Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002963.1

Orthogroup ID

OG0007808

Physical Location & Seq

Genomic Coordinates Reverse (-)

84650 .. 85611

Gene Structure 962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgaccaccaaatccatccaagagcttctcaatcttctcaatcctcctccctcctccacatcctcctccgccgccgtcaagcccgagattccggccacgaccgcccgccctcctccaccgccgccgccgacctccgacgccgacaccatcttcatccccagctactccagctggttctccttcgaccgcatctaccagaccgagcgccgatccctcccggaattcttcaactcccgctcgccggccaaaaaccctaacctctacaagtactaccgcaaccacatcatcaagcactaccgctccaaccccggccgccgcctcactttcaccgacgtccgcaaaaccctagtcggcgacgtcggctccatccacagggtcttcaatttcctcgaggcttggggtttgatcaattacgctccctcgatcaagtcgctgaaatgggaggagaaggacgcgaaatccgccgccgcgcacggcggggctcagtcgccgaagcccggtccaaaagacgcttctgcccctaacaaggacaagaagaggacctgcaatggctgcaagtctctctgcagcattgcctgctttgtttccgaaaagtatgatatgactctatgtgcaagatgttatgttcgtgggaactatcagattggtgtgaattcttcggattttagaagggttgagattaatgaggagactggggatggttgggcagatagagacacattgcatttgctagaagcactcatgcattatggcgatgattgggggaaggttgcgcaacatgttggtagaagcgagaagtgctgcaatgcacagttggagcatttcacatgcccgaaagggtttatcttgggcctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SWIRM SWIRM-assoc_1

Protein Analysis

285

Amino Acids

31.92

Weight (kDa)

9.06

Isoelectric Point (pI)

53.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	60 - 138	3.3e-24	SWIRM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33610
fragaria_vesca	FvH4_3g02280
malus_domestica	MD00G1206800.v1.1 MD05G1344100.v1.1 MD10G1320100.v1.1
prunus_persica	Prupe.4G022300_v2.0.a1 Prupe.5G005400_v2.0.a1
pyrus_communis	pycom05g31350 pycom17g04440
rosa_chinensis	RchiOBHm_Chr5g0003401
rosa_laevigata	RLG00000031136
rosa_multiflora	Rmu_co8020548.1_g000001 Rmu_sc0002963.1_g000013 Rmu_sc0009787.1_g000018 Rmu_sc0023940.1_g000003 Rmu_sc0030755.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072600 Rroxscaffold_1G00072620
rosa_rugosa	Rorug04G0403100
rosa_samantha	Rh5AG029700 Rh5BG029100 Rh5CG031900 Rh5DG029600
rosa_wichuraiana	Rw5G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	336, 360
AbsI	CCTCGAGG	1 cut(s)	389
Acc16I	TGCGCA	1 cut(s)	774
Acc36I	ACCTGC	1 cut(s)	551
AccBSI	CCGCTC	2 cut(s)	237, 300
AccII	CGCG	2 cut(s)	455, 470
AclWI	GGATC	1 cut(s)	204
AcoI	YGGCCR	3 cut(s)	93, 243, 310
AcsI	RAATTY	2 cut(s)	221, 652
AcyI	GRCGYC	3 cut(s)	138, 333, 357
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	4 cut(s)	241, 372, 497, 526
AflIII	ACRYGT	1 cut(s)	778
AgsI	TTSAA	2 cut(s)	229, 382
AjuI	GAANNNNNNNTTGG	2 cut(s)	496, 528
AluBI	AGCT	3 cut(s)	25, 162, 171
AluI	AGCT	3 cut(s)	25, 162, 171
Alw26I	GTCTC	3 cut(s)	564, 683, 708
AlwI	GGATC	1 cut(s)	204
Ama87I	CYCGRG	2 cut(s)	83, 389
AoxI	GGCC	4 cut(s)	93, 243, 310, 850
ApeKI	GCWGC	3 cut(s)	552, 567, 801
ApoI	RAATTY	2 cut(s)	221, 652
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AseI	ATTAAT	1 cut(s)	681
AspLEI	GCGC	3 cut(s)	207, 472, 775
AspS9I	GGNCC	3 cut(s)	500, 540, 850
AsuC2I	CCSGG	3 cut(s)	218, 309, 498
AsuHPI	GGTGA	1 cut(s)	319
AvaI	CYCGRG	2 cut(s)	83, 389
AvaII	GGWCC	2 cut(s)	500, 540
BanII	GRGCYC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	370
BbvI	GCAGC	3 cut(s)	539, 579, 788
BccI	CCATC	4 cut(s)	23, 155, 374, 692
BceAI	ACGGC	2 cut(s)	59, 490
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	3 cut(s)	218, 309, 498
BcoDI	GTCTC	3 cut(s)	564, 683, 708
BfaI	CTAG	2 cut(s)	347, 731
BfmI	CTRYAG	1 cut(s)	565
BfoI	RGCGCY	1 cut(s)	208
BfuAI	ACCTGC	1 cut(s)	551
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	3 cut(s)	218, 309, 498
Bme18I	GGWCC	2 cut(s)	500, 540
BmeT110I	CYCGRG	2 cut(s)	83, 389
BmgT120I	GGNCC	3 cut(s)	500, 540, 850
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	3 cut(s)	218, 309, 498
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	702
BpiI	GAAGAC	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	151
BpuMI	CCSGG	3 cut(s)	218, 309, 498
BsaHI	GRCGYC	3 cut(s)	138, 333, 357
BsaJI	CCNNGG	1 cut(s)	307
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 347, 377
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 372, 497, 526
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	697
Bse3DI	GCAATG	4 cut(s)	553, 570, 719, 811
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	5 cut(s)	15, 59, 153, 366, 703
BseLI	CCNNNNNNNGG	4 cut(s)	241, 372, 497, 526
BseMI	GCAATG	4 cut(s)	553, 570, 719, 811
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	697
BseRI	GAGGAG	6 cut(s)	36, 43, 55, 102, 458, 701
BseX3I	CGGCCG	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	539, 579, 788
BseYI	CCCAGC	1 cut(s)	158
Bsh1236I	CGCG	2 cut(s)	455, 470
Bsh1285I	CGRYCG	3 cut(s)	102, 187, 313
BshFI	GGCC	4 cut(s)	95, 245, 312, 852
BsiEI	CGRYCG	3 cut(s)	102, 187, 313
BsiHKCI	CYCGRG	2 cut(s)	83, 389
BsiSI	CCGG	5 cut(s)	92, 218, 242, 309, 498
BslI	CCNNNNNNNGG	4 cut(s)	241, 372, 497, 526
BsmAI	GTCTC	3 cut(s)	564, 683, 708
BsnI	GGCC	4 cut(s)	95, 245, 312, 852
BsoBI	CYCGRG	2 cut(s)	83, 389
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	209, 405, 423
BspANI	GGCC	4 cut(s)	95, 245, 312, 852
BspCNI	CTCAG	1 cut(s)	496
BspFNI	CGCG	2 cut(s)	455, 470
BspLI	GGNNCC	1 cut(s)	364
BspMAI	CTGCAG	1 cut(s)	569
BspMI	ACCTGC	1 cut(s)	551
BspPI	GGATC	1 cut(s)	204
BsrBI	CCGCTC	2 cut(s)	237, 300
BsrDI	GCAATG	4 cut(s)	553, 570, 719, 811
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	697
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	3 cut(s)	209, 405, 423
BssNI	GRCGYC	3 cut(s)	138, 333, 357
Bst4CI	ACNGT	1 cut(s)	813
Bst6I	CTCTTC	1 cut(s)	530
BstACI	GRCGYC	3 cut(s)	138, 333, 357
BstAPI	GCANNNNNTGC	2 cut(s)	552, 576
BstC8I	GCNNGC	4 cut(s)	106, 239, 243, 577
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	5 cut(s)	15, 59, 153, 366, 703
BstFNI	CGCG	2 cut(s)	455, 470
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	3 cut(s)	207, 472, 775
BstKTI	GATC	3 cut(s)	212, 408, 426
BstMAI	GTCTC	3 cut(s)	564, 683, 708
BstMBI	GATC	3 cut(s)	209, 405, 423
BstMCI	CGRYCG	3 cut(s)	102, 187, 313
BstMWI	GCNNNNNNNGC	7 cut(s)	101, 168, 360, 461, 552, 576, 798
BstNSI	RCATGY	2 cut(s)	782, 831
BstSCI	CCNGG	3 cut(s)	216, 307, 496
BstSFI	CTRYAG	1 cut(s)	565
BstUI	CGCG	2 cut(s)	455, 470
BstV1I	GCAGC	3 cut(s)	539, 579, 788
BstV2I	GAAGAC	1 cut(s)	370
BstZI	CGGCCG	1 cut(s)	310
BsuRI	GGCC	4 cut(s)	95, 245, 312, 852
BtgZI	GCGATG	1 cut(s)	768
BtsCI	GGATG	5 cut(s)	15, 59, 153, 366, 703
BveI	ACCTGC	1 cut(s)	551
Cac8I	GCNNGC	4 cut(s)	106, 239, 243, 577
CfoI	GCGC	3 cut(s)	207, 472, 775
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	3 cut(s)	500, 540, 850
CseI	GACGC	3 cut(s)	146, 461, 518
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	3 cut(s)	742, 779, 828
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	3 cut(s)	211, 407, 425
DpnII	GATC	3 cut(s)	209, 405, 423
EaeI	YGGCCR	3 cut(s)	93, 243, 310
EagI	CGGCCG	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
EciI	GGCGGA	2 cut(s)	58, 451
EclXI	CGGCCG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	500, 540
Eco52I	CGGCCG	1 cut(s)	310
Eco88I	CYCGRG	2 cut(s)	83, 389
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRI	GAATTC	2 cut(s)	221, 652
EcoT22I	ATGCAT	1 cut(s)	747
EcoT38I	GRGCYC	1 cut(s)	484
FaeI	CATG	3 cut(s)	745, 782, 831
FaiI	YATR	9 cut(s)	597, 602, 610, 624, 743, 750, 780, 829, 856
FatI	CATG	3 cut(s)	741, 778, 827
FauI	CCCGC	3 cut(s)	113, 242, 470
FbaI	TGATCA	1 cut(s)	405
FokI	GGATG	5 cut(s)	2, 46, 140, 353, 710
FriOI	GRGCYC	1 cut(s)	484
FspBI	CTAG	2 cut(s)	347, 731
FspI	TGCGCA	1 cut(s)	774
GlaI	GCGC	3 cut(s)	206, 471, 774
GsaI	CCCAGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	4 cut(s)	95, 245, 312, 852
HapII	CCGG	5 cut(s)	92, 218, 242, 309, 498
HgaI	GACGC	3 cut(s)	146, 461, 518
HhaI	GCGC	3 cut(s)	207, 472, 775
Hin1I	GRCGYC	3 cut(s)	138, 333, 357
Hin1II	CATG	3 cut(s)	745, 782, 831
Hin6I	GCGC	3 cut(s)	205, 470, 773
HinP1I	GCGC	3 cut(s)	205, 470, 773
HinfI	GANTC	2 cut(s)	88, 604
HpaII	CCGG	5 cut(s)	92, 218, 242, 309, 498
HphI	GGTGA	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	136, 589, 642, 661
Hpy99I	CGWCG	4 cut(s)	140, 335, 359, 362
HpyAV	CCTTC	4 cut(s)	190, 442, 663, 760
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4IV	ACGT	2 cut(s)	333, 357
HpyCH4V	TGCA	8 cut(s)	546, 555, 567, 614, 724, 745, 804, 809
HpyF10VI	GCNNNNNNNGC	7 cut(s)	101, 168, 360, 461, 552, 576, 798
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	2 cut(s)	333, 357
Hsp92I	GRCGYC	3 cut(s)	138, 333, 357
Hsp92II	CATG	3 cut(s)	745, 782, 831
HspAI	GCGC	3 cut(s)	205, 470, 773
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	209, 405, 423
LmnI	GCTCC	4 cut(s)	305, 368, 421, 817
Lsp1109I	GCAGC	3 cut(s)	539, 579, 788
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	2 cut(s)	347, 731
MaeII	ACGT	2 cut(s)	333, 357
MalI	GATC	3 cut(s)	211, 407, 425
MbiI	CCGCTC	2 cut(s)	237, 300
MboI	GATC	3 cut(s)	209, 405, 423
MboII	GAAGA	6 cut(s)	26, 142, 217, 370, 547, 648
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	4 cut(s)	221, 382, 409, 652
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	3 cut(s)	159, 327, 795
Mph1103I	ATGCAT	1 cut(s)	747
MroNI	GCCGGC	1 cut(s)	241
MseI	TTAA	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	5 cut(s)	92, 218, 242, 309, 498
MspR9I	CCNGG	3 cut(s)	218, 309, 498
MvnI	CGCG	2 cut(s)	455, 470
MwoI	GCNNNNNNNGC	7 cut(s)	101, 168, 360, 461, 552, 576, 798
NaeI	GCCGGC	1 cut(s)	243
NciI	CCSGG	3 cut(s)	218, 309, 498
NdeII	GATC	3 cut(s)	209, 405, 423
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	3 cut(s)	745, 782, 831
NlaIV	GGNNCC	1 cut(s)	364
NsbI	TGCGCA	1 cut(s)	774
NsiI	ATGCAT	1 cut(s)	747
NspI	RCATGY	2 cut(s)	782, 831
PaeR7I	CTCGAG	1 cut(s)	389
PciI	ACATGT	1 cut(s)	778
PdiI	GCCGGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	216
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
PpuMI	RGGWCCY	1 cut(s)	540
PscI	ACATGT	1 cut(s)	778
PshBI	ATTAAT	1 cut(s)	681
Psp5II	RGGWCCY	1 cut(s)	540
PspFI	CCCAGC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	3 cut(s)	500, 540, 850
PspPPI	RGGWCCY	1 cut(s)	540
PspXI	VCTCGAGB	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	569
PvuII	CAGCTG	1 cut(s)	171
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	681
Sau3AI	GATC	3 cut(s)	209, 405, 423
Sau96I	GGNCC	3 cut(s)	500, 540, 850
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	1 cut(s)	598
ScrFI	CCNGG	3 cut(s)	218, 309, 498
SduI	GDGCHC	1 cut(s)	484
SetI	ASST	9 cut(s)	27, 134, 164, 173, 261, 336, 360, 545, 771
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	565
Sfr274I	CTCGAG	1 cut(s)	389
SinI	GGWCC	2 cut(s)	500, 540
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	4 cut(s)	221, 382, 409, 652
SspMI	CTAG	2 cut(s)	347, 731
StyD4I	CCNGG	3 cut(s)	216, 307, 496
TaaI	ACNGT	1 cut(s)	813
TaiI	ACGT	2 cut(s)	336, 360
TaqI	TCGA	3 cut(s)	183, 390, 422
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	4 cut(s)	221, 382, 409, 652
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	7 cut(s)	74, 124, 127, 315, 318, 467, 470
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TseI	GCWGC	3 cut(s)	552, 567, 801
TspDTI	ATGAA	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	500, 540
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	2 cut(s)	221, 652
XceI	RCATGY	2 cut(s)	782, 831
XhoI	CTCGAG	1 cut(s)	389
XspI	CTAG	2 cut(s)	347, 731
ZraI	GACGTC	2 cut(s)	334, 358
ZrmI	AGTACT	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.