh6CG147200 Rh6CG147300 Rh6DG135800
rosa_wichuraiana	Rw6G013070

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	472
AclWI	GGATC	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	397, 472
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	3 cut(s)	257, 586, 614
AluI	AGCT	3 cut(s)	257, 586, 614
Alw21I	GWGCWC	2 cut(s)	94, 145
Alw26I	GTCTC	1 cut(s)	98
Alw44I	GTGCAC	2 cut(s)	90, 141
AlwI	GGATC	1 cut(s)	500
AlwNI	CAGNNNCTG	1 cut(s)	472
ApaLI	GTGCAC	2 cut(s)	90, 141
ApeKI	GCWGC	1 cut(s)	638
AsuHPI	GGTGA	1 cut(s)	569
BaeGI	GKGCMC	2 cut(s)	94, 145
Bbv12I	GWGCWC	2 cut(s)	94, 145
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	4 cut(s)	156, 183, 325, 517
BciT130I	CCWGG	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	254, 539
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
Bme1390I	CCNGG	1 cut(s)	467
BmrFI	CCNGG	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	398
BsaAI	YACGTR	1 cut(s)	578
BsaHI	GRCGYC	1 cut(s)	606
BsaJI	CCNNGG	2 cut(s)	465, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 472
Bse1I	ACTGG	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	465, 648
BseGI	GGATG	2 cut(s)	123, 148
BseLI	CCNNNNNNNGG	2 cut(s)	397, 472
BseNI	ACTGG	1 cut(s)	477
BseSI	GKGCMC	2 cut(s)	94, 145
BseXI	GCAGC	1 cut(s)	625
BsiHKAI	GWGCWC	2 cut(s)	94, 145
BslI	CCNNNNNNNGG	2 cut(s)	397, 472
BsmAI	GTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	94, 145
Bsp143I	GATC	1 cut(s)	505
BspPI	GGATC	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	465, 648
BssMI	GATC	1 cut(s)	505
BssNI	GRCGYC	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	1 cut(s)	459
BstACI	GRCGYC	1 cut(s)	606
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	318, 443
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	123, 148
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstSLI	GKGCMC	2 cut(s)	94, 145
BstSNI	TACGTA	1 cut(s)	578
BstV1I	GCAGC	1 cut(s)	625
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	123, 148
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	2 cut(s)	318, 443
CaiI	CAGNNNCTG	1 cut(s)	472
CseI	GACGC	1 cut(s)	614
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	2 cut(s)	66, 322
CviJI	RGCY	8 cut(s)	194, 208, 242, 257, 274, 316, 586, 614
CviKI_1	RGCY	8 cut(s)	194, 208, 242, 257, 274, 316, 586, 614
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco105I	TACGTA	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	648
Eco32I	GATATC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	465
EcoRV	GATATC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	2 cut(s)	69, 325
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FatI	CATG	2 cut(s)	65, 321
FauNDI	CATATG	1 cut(s)	550
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	2 cut(s)	110, 135
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	2 cut(s)	254, 539
GluI	GCNGC	1 cut(s)	639
HgaI	GACGC	1 cut(s)	614
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	69, 325
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	3 cut(s)	46, 364, 589
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	5 cut(s)	92, 118, 143, 337, 400
Hpy188I	TCNGA	2 cut(s)	175, 518
Hpy188III	TCNNGA	1 cut(s)	377
Hpy8I	GTNNAC	5 cut(s)	92, 118, 143, 337, 400
HpyAV	CCTTC	2 cut(s)	401, 456
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	577
HpyCH4V	TGCA	6 cut(s)	92, 143, 222, 527, 548, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	577
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	2 cut(s)	69, 325
Kzo9I	GATC	1 cut(s)	505
LmnI	GCTCC	1 cut(s)	619
LpnPI	CCDG	8 cut(s)	74, 330, 361, 452, 458, 467, 479, 540
Lsp1109I	GCAGC	1 cut(s)	625
MaeI	CTAG	2 cut(s)	254, 539
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	2 cut(s)	56, 361
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	2 cut(s)	446, 515
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	2 cut(s)	94, 145
MluCI	AATT	4 cut(s)	11, 229, 429, 519
MlyI	GAGTC	3 cut(s)	55, 358, 583
MnlI	CCTC	1 cut(s)	431
MslI	CAYNNNNRTG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	467
MunI	CAATTG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	2 cut(s)	69, 325
NmuCI	GTSAC	1 cut(s)	361
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	640
PleI	GAGTC	3 cut(s)	54, 358, 583
PpsI	GAGTC	3 cut(s)	54, 358, 583
Ppu21I	YACGTR	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	359
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	1 cut(s)	505
SchI	GAGTC	3 cut(s)	55, 358, 583
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	94, 145
SetI	ASST	5 cut(s)	205, 259, 580, 588, 616
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SnaBI	TACGTA	1 cut(s)	578
Sse9I	AATT	4 cut(s)	11, 229, 429, 519
SspI	AATATT	2 cut(s)	218, 310
SspMI	CTAG	2 cut(s)	254, 539
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	580
TasI	AATT	4 cut(s)	11, 229, 429, 519
TatI	WGTACW	1 cut(s)	336
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	4 cut(s)	174, 300, 320, 438
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	477
Van91I	CCANNNNNTGG	1 cut(s)	472
VneI	GTGCAC	2 cut(s)	90, 141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XspI	CTAG	2 cut(s)	254, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.