Rmu_sc0002962.1_g000021

Acetyltransferase (GNAT) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002962.1
OG0012375
Physical Location & Seq
Reverse (-)
94293 .. 96407
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1245 bp
atggaaaagaaaacgggtaagacgagctcaagctatgtgttgaaaacacgttggaatgaagttgccgataaaaacaatctcaaggaaaaagacgtagtacaagtttggtcattccgggatgtgggaaacaaccttcactttgctattgttttggttaagaagggtgagagaaagggtggtgaacatagtagtagtcgagggtatagccagccgccttcgctatcaacaacaccgcgtgatattgttgatggtgaaagaagaagtggtagtggtcaaggaacagaatcaaaggaagaagggatgataggagttaatagcaatgttgagagtaataaccacaagttatggccactagtgcccacatcctatctctccatctacaacatgtttcagtcattcaagaaacaaagaacacaaaatgtaaatatggccaatttgctagcaagctatcccaacatatcagaactctcatatggattaattacagtttctagaccagctaggaggactagattgatcaatggtgagggacatattgggtatgtagagattaagaccacaaattgtgtagtgcattgctccagtagtagtagtggtagctcaagtagtagtacctcatcaacggaggaagtgggttttgtagggagtggaaagtttggtattgatagtaagggagagttcaagtacttggtgagtgagtatggatggaaggtcaggagtttgtttagaaatggagatgaggtaaggaaggcagctcaagttcaagctgaagcatttcatgaacctgtgtttctcttcaatgatctgttcttccaattcttccaggctgaagtgttatctgggcttgtatataaacttaggaactcacccccaaacaggtatgcttgtttagttgctgagcctacgcccatggacacttccgagtcacaagaactcgtgggcgtcgtggatctcacggcttcaagagaccagaatgtactagagcatctcccacctgatgcagatgagtttctttatgtgtccggcatagctgttctcaagagttttaggaggaagaaagtagccactgttttactaaaagcttgtgacatgctctcagctgaatggggatttcagtatcttgctctccgggcttatgaagacgattttggtgcccgggagttgtatgcaaatgccggttaccgggttgtctccagtgatccgccgtgggggggggggggggggggtgtgtgtctaaagttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

414

Amino Acids

45.85

Weight (kDa)

8.41

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 306 - 394 5.1e-08 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1151
AccII CGCG 1 cut(s) 235
AciI CCGC 3 cut(s) 212, 233, 1202
AclWI GGATC 2 cut(s) 957, 1193
AcoI YGGCCR 2 cut(s) 347, 429
AcuI CTGAAG 2 cut(s) 789, 849
AcyI GRCGYC 1 cut(s) 942
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 4 cut(s) 99, 613, 686, 978
AfiI CCNNNNNNNGG 5 cut(s) 121, 876, 1182, 1208, 1211
AflIII ACRYGT 2 cut(s) 47, 384
AgsI TTSAA 6 cut(s) 43, 400, 682, 764, 799, 963
AhlI ACTAGT 1 cut(s) 352
AjnI CCWGG 1 cut(s) 822
AjuI GAANNNNNNNTTGG 2 cut(s) 1131, 1163
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 960, 1195
AlwI GGATC 2 cut(s) 957, 1193
Ama87I CYCGRG 1 cut(s) 1155
AoxI GGCC 2 cut(s) 347, 429
ApeKI GCWGC 1 cut(s) 752
AseI ATTAAT 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 774
AsuC2I CCSGG 5 cut(s) 116, 1130, 1156, 1157, 1184
AsuHPI GGTGA 6 cut(s) 176, 191, 263, 536, 703, 858
AsuNHI GCTAGC 1 cut(s) 439
AvaI CYCGRG 1 cut(s) 1155
BaeGI GKGCMC 2 cut(s) 360, 1156
BalI TGGCCA 2 cut(s) 349, 431
BanI GGYRCC 1 cut(s) 1151
BanII GRGCYC 1 cut(s) 29
BauI CACGAG 1 cut(s) 935
BbsI GAAGAC 1 cut(s) 1146
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 764
BccI CCATC 3 cut(s) 242, 383, 699
BceAI ACGGC 2 cut(s) 972, 1189
BcgI CGANNNNNNTGC 2 cut(s) 1133, 1167
BciT130I CCWGG 1 cut(s) 824
BclI TGATCA 1 cut(s) 516
BcnI CCSGG 5 cut(s) 116, 1130, 1156, 1157, 1184
BcoDI GTCTC 2 cut(s) 960, 1195
BcuI ACTAGT 1 cut(s) 352
BfaI CTAG 6 cut(s) 353, 440, 492, 501, 510, 980
BisI GCNGC 2 cut(s) 212, 753
BlpI GCTNAGC 1 cut(s) 897
BlsI GCNGC 2 cut(s) 213, 754
BmcAI AGTACT 1 cut(s) 686
Bme1390I CCNGG 6 cut(s) 116, 824, 1130, 1156, 1157, 1184
BmeT110I CYCGRG 1 cut(s) 1155
BmiI GGNNCC 1 cut(s) 1153
BmrFI CCNGG 6 cut(s) 116, 824, 1130, 1156, 1157, 1184
BmsI GCATC 2 cut(s) 988, 994
BmtI GCTAGC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 1146
BpmI CTGGAG 2 cut(s) 565, 1177
Bpu1102I GCTNAGC 1 cut(s) 897
BpuEI CTTGAG 5 cut(s) 13, 65, 586, 741, 1022
BpuMI CCSGG 5 cut(s) 116, 1130, 1156, 1157, 1184
BsaHI GRCGYC 1 cut(s) 942
BsaI GGTCTC 1 cut(s) 960
BsaJI CCNNGG 3 cut(s) 909, 1155, 1205
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 876, 1182, 1208, 1211
Bse118I RCCGGY 1 cut(s) 1175
Bse1I ACTGG 2 cut(s) 582, 1194
Bse3DI GCAATG 2 cut(s) 325, 574
BseBI CCWGG 1 cut(s) 824
BseDI CCNNGG 3 cut(s) 909, 1155, 1205
BseGI GGATG 4 cut(s) 124, 306, 362, 710
BseLI CCNNNNNNNGG 5 cut(s) 121, 876, 1182, 1208, 1211
BseMI GCAATG 2 cut(s) 325, 574
BseMII CTCAG 2 cut(s) 888, 1110
BseNI ACTGG 2 cut(s) 582, 1194
BseSI GKGCMC 2 cut(s) 360, 1156
BseXI GCAGC 1 cut(s) 764
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 2 cut(s) 349, 431
BshNI GGYRCC 1 cut(s) 1151
BsiHKAI GWGCWC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 1155
BsiSI CCGG 6 cut(s) 115, 1023, 1129, 1156, 1176, 1183
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 5 cut(s) 121, 876, 1182, 1208, 1211
BsmAI GTCTC 2 cut(s) 960, 1195
BsmFI GGGAC 1 cut(s) 543
BsnI GGCC 2 cut(s) 349, 431
Bso31I GGTCTC 1 cut(s) 960
BsoBI CYCGRG 1 cut(s) 1155
Bsp1286I GDGCHC 3 cut(s) 29, 360, 1156
Bsp143I GATC 4 cut(s) 516, 802, 949, 1198
Bsp1720I GCTNAGC 1 cut(s) 897
Bsp19I CCATGG 1 cut(s) 909
BspACI CCGC 3 cut(s) 212, 233, 1202
BspANI GGCC 2 cut(s) 349, 431
BspCNI CTCAG 2 cut(s) 889, 1109
BspFNI CGCG 1 cut(s) 235
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 1 cut(s) 1153
BspOI GCTAGC 1 cut(s) 443
BspPI GGATC 2 cut(s) 957, 1193
BspT107I GGYRCC 1 cut(s) 1151
BspTNI GGTCTC 1 cut(s) 960
BsrDI GCAATG 2 cut(s) 325, 574
BsrFI RCCGGY 1 cut(s) 1175
BsrI ACTGG 2 cut(s) 582, 1194
BssAI RCCGGY 1 cut(s) 1175
BssECI CCNNGG 3 cut(s) 909, 1155, 1205
BssMI GATC 4 cut(s) 516, 802, 949, 1198
BssNI GRCGYC 1 cut(s) 942
BssSI CACGAG 1 cut(s) 935
BssT1I CCWWGG 1 cut(s) 909
Bst2BI CACGAG 1 cut(s) 935
Bst2UI CCWGG 1 cut(s) 824
Bst4CI ACNGT 2 cut(s) 487, 1069
Bst6I CTCTTC 1 cut(s) 800
BstACI GRCGYC 1 cut(s) 942
BstC8I GCNNGC 3 cut(s) 209, 441, 445
BstDEI CTNAG 3 cut(s) 857, 897, 1096
BstDSI CCRYGG 2 cut(s) 909, 1205
BstEII GGTNACC 1 cut(s) 1178
BstF5I GGATG 4 cut(s) 124, 306, 362, 710
BstFNI CGCG 1 cut(s) 235
BstKTI GATC 4 cut(s) 519, 805, 952, 1201
BstMAI GTCTC 2 cut(s) 960, 1195
BstMBI GATC 4 cut(s) 516, 802, 949, 1198
BstMWI GCNNNNNNNGC 3 cut(s) 217, 355, 1130
BstNI CCWGG 1 cut(s) 824
BstNSI RCATGY 2 cut(s) 388, 1093
BstPI GGTNACC 1 cut(s) 1178
BstSCI CCNGG 6 cut(s) 114, 822, 1128, 1154, 1155, 1182
BstSLI GKGCMC 2 cut(s) 360, 1156
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 764
BstV2I GAAGAC 1 cut(s) 1146
BstX2I RGATCY 1 cut(s) 949
BstYI RGATCY 1 cut(s) 949
BsuRI GGCC 2 cut(s) 349, 431
BtgI CCRYGG 2 cut(s) 909, 1205
BtsCI GGATG 4 cut(s) 124, 306, 362, 710
BtsIMutI CAGTG 2 cut(s) 1065, 1201
Cac8I GCNNGC 3 cut(s) 209, 441, 445
CciI TCATGA 1 cut(s) 778
Cfr10I RCCGGY 1 cut(s) 1175
Cfr9I CCCGGG 1 cut(s) 1155
CseI GACGC 1 cut(s) 931
Csp6I GTAC 4 cut(s) 98, 612, 685, 977
CviAII CATG 4 cut(s) 385, 779, 910, 1090
CviQI GTAC 4 cut(s) 98, 612, 685, 977
DdeI CTNAG 3 cut(s) 857, 897, 1096
DpnI GATC 4 cut(s) 518, 804, 951, 1200
DpnII GATC 4 cut(s) 516, 802, 949, 1198
DraIII CACNNNGTG 1 cut(s) 236
EaeI YGGCCR 2 cut(s) 347, 429
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
EciI GGCGGA 1 cut(s) 1191
Ecl136II GAGCTC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 909
Eco24I GRGCYC 1 cut(s) 29
Eco31I GGTCTC 1 cut(s) 960
Eco53kI GAGCTC 1 cut(s) 27
Eco57I CTGAAG 2 cut(s) 789, 849
Eco88I CYCGRG 1 cut(s) 1155
Eco91I GGTNACC 1 cut(s) 1178
EcoICRI GAGCTC 1 cut(s) 27
EcoO65I GGTNACC 1 cut(s) 1178
EcoRII CCWGG 1 cut(s) 822
EcoT14I CCWWGG 1 cut(s) 909
EcoT38I GRGCYC 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 909
FaeI CATG 4 cut(s) 388, 782, 913, 1093
FaqI GGGAC 1 cut(s) 543
FatI CATG 4 cut(s) 384, 778, 909, 1089
FauNDI CATATG 1 cut(s) 472
FbaI TGATCA 1 cut(s) 516
Fnu4HI GCNGC 2 cut(s) 212, 753
FokI GGATG 4 cut(s) 131, 313, 349, 717
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 212, 753
FspBI CTAG 6 cut(s) 353, 440, 492, 501, 510, 980
GluI GCNGC 2 cut(s) 212, 753
GsuI CTGGAG 2 cut(s) 565, 1177
HaeIII GGCC 2 cut(s) 349, 431
HapII CCGG 6 cut(s) 115, 1023, 1129, 1156, 1176, 1183
HgaI GACGC 1 cut(s) 931
Hin1I GRCGYC 1 cut(s) 942
Hin1II CATG 4 cut(s) 388, 782, 913, 1093
HindIII AAGCTT 1 cut(s) 1080
HinfI GANTC 2 cut(s) 284, 923
HpaII CCGG 6 cut(s) 115, 1023, 1129, 1156, 1176, 1183
HphI GGTGA 6 cut(s) 176, 191, 263, 536, 703, 858
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 463, 922
Hpy188III TCNNGA 6 cut(s) 400, 492, 715, 779, 963, 1039
Hpy8I GTNNAC 1 cut(s) 182
Hpy99I CGWCG 1 cut(s) 947
HpyAV CCTTC 6 cut(s) 143, 154, 225, 290, 703, 742
HpyCH4III ACNGT 2 cut(s) 487, 1069
HpyCH4IV ACGT 2 cut(s) 49, 93
HpyCH4V TGCA 3 cut(s) 574, 1001, 1169
HpyF10VI GCNNNNNNNGC 3 cut(s) 217, 355, 1130
HpyF3I CTNAG 3 cut(s) 857, 897, 1096
HpySE526I ACGT 2 cut(s) 49, 93
Hsp92I GRCGYC 1 cut(s) 942
Hsp92II CATG 4 cut(s) 388, 782, 913, 1093
Ksp22I TGATCA 1 cut(s) 516
Kzo9I GATC 4 cut(s) 516, 802, 949, 1198
LmnI GCTCC 1 cut(s) 584
Lsp1109I GCAGC 1 cut(s) 764
LweI GCATC 2 cut(s) 988, 994
MaeI CTAG 6 cut(s) 353, 440, 492, 501, 510, 980
MaeII ACGT 2 cut(s) 49, 93
MaeIII GTNAC 3 cut(s) 924, 1085, 1178
MalI GATC 4 cut(s) 518, 804, 951, 1200
MboI GATC 4 cut(s) 516, 802, 949, 1198
MboII GAAGA 7 cut(s) 270, 305, 787, 802, 811, 1066, 1151
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 3 cut(s) 29, 360, 1156
MlsI TGGCCA 2 cut(s) 349, 431
MluCI AATT 4 cut(s) 433, 480, 562, 815
MluNI TGGCCA 2 cut(s) 349, 431
MlyI GAGTC 1 cut(s) 932
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 7 cut(s) 191, 498, 520, 619, 625, 733, 1044
Mox20I TGGCCA 2 cut(s) 349, 431
MroXI GAANNNNTTC 1 cut(s) 774
MscI TGGCCA 2 cut(s) 349, 431
MseI TTAA 5 cut(s) 156, 312, 479, 552, 1243
Msp20I TGGCCA 2 cut(s) 349, 431
MspA1I CMGCKG 1 cut(s) 1100
MspI CCGG 6 cut(s) 115, 1023, 1129, 1156, 1176, 1183
MspR9I CCNGG 6 cut(s) 116, 824, 1130, 1156, 1157, 1184
MvaI CCWGG 1 cut(s) 824
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 3 cut(s) 217, 355, 1130
NciI CCSGG 5 cut(s) 116, 1130, 1156, 1157, 1184
NcoI CCATGG 1 cut(s) 909
NdeI CATATG 1 cut(s) 472
NdeII GATC 4 cut(s) 516, 802, 949, 1198
NheI GCTAGC 1 cut(s) 439
NlaIII CATG 4 cut(s) 388, 782, 913, 1093
NlaIV GGNNCC 1 cut(s) 1153
NmuCI GTSAC 2 cut(s) 924, 1085
NspI RCATGY 2 cut(s) 388, 1093
PagI TCATGA 1 cut(s) 778
PciI ACATGT 1 cut(s) 384
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 942
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 114
PkrI GCNGC 2 cut(s) 213, 754
PleI GAGTC 1 cut(s) 931
PpsI GAGTC 1 cut(s) 931
PscI ACATGT 1 cut(s) 384
PshBI ATTAAT 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 822
PspEI GGTNACC 1 cut(s) 1178
PspGI CCWGG 1 cut(s) 822
PspN4I GGNNCC 1 cut(s) 1153
PsuI RGATCY 1 cut(s) 949
PvuII CAGCTG 1 cut(s) 1100
RsaI GTAC 4 cut(s) 99, 613, 686, 978
RsaNI GTAC 4 cut(s) 98, 612, 685, 977
SacI GAGCTC 1 cut(s) 29
SaqAI TTAA 5 cut(s) 156, 312, 479, 552, 1243
SatI GCNGC 2 cut(s) 212, 753
Sau3AI GATC 4 cut(s) 516, 802, 949, 1198
ScaI AGTACT 1 cut(s) 686
SchI GAGTC 1 cut(s) 932
ScrFI CCNGG 6 cut(s) 116, 824, 1130, 1156, 1157, 1184
SduI GDGCHC 3 cut(s) 29, 360, 1156
SfaNI GCATC 2 cut(s) 988, 994
SmaI CCCGGG 1 cut(s) 1157
SmlI CTYRAG 5 cut(s) 28, 80, 601, 756, 1037
SmoI CTYRAG 5 cut(s) 28, 80, 601, 756, 1037
SpeI ACTAGT 1 cut(s) 352
Sse9I AATT 4 cut(s) 433, 480, 562, 815
SsiI CCGC 3 cut(s) 212, 233, 1202
SspMI CTAG 6 cut(s) 353, 440, 492, 501, 510, 980
SstI GAGCTC 1 cut(s) 29
StyD4I CCNGG 6 cut(s) 114, 822, 1128, 1154, 1155, 1182
StyI CCWWGG 1 cut(s) 909
TaaI ACNGT 2 cut(s) 487, 1069
TaiI ACGT 2 cut(s) 52, 96
TaqI TCGA 1 cut(s) 196
TasI AATT 4 cut(s) 433, 480, 562, 815
TatI WGTACW 3 cut(s) 97, 684, 976
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 5 cut(s) 156, 312, 479, 552, 1243
Tru9I TTAA 5 cut(s) 156, 312, 479, 552, 1243
TscAI CASTG 2 cut(s) 1072, 1201
TseFI GTSAC 2 cut(s) 924, 1085
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 2 cut(s) 924, 1085
TspDTI ATGAA 4 cut(s) 72, 767, 795, 1152
TspGWI ACGGA 1 cut(s) 638
TspMI CCCGGG 1 cut(s) 1155
TspRI CASTG 2 cut(s) 1072, 1201
VspI ATTAAT 1 cut(s) 479
XbaI TCTAGA 1 cut(s) 491
XceI RCATGY 2 cut(s) 388, 1093
XmaI CCCGGG 1 cut(s) 1155
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 6 cut(s) 353, 440, 492, 501, 510, 980
ZrmI AGTACT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.