Rh6BG151700

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018624
Physical Location & Seq
Reverse (-)
24343356 .. 24344800
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG151700.1

Sequence Viewer

Length: 915 bp
ATGCTCTTTTCTTCATCGAACAATATGGGGTTCCTACAAGATGTGGTTCATATACCAAACTTTAGAGCTACATGGAAAGATCTGGTATTGAATCAAGGCAAGTTTAAGACTCCTGGTTTTTCTGTTATTTTGCAGCTCTATAACACAAGGACTTCAAGTCAGTATATTTTACTTCGGATTTCACCAGAAATGGAGACACAGTTGCGATTTTTACTTACTTGCGTGAAGTTAGGGAGTCAAAAGCGTTACCAGGCATGGTTTGCTAAGAAGTTTCTATGTGCACCAAACAGAGAGACTTTGATAGTTGACATTATCCGTTGTATATGTTGTGCACACCATCCACCAAATGAAATCATACAATCGGATATCATTCCAAGATGGGCTGTTGTAGGTTGGCTATTGAAATATTGCACAAAGAATTATGTCCAAGCCAATGTGAAACTAGCTCTACTTTATGATTGGCTATTCTTTGATGAAAGAGTAGATAATATAATGAATATTGAGCCTGCAATGCTACTGATGGTGTACTCTATACCCAGATACATTGATGTGACTCATAGACTTCTTGAGTTTTTGTTCCTTCTTGTGGACAGTTATGATGTGGAACATAAAGATATAATTATTAGAGGCGTGCCTTCATCTCTTCGTGTTTCCCAGGCACTGGCACTTCTGGGCGAATACATAGATAAAGAAGATCCATCTATCCGAATTGGTGCAATAATGGGTCTAGGGATTGCATATGTTGGTGCTGAGAATGAGCAGATACGTAGTAAGCTGACTCCTATACTAAATGACACCAAAGCTCCCCTTGATGTTATCACATTCGCTGCAATCTCCTTGGGGTTGATATATGTTGGTAAGTTGGTTCTTGCAATGAGGAGGTCTTCTGTATCTTGGGAAGTAGGAAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

304

Amino Acids

34.74

Weight (kDa)

8.75

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 11 - 217 1.1e-86 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018624)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0267101
rosa_multiflora Rmu_sc0002938.1_g000048 Rmu_ssc0000388.1_g000014
rosa_roxburghii Rroxscaffold_3G00230360
rosa_samantha Rh4AG209500 Rh6BG151700 Rh6CG147200 Rh6CG147300 Rh6DG135800
rosa_wichuraiana Rw6G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 661
AclWI GGATC 1 cut(s) 689
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 2 cut(s) 586, 661
AgsI TTSAA 3 cut(s) 91, 156, 403
AhdI GACNNNNNGTC 1 cut(s) 156
AjnI CCWGG 3 cut(s) 112, 249, 654
AluBI AGCT 5 cut(s) 68, 136, 446, 775, 803
AluI AGCT 5 cut(s) 68, 136, 446, 775, 803
Alw21I GWGCWC 2 cut(s) 283, 334
Alw26I GTCTC 2 cut(s) 188, 287
Alw44I GTGCAC 2 cut(s) 279, 330
AlwI GGATC 1 cut(s) 689
AlwNI CAGNNNCTG 1 cut(s) 661
ApaLI GTGCAC 2 cut(s) 279, 330
ApeKI GCWGC 2 cut(s) 133, 827
AsuHPI GGTGA 1 cut(s) 174
BaeGI GKGCMC 2 cut(s) 283, 334
BbsI GAAGAC 1 cut(s) 876
Bbv12I GWGCWC 2 cut(s) 283, 334
BbvI GCAGC 2 cut(s) 145, 814
BccI CCATC 4 cut(s) 345, 372, 514, 706
BciT130I CCWGG 3 cut(s) 114, 251, 656
BcoDI GTCTC 2 cut(s) 188, 287
BfaI CTAG 2 cut(s) 443, 728
BglII AGATCT 1 cut(s) 79
BisI GCNGC 2 cut(s) 134, 828
BlsI GCNGC 2 cut(s) 135, 829
Bme1390I CCNGG 3 cut(s) 114, 251, 656
BmeRI GACNNNNNGTC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 3 cut(s) 114, 251, 656
BpiI GAAGAC 1 cut(s) 876
BpuEI CTTGAG 1 cut(s) 587
BsaAI YACGTR 1 cut(s) 767
BsaJI CCNNGG 2 cut(s) 654, 837
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 787, 817
Bsc4I CCNNNNNNNGG 2 cut(s) 586, 661
Bse1I ACTGG 1 cut(s) 666
Bse3DI GCAATG 2 cut(s) 516, 879
BseBI CCWGG 3 cut(s) 114, 251, 656
BseDI CCNNGG 2 cut(s) 654, 837
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 2 cut(s) 586, 661
BseMI GCAATG 2 cut(s) 516, 879
BseMII CTCAG 1 cut(s) 741
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 1 cut(s) 892
BseSI GKGCMC 2 cut(s) 283, 334
BseXI GCAGC 2 cut(s) 145, 814
BsiHKAI GWGCWC 2 cut(s) 283, 334
BslI CCNNNNNNNGG 2 cut(s) 586, 661
BsmAI GTCTC 2 cut(s) 188, 287
Bsp1286I GDGCHC 2 cut(s) 283, 334
Bsp143I GATC 2 cut(s) 79, 694
BspCNI CTCAG 1 cut(s) 742
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 1 cut(s) 689
BsrDI GCAATG 2 cut(s) 516, 879
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 2 cut(s) 654, 837
BssMI GATC 2 cut(s) 79, 694
BssT1I CCWWGG 1 cut(s) 837
Bst2UI CCWGG 3 cut(s) 114, 251, 656
Bst4CI ACNGT 2 cut(s) 201, 593
Bst6I CTCTTC 1 cut(s) 648
BstAPI GCANNNNNTGC 1 cut(s) 260
BstBAI YACGTR 1 cut(s) 767
BstC8I GCNNGC 2 cut(s) 507, 632
BstDEI CTNAG 2 cut(s) 264, 750
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 2 cut(s) 82, 697
BstMAI GTCTC 2 cut(s) 188, 287
BstMBI GATC 2 cut(s) 79, 694
BstMWI GCNNNNNNNGC 2 cut(s) 260, 511
BstNI CCWGG 3 cut(s) 114, 251, 656
BstSCI CCNGG 3 cut(s) 112, 249, 654
BstSLI GKGCMC 2 cut(s) 283, 334
BstSNI TACGTA 1 cut(s) 767
BstV1I GCAGC 2 cut(s) 145, 814
BstV2I GAAGAC 1 cut(s) 876
BstX2I RGATCY 2 cut(s) 79, 694
BstYI RGATCY 2 cut(s) 79, 694
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 659
Cac8I GCNNGC 2 cut(s) 507, 632
CaiI CAGNNNCTG 1 cut(s) 661
Csp6I GTAC 1 cut(s) 526
CviAII CATG 2 cut(s) 72, 255
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 2 cut(s) 264, 750
DpnI GATC 2 cut(s) 81, 696
DpnII GATC 2 cut(s) 79, 694
DriI GACNNNNNGTC 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 648
Eam1105I GACNNNNNGTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 648
Eco105I TACGTA 1 cut(s) 767
Eco130I CCWWGG 1 cut(s) 837
Eco32I GATATC 1 cut(s) 367
EcoRII CCWGG 3 cut(s) 112, 249, 654
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 837
FaeI CATG 2 cut(s) 75, 258
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FatI CATG 2 cut(s) 71, 254
FauNDI CATATG 1 cut(s) 739
Fnu4HI GCNGC 2 cut(s) 134, 828
FokI GGATG 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 134, 828
FspBI CTAG 2 cut(s) 443, 728
GluI GCNGC 2 cut(s) 134, 828
Hin1II CATG 2 cut(s) 75, 258
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 5 cut(s) 91, 109, 235, 553, 778
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 5 cut(s) 281, 307, 332, 526, 589
Hpy188I TCNGA 3 cut(s) 177, 364, 707
Hpy188III TCNNGA 1 cut(s) 566
Hpy8I GTNNAC 5 cut(s) 281, 307, 332, 526, 589
HpyAV CCTTC 2 cut(s) 590, 645
HpyCH4III ACNGT 2 cut(s) 201, 593
HpyCH4IV ACGT 1 cut(s) 766
HpyCH4V TGCA 9 cut(s) 133, 281, 332, 411, 509, 716, 737, 830, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 511
HpyF3I CTNAG 2 cut(s) 264, 750
HpySE526I ACGT 1 cut(s) 766
Hsp92II CATG 2 cut(s) 75, 258
Kzo9I GATC 2 cut(s) 79, 694
LmnI GCTCC 1 cut(s) 808
Lsp1109I GCAGC 2 cut(s) 145, 814
MaeI CTAG 2 cut(s) 443, 728
MaeII ACGT 1 cut(s) 766
MaeIII GTNAC 2 cut(s) 245, 550
MalI GATC 2 cut(s) 81, 696
MboI GATC 2 cut(s) 79, 694
MboII GAAGA 4 cut(s) 3, 635, 704, 876
MflI RGATCY 2 cut(s) 79, 694
MhlI GDGCHC 2 cut(s) 283, 334
MluCI AATT 3 cut(s) 418, 618, 708
MlyI GAGTC 4 cut(s) 103, 244, 547, 772
MnlI CCTC 3 cut(s) 620, 870, 873
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 548
MspR9I CCNGG 3 cut(s) 114, 251, 656
MvaI CCWGG 3 cut(s) 114, 251, 656
MwoI GCNNNNNNNGC 2 cut(s) 260, 511
NdeI CATATG 1 cut(s) 739
NdeII GATC 2 cut(s) 79, 694
NlaIII CATG 2 cut(s) 75, 258
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 550
PfeI GAWTC 1 cut(s) 91
PflMI CCANNNNNTGG 1 cut(s) 661
PkrI GCNGC 2 cut(s) 135, 829
PleI GAGTC 4 cut(s) 103, 243, 547, 772
PpsI GAGTC 4 cut(s) 103, 243, 547, 772
Ppu21I YACGTR 1 cut(s) 767
Psp6I CCWGG 3 cut(s) 112, 249, 654
PspGI CCWGG 3 cut(s) 112, 249, 654
PspN4I GGNNCC 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 661
PsuI RGATCY 2 cut(s) 79, 694
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 2 cut(s) 134, 828
Sau3AI GATC 2 cut(s) 79, 694
SchI GAGTC 4 cut(s) 103, 244, 547, 772
ScrFI CCNGG 3 cut(s) 114, 251, 656
SduI GDGCHC 2 cut(s) 283, 334
SetI ASST 8 cut(s) 70, 138, 394, 448, 769, 777, 805, 884
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
SnaBI TACGTA 1 cut(s) 767
Sse9I AATT 3 cut(s) 418, 618, 708
SspI AATATT 2 cut(s) 407, 499
SspMI CTAG 2 cut(s) 443, 728
StyD4I CCNGG 3 cut(s) 112, 249, 654
StyI CCWWGG 1 cut(s) 837
TaaI ACNGT 2 cut(s) 201, 593
TaiI ACGT 1 cut(s) 769
TaqI TCGA 1 cut(s) 17
TasI AATT 3 cut(s) 418, 618, 708
TatI WGTACW 1 cut(s) 525
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 2 cut(s) 133, 827
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 5 cut(s) 38, 363, 489, 509, 627
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 1 cut(s) 666
Van91I CCANNNNNTGG 1 cut(s) 661
VneI GTGCAC 2 cut(s) 279, 330
XspI CTAG 2 cut(s) 443, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.