Rh6DG135800

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018624
Physical Location & Seq
Reverse (-)
19397068 .. 19399440
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG135800.1

Sequence Viewer

Length: 1071 bp
ATGGGGTTCCTACAAGATGTGGTTCATATACCAAACTTTAGAGCTACATGGAAAGATCTGGTATTGAATCAAGGCAAGTTTAAGACTCCTGGTTTTTCTGTTATTTTGCAGCTCTATAACACAAGGACTTCAAGTCAGTATATTTTACTTCGGATTTCACCAGAAATGGAGACACAGTTGCGATTTTTACTTACTTGCGTGAAGTTAGGGAGTCAAAAGCGTTACCAGGCATGGTTTGCTAAGAAGTTTCTATGTGCACCAAACAGAGAGACTTTGATAGTTGACATTATCCGTTGTATATGTTGTGCACACCATCCACCAAATGAAATCATACAATCGGATATCATTCCAAGATGGGCTGTTGTAGGTTGGCTATTGAAATATTGCACAAAGAATTATGTCCAAGCCAATGTGAAACTAGCTCTACTTTATGATTGGCTATTCTTTGATGAAAGAGTAGATAATATAATGAATATTGAGCCTGCAATGCTACTGATGGTGTACTCTATACCCAGATACATTGATGTGACTCATAGACTTCTTGAGTTTTTGTTCCTTCTTGTGGACAGTTATGATGTGGAACATAAAGATATAATTATTAGAGGCGTGCCTTCATCTCTTCGTGTTTCCCAGGCACTGGCACTTCTGGGCGAATACATAGATAAAGAAGATCCATCTATCCGAATTGGTGCAATAATGGGTCTAGGGATTGCATATGTTGGTGCTGAGAATGAGCAGGAAAGTGTTGAGGCCACTGCTGAAGTTTCAAAGACATTTCATGAAAAAATCAGAAAACATTGTGATATGACTCTGCTTTCTTGTGCTTATGCGGGAACAGGAAATGTTCTCAAGGTTCAAAACCTTCTTGGCCATTGTTCACAACATCTTGAGAAGGGTGAAACACACCAGGGGCCTGCAGTGCTTGGTATTGCGATGATAGCAATGGCTGAAGAGTTGGGACTTGAAATGGCAATTCGTTCATTGGAGAATCTTCTACAGTATGGAGAACAAAATATCCGTCGGGCAGTTCCTTTGGCTCTTGGTCTCCTTTGCATATCAAATCCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

356

Amino Acids

40.36

Weight (kDa)

6.79

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 3 - 209 1.7e-86 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018624)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0267101
rosa_multiflora Rmu_sc0002938.1_g000048 Rmu_ssc0000388.1_g000014
rosa_roxburghii Rroxscaffold_3G00230360
rosa_samantha Rh4AG209500 Rh6BG151700 Rh6CG147200 Rh6CG147300 Rh6DG135800
rosa_wichuraiana Rw6G013070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 637
AciI CCGC 1 cut(s) 830
AclWI GGATC 1 cut(s) 665
AcoI YGGCCR 1 cut(s) 868
AcuI CTGAAG 2 cut(s) 780, 969
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 2 cut(s) 562, 637
AgsI TTSAA 6 cut(s) 67, 132, 379, 768, 857, 965
AhdI GACNNNNNGTC 1 cut(s) 132
AjnI CCWGG 4 cut(s) 88, 225, 630, 906
AloI GAACNNNNNNTCC 2 cut(s) 999, 1031
AluBI AGCT 3 cut(s) 44, 112, 422
AluI AGCT 3 cut(s) 44, 112, 422
Alw21I GWGCWC 2 cut(s) 259, 310
Alw26I GTCTC 3 cut(s) 164, 263, 1049
Alw44I GTGCAC 2 cut(s) 255, 306
AlwI GGATC 1 cut(s) 665
AlwNI CAGNNNCTG 1 cut(s) 637
AoxI GGCC 3 cut(s) 750, 868, 911
ApaLI GTGCAC 2 cut(s) 255, 306
ApeKI GCWGC 1 cut(s) 109
ArsI GACNNNNNNTTYG 2 cut(s) 1003, 1035
AspS9I GGNCC 1 cut(s) 911
AsuHPI GGTGA 2 cut(s) 150, 908
BaeGI GKGCMC 2 cut(s) 259, 310
BalI TGGCCA 1 cut(s) 870
Bbv12I GWGCWC 2 cut(s) 259, 310
BbvI GCAGC 1 cut(s) 121
BccI CCATC 4 cut(s) 321, 348, 490, 682
BciT130I CCWGG 4 cut(s) 90, 227, 632, 908
BcoDI GTCTC 3 cut(s) 164, 263, 1049
BfaI CTAG 2 cut(s) 419, 704
BfmI CTRYAG 2 cut(s) 915, 995
BglII AGATCT 1 cut(s) 55
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 4 cut(s) 90, 227, 632, 908
BmeRI GACNNNNNGTC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 911
BmiI GGNNCC 2 cut(s) 8, 912
BmrFI CCNGG 4 cut(s) 90, 227, 632, 908
BpuEI CTTGAG 3 cut(s) 563, 833, 908
BsaI GGTCTC 1 cut(s) 1049
BsaJI CCNNGG 2 cut(s) 630, 907
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 562, 637
Bse1I ACTGG 1 cut(s) 642
Bse3DI GCAATG 2 cut(s) 492, 948
BseBI CCWGG 4 cut(s) 90, 227, 632, 908
BseDI CCNNGG 2 cut(s) 630, 907
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 2 cut(s) 562, 637
BseMI GCAATG 2 cut(s) 492, 948
BseMII CTCAG 1 cut(s) 717
BseNI ACTGG 1 cut(s) 642
BseSI GKGCMC 2 cut(s) 259, 310
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 3 cut(s) 752, 870, 913
BsiHKAI GWGCWC 2 cut(s) 259, 310
BslFI GGGAC 1 cut(s) 972
BslI CCNNNNNNNGG 2 cut(s) 562, 637
BsmAI GTCTC 3 cut(s) 164, 263, 1049
BsmFI GGGAC 1 cut(s) 972
BsnI GGCC 3 cut(s) 752, 870, 913
Bso31I GGTCTC 1 cut(s) 1049
Bsp1286I GDGCHC 2 cut(s) 259, 310
Bsp143I GATC 2 cut(s) 55, 670
BspACI CCGC 1 cut(s) 830
BspANI GGCC 3 cut(s) 752, 870, 913
BspCNI CTCAG 1 cut(s) 718
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 2 cut(s) 8, 912
BspMAI CTGCAG 1 cut(s) 919
BspPI GGATC 1 cut(s) 665
BspTNI GGTCTC 1 cut(s) 1049
BsrDI GCAATG 2 cut(s) 492, 948
BsrI ACTGG 1 cut(s) 642
BssECI CCNNGG 2 cut(s) 630, 907
BssMI GATC 2 cut(s) 55, 670
Bst2UI CCWGG 4 cut(s) 90, 227, 632, 908
Bst4CI ACNGT 3 cut(s) 177, 569, 999
Bst6I CTCTTC 2 cut(s) 624, 945
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 3 cut(s) 483, 608, 915
BstDEI CTNAG 2 cut(s) 240, 726
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 2 cut(s) 58, 673
BstMAI GTCTC 3 cut(s) 164, 263, 1049
BstMBI GATC 2 cut(s) 55, 670
BstMWI GCNNNNNNNGC 4 cut(s) 236, 487, 919, 938
BstNI CCWGG 4 cut(s) 90, 227, 632, 908
BstSCI CCNGG 4 cut(s) 88, 225, 630, 906
BstSFI CTRYAG 2 cut(s) 915, 995
BstSLI GKGCMC 2 cut(s) 259, 310
BstV1I GCAGC 1 cut(s) 121
BstX2I RGATCY 2 cut(s) 55, 670
BstYI RGATCY 2 cut(s) 55, 670
BsuRI GGCC 3 cut(s) 752, 870, 913
BtgZI GCGATG 1 cut(s) 947
BtsCI GGATG 1 cut(s) 313
BtsI GCAGTG 2 cut(s) 753, 924
BtsIMutI CAGTG 3 cut(s) 635, 753, 924
Cac8I GCNNGC 3 cut(s) 483, 608, 915
CaiI CAGNNNCTG 1 cut(s) 637
CciI TCATGA 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 911
Csp6I GTAC 1 cut(s) 502
CviAII CATG 3 cut(s) 48, 231, 779
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 2 cut(s) 240, 726
DpnI GATC 2 cut(s) 57, 672
DpnII GATC 2 cut(s) 55, 670
DriI GACNNNNNGTC 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 868
Eam1104I CTCTTC 2 cut(s) 624, 945
Eam1105I GACNNNNNGTC 1 cut(s) 132
EarI CTCTTC 2 cut(s) 624, 945
Eco31I GGTCTC 1 cut(s) 1049
Eco32I GATATC 1 cut(s) 343
Eco57I CTGAAG 2 cut(s) 780, 969
EcoO109I RGGNCCY 1 cut(s) 911
EcoRII CCWGG 4 cut(s) 88, 225, 630, 906
EcoRV GATATC 1 cut(s) 343
FaeI CATG 3 cut(s) 51, 234, 782
FaqI GGGAC 1 cut(s) 972
FatI CATG 3 cut(s) 47, 230, 778
FauI CCCGC 1 cut(s) 823
FauNDI CATATG 1 cut(s) 715
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 2 cut(s) 419, 704
GluI GCNGC 1 cut(s) 110
HaeIII GGCC 3 cut(s) 752, 870, 913
Hin1II CATG 3 cut(s) 51, 234, 782
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 6 cut(s) 67, 85, 211, 529, 808, 988
HphI GGTGA 2 cut(s) 150, 908
Hpy166II GTNNAC 6 cut(s) 257, 283, 308, 502, 565, 878
Hpy188I TCNGA 4 cut(s) 153, 340, 683, 791
Hpy188III TCNNGA 3 cut(s) 542, 779, 887
Hpy8I GTNNAC 6 cut(s) 257, 283, 308, 502, 565, 878
Hpy99I CGWCG 1 cut(s) 1023
HpyAV CCTTC 4 cut(s) 566, 621, 872, 886
HpyCH4III ACNGT 3 cut(s) 177, 569, 999
HpyCH4V TGCA 9 cut(s) 109, 257, 308, 387, 485, 692, 713, 917, 1053
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 487, 919, 938
HpyF3I CTNAG 2 cut(s) 240, 726
Hsp92II CATG 3 cut(s) 51, 234, 782
Kzo9I GATC 2 cut(s) 55, 670
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 2 cut(s) 419, 704
MaeIII GTNAC 2 cut(s) 221, 526
MalI GATC 2 cut(s) 57, 672
MboI GATC 2 cut(s) 55, 670
MboII GAAGA 4 cut(s) 611, 680, 962, 983
MflI RGATCY 2 cut(s) 55, 670
MhlI GDGCHC 2 cut(s) 259, 310
MlsI TGGCCA 1 cut(s) 870
MluCI AATT 4 cut(s) 394, 594, 684, 972
MluNI TGGCCA 1 cut(s) 870
MlyI GAGTC 4 cut(s) 79, 220, 523, 802
MnlI CCTC 2 cut(s) 596, 742
Mox20I TGGCCA 1 cut(s) 870
MscI TGGCCA 1 cut(s) 870
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 870
MspR9I CCNGG 4 cut(s) 90, 227, 632, 908
MvaI CCWGG 4 cut(s) 90, 227, 632, 908
MwoI GCNNNNNNNGC 4 cut(s) 236, 487, 919, 938
NdeI CATATG 1 cut(s) 715
NdeII GATC 2 cut(s) 55, 670
NlaIII CATG 3 cut(s) 51, 234, 782
NlaIV GGNNCC 2 cut(s) 8, 912
NmuCI GTSAC 1 cut(s) 526
PagI TCATGA 1 cut(s) 778
PfeI GAWTC 2 cut(s) 67, 988
PflMI CCANNNNNTGG 1 cut(s) 637
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 4 cut(s) 79, 219, 523, 802
PpsI GAGTC 4 cut(s) 79, 219, 523, 802
Psp6I CCWGG 4 cut(s) 88, 225, 630, 906
PspGI CCWGG 4 cut(s) 88, 225, 630, 906
PspN4I GGNNCC 2 cut(s) 8, 912
PspPI GGNCC 1 cut(s) 911
PstI CTGCAG 1 cut(s) 919
PstNI CAGNNNCTG 1 cut(s) 637
PsuI RGATCY 2 cut(s) 55, 670
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 2 cut(s) 55, 670
Sau96I GGNCC 1 cut(s) 911
SchI GAGTC 4 cut(s) 79, 220, 523, 802
ScrFI CCNGG 4 cut(s) 90, 227, 632, 908
SduI GDGCHC 2 cut(s) 259, 310
SetI ASST 6 cut(s) 46, 114, 370, 424, 855, 864
SfcI CTRYAG 2 cut(s) 915, 995
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 3 cut(s) 542, 848, 887
SmoI CTYRAG 3 cut(s) 542, 848, 887
Sse9I AATT 4 cut(s) 394, 594, 684, 972
SsiI CCGC 1 cut(s) 830
SspI AATATT 2 cut(s) 383, 475
SspMI CTAG 2 cut(s) 419, 704
StyD4I CCNGG 4 cut(s) 88, 225, 630, 906
TaaI ACNGT 3 cut(s) 177, 569, 999
TasI AATT 4 cut(s) 394, 594, 684, 972
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 2 cut(s) 67, 988
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 3 cut(s) 642, 760, 924
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 8 cut(s) 14, 339, 465, 485, 603, 767, 795, 969
TspGWI ACGGA 2 cut(s) 281, 1007
TspRI CASTG 3 cut(s) 642, 760, 924
Van91I CCANNNNNTGG 1 cut(s) 637
VneI GTGCAC 2 cut(s) 255, 306
XspI CTAG 2 cut(s) 419, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.