Rmu_sc0002971.1_g000010

Monoglyceride

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002971.1
OG0013002
Physical Location & Seq
Forward (+)
48826 .. 50956
2131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002971.1_g000010.1.cds

Sequence Viewer

Length: 1143 bp
atggagcaactgacctcgggagcgagcaaccgcatcatcccgctcctcaaggccctgaggacctccctcctcttcgtccacaccgtcttcctctcgctgctcctcttcttcttccgccgccgcggccgctgcctgtcggaatctctcacggagtcgacggccaagaagcggaaatcggcgtggaggagagaggaggaggacactttcagacggagagctttggccgaggaactccacaccggagacggagacggagactgccggttccgtcgcgacaccttcttgttctacggtgtaaggcaaagcgccttattctgccgctcatggtttccggtctccggtaatccaagggctattttggtcatcatacatgggctgaatgaacacagtggaagatatgctgattttgcgaggcaactaacctcatgcaactttggggtctatgcaatggactggataggtcatggtggcagtgatggattgcatggctatgttccttcacttgaccatgttgttgctgatactggggatttcttggaaaagattagattagagaaccctggagcaccgtgcttcctctttggtcactcaactggaggagctgtggttttgaaggcggcaacctatgctaaaattgaagaaaaggtggaaggtataatactgacctcaccagctttgcgtgttaagccagcacatccaattgttggggctgtggctccacttgtttctttggtcgctcccaagttccagtttaaaggtgcaaacaaaaggggaattccagtatctagagatcctgcagcactggtagccaagtattccgatcccctggtctatacagggccaataagggtcagaacaggctatgagatattgcgtatctctgctcacttgacgagaaactttaagtttgtgactgtacccttctttgttcttcatgggactgctgatagagtcacggatcctctggcctctcaggatctgtacacagaggcagcgtctgagttcaaagacataaagctctatgatggtttcttgcacgatctcctgtttgagcctgaacgcgaggagattgcgcaggatataattgactggatggagaagcgattaggtgctgtccttgaagacgttcccaactttgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

380

Amino Acids

42.5

Weight (kDa)

8.51

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013002)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11650 AT5G11650
fragaria_vesca FvH4_2g35400
malus_domestica MD08G1112500.v1.1 MD15G1091700.v1.1
prunus_persica Prupe.1G446700_v2.0.a1
pyrus_communis pycom08g09340 pycom15g08550
rosa_chinensis RchiOBHm_Chr6g0306501
rosa_laevigata RLG00000010791
rosa_multiflora Rmu_sc0002971.1_g000010
rosa_roxburghii Rroxscaffold_7G00161720
rosa_rugosa Rorug06G0350000
rosa_samantha Rh6AG462100 Rh6BG438700 Rh6CG476400 Rh6DG463100
rosa_wichuraiana Rw6G040280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1074
AccB7I CCANNNNNTGG 1 cut(s) 704
AccBSI CCGCTC 2 cut(s) 43, 321
AccI GTMKAC 1 cut(s) 155
AccII CGCG 3 cut(s) 123, 273, 1062
AclWI GGATC 5 cut(s) 785, 815, 953, 966, 984
AcoI YGGCCR 3 cut(s) 124, 159, 222
AcsI RAATTY 1 cut(s) 774
AfaI GTAC 2 cut(s) 918, 983
AfiI CCNNNNNNNGG 3 cut(s) 168, 338, 704
AgsI TTSAA 4 cut(s) 613, 638, 1006, 1121
AjnI CCWGG 2 cut(s) 559, 825
AluBI AGCT 4 cut(s) 218, 602, 674, 1018
AluI AGCT 4 cut(s) 218, 602, 674, 1018
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 4 cut(s) 237, 243, 249, 340
AlwI GGATC 5 cut(s) 785, 815, 953, 966, 984
AlwNI CAGNNNCTG 2 cut(s) 979, 998
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 6 cut(s) 51, 124, 159, 222, 839, 966
ApeKI GCWGC 4 cut(s) 97, 129, 797, 992
ApoI RAATTY 1 cut(s) 774
Asp700I GAANNNNTTC 1 cut(s) 1125
AspLEI GCGC 2 cut(s) 308, 1075
AspS9I GGNCC 3 cut(s) 52, 60, 839
AsuHPI GGTGA 1 cut(s) 660
AvaI CYCGRG 1 cut(s) 16
AvaII GGWCC 1 cut(s) 60
AxyI CCTNAGG 1 cut(s) 56
BamHI GGATCC 1 cut(s) 958
BarI GAAGNNNNNNTAC 2 cut(s) 642, 674
BbsI GAAGAC 2 cut(s) 79, 1128
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 4 cut(s) 84, 116, 809, 1004
BccI CCATC 3 cut(s) 470, 1019, 1087
BceAI ACGGC 1 cut(s) 174
BcgI CGANNNNNNTGC 2 cut(s) 1052, 1086
BciT130I CCWGG 2 cut(s) 561, 827
BcoDI GTCTC 4 cut(s) 237, 243, 249, 340
BfaI CTAG 1 cut(s) 786
BfmI CTRYAG 1 cut(s) 795
BfoI RGCGCY 1 cut(s) 309
BglI GCCNNNNNGGC 1 cut(s) 123
Bme1390I CCNGG 2 cut(s) 561, 827
Bme18I GGWCC 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 3 cut(s) 52, 60, 839
BmiI GGNNCC 3 cut(s) 266, 717, 960
BmrFI CCNGG 2 cut(s) 561, 827
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 534
BpiI GAAGAC 2 cut(s) 79, 1128
BpmI CTGGAG 2 cut(s) 582, 615
BpuEI CTTGAG 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 6 cut(s) 15, 121, 225, 347, 559, 825
BsaWI WCCGGW 3 cut(s) 239, 331, 338
BsaXI ACNNNNNCTCC 4 cut(s) 588, 591, 618, 621
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 338, 704
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 7 cut(s) 458, 529, 598, 748, 779, 807, 1094
Bse21I CCTNAGG 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 2 cut(s) 561, 827
BseDI CCNNGG 6 cut(s) 15, 121, 225, 347, 559, 825
BseGI GGATG 3 cut(s) 36, 694, 1098
BseLI CCNNNNNNNGG 3 cut(s) 168, 338, 704
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 3 cut(s) 47, 986, 990
BseNI ACTGG 7 cut(s) 458, 529, 598, 748, 779, 807, 1094
BseRI GAGGAG 8 cut(s) 35, 59, 92, 199, 206, 209, 612, 1079
BseX3I CGGCCG 1 cut(s) 124
BseXI GCAGC 4 cut(s) 84, 116, 809, 1004
Bsh1236I CGCG 3 cut(s) 123, 273, 1062
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 6 cut(s) 53, 126, 161, 224, 841, 968
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 568
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 4 cut(s) 240, 262, 332, 339
BslFI GGGAC 1 cut(s) 952
BslI CCNNNNNNNGG 3 cut(s) 168, 338, 704
BsmAI GTCTC 4 cut(s) 237, 243, 249, 340
BsmBI CGTCTC 2 cut(s) 237, 243
BsmFI GGGAC 1 cut(s) 952
BsnI GGCC 6 cut(s) 53, 126, 161, 224, 841, 968
Bso31I GGTCTC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 981
Bsp143I GATC 5 cut(s) 790, 820, 958, 976, 1039
Bsp68I TCGCGA 1 cut(s) 273
BspANI GGCC 6 cut(s) 53, 126, 161, 224, 841, 968
BspCNI CTCAG 3 cut(s) 48, 985, 991
BspFNI CGCG 3 cut(s) 123, 273, 1062
BspLI GGNNCC 3 cut(s) 266, 717, 960
BspMAI CTGCAG 1 cut(s) 799
BspPI GGATC 5 cut(s) 785, 815, 953, 966, 984
BspTNI GGTCTC 1 cut(s) 340
BsrBI CCGCTC 2 cut(s) 43, 321
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 981
BsrI ACTGG 7 cut(s) 458, 529, 598, 748, 779, 807, 1094
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 6 cut(s) 15, 121, 225, 347, 559, 825
BssMI GATC 5 cut(s) 790, 820, 958, 976, 1039
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 561, 827
Bst4CI ACNGT 5 cut(s) 85, 293, 389, 570, 916
Bst6I CTCTTC 2 cut(s) 77, 110
BstAPI GCANNNNNTGC 1 cut(s) 626
BstAUI TGTACA 1 cut(s) 981
BstC8I GCNNGC 2 cut(s) 25, 690
BstDEI CTNAG 3 cut(s) 56, 972, 999
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 3 cut(s) 36, 694, 1098
BstFNI CGCG 3 cut(s) 123, 273, 1062
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 2 cut(s) 308, 1075
BstKTI GATC 5 cut(s) 793, 823, 961, 979, 1042
BstMAI GTCTC 4 cut(s) 237, 243, 249, 340
BstMBI GATC 5 cut(s) 790, 820, 958, 976, 1039
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 7 cut(s) 123, 126, 129, 407, 626, 685, 806
BstNI CCWGG 2 cut(s) 561, 827
BstSCI CCNGG 2 cut(s) 559, 825
BstSFI CTRYAG 1 cut(s) 795
BstUI CGCG 3 cut(s) 123, 273, 1062
BstV1I GCAGC 4 cut(s) 84, 116, 809, 1004
BstV2I GAAGAC 2 cut(s) 79, 1128
BstX2I RGATCY 3 cut(s) 790, 958, 976
BstYI RGATCY 3 cut(s) 790, 958, 976
BstZI CGGCCG 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 56
BsuRI GGCC 6 cut(s) 53, 126, 161, 224, 841, 968
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 3 cut(s) 36, 694, 1098
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 3 cut(s) 394, 478, 800
BtuMI TCGCGA 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 25, 690
CaiI CAGNNNCTG 2 cut(s) 979, 998
CciNI GCGGCCGC 1 cut(s) 124
CfoI GCGC 2 cut(s) 308, 1075
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 3 cut(s) 52, 60, 839
Cfr42I CCGCGG 1 cut(s) 124
CseI GACGC 1 cut(s) 984
Csp6I GTAC 2 cut(s) 917, 982
CviAII CATG 7 cut(s) 324, 371, 426, 464, 485, 509, 935
CviQI GTAC 2 cut(s) 917, 982
DdeI CTNAG 3 cut(s) 56, 972, 999
DpnI GATC 5 cut(s) 792, 822, 960, 978, 1041
DpnII GATC 5 cut(s) 790, 820, 958, 976, 1039
DraI TTTAAA 1 cut(s) 754
EaeI YGGCCR 3 cut(s) 124, 159, 222
EagI CGGCCG 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 77, 110
EarI CTCTTC 2 cut(s) 77, 110
EciI GGCGGA 1 cut(s) 104
EclXI CGGCCG 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 60
Eco52I CGGCCG 1 cut(s) 124
Eco81I CCTNAGG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 16
EcoO109I RGGNCCY 2 cut(s) 52, 60
EcoRI GAATTC 1 cut(s) 774
EcoRII CCWGG 2 cut(s) 559, 825
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
Esp3I CGTCTC 2 cut(s) 237, 243
FaeI CATG 7 cut(s) 327, 374, 429, 467, 488, 512, 938
FaqI GGGAC 1 cut(s) 952
FatI CATG 7 cut(s) 323, 370, 425, 463, 484, 508, 934
FauI CCCGC 1 cut(s) 48
FblI GTMKAC 1 cut(s) 155
FokI GGATG 3 cut(s) 23, 681, 1105
FspBI CTAG 1 cut(s) 786
FspI TGCGCA 1 cut(s) 1074
GlaI GCGC 2 cut(s) 307, 1074
GsuI CTGGAG 2 cut(s) 582, 615
HaeII RGCGCY 1 cut(s) 309
HaeIII GGCC 6 cut(s) 53, 126, 161, 224, 841, 968
HapII CCGG 4 cut(s) 240, 262, 332, 339
HgaI GACGC 1 cut(s) 984
HhaI GCGC 2 cut(s) 308, 1075
Hin1II CATG 7 cut(s) 327, 374, 429, 467, 488, 512, 938
Hin6I GCGC 2 cut(s) 306, 1073
HinP1I GCGC 2 cut(s) 306, 1073
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 3 cut(s) 140, 152, 951
HpaII CCGG 4 cut(s) 240, 262, 332, 339
HphI GGTGA 1 cut(s) 660
Hpy166II GTNNAC 3 cut(s) 79, 156, 984
Hpy188I TCNGA 5 cut(s) 139, 209, 820, 854, 1000
Hpy188III TCNNGA 4 cut(s) 18, 272, 786, 974
Hpy8I GTNNAC 3 cut(s) 79, 156, 984
Hpy99I CGWCG 2 cut(s) 160, 273
HpyAV CCTTC 5 cut(s) 289, 507, 607, 644, 931
HpyCH4III ACNGT 5 cut(s) 85, 293, 389, 570, 916
HpyCH4IV ACGT 1 cut(s) 1125
HpyCH4V TGCA 7 cut(s) 429, 446, 484, 761, 797, 1036, 1139
HpyF10VI GCNNNNNNNGC 7 cut(s) 123, 126, 129, 407, 626, 685, 806
HpyF3I CTNAG 3 cut(s) 56, 972, 999
HpySE526I ACGT 1 cut(s) 1125
Hsp92II CATG 7 cut(s) 327, 374, 429, 467, 488, 512, 938
HspAI GCGC 2 cut(s) 306, 1073
KspI CCGCGG 1 cut(s) 124
Kzo9I GATC 5 cut(s) 790, 820, 958, 976, 1039
LmnI GCTCC 8 cut(s) 4, 20, 48, 105, 563, 599, 721, 742
Lsp1109I GCAGC 4 cut(s) 84, 116, 809, 1004
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 786
MaeII ACGT 1 cut(s) 1125
MaeIII GTNAC 3 cut(s) 584, 910, 952
MalI GATC 5 cut(s) 792, 822, 960, 978, 1041
MbiI CCGCTC 2 cut(s) 43, 321
MboI GATC 5 cut(s) 790, 820, 958, 976, 1039
MboII GAAGA 9 cut(s) 64, 79, 97, 100, 103, 405, 650, 923, 1133
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 3 cut(s) 790, 958, 976
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 4 cut(s) 633, 699, 774, 1083
MlyI GAGTC 2 cut(s) 161, 960
MmeI TCCRAC 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 1125
MseI TTAA 3 cut(s) 684, 753, 903
MslI CAYNNNNRTG 1 cut(s) 489
MspA1I CMGCKG 2 cut(s) 123, 129
MspI CCGG 4 cut(s) 240, 262, 332, 339
MspR9I CCNGG 2 cut(s) 561, 827
MunI CAATTG 1 cut(s) 699
MvaI CCWGG 2 cut(s) 561, 827
MvnI CGCG 3 cut(s) 123, 273, 1062
MwoI GCNNNNNNNGC 7 cut(s) 123, 126, 129, 407, 626, 685, 806
NdeII GATC 5 cut(s) 790, 820, 958, 976, 1039
NlaIII CATG 7 cut(s) 327, 374, 429, 467, 488, 512, 938
NlaIV GGNNCC 3 cut(s) 266, 717, 960
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 3 cut(s) 584, 910, 952
NotI GCGGCCGC 1 cut(s) 124
NruI TCGCGA 1 cut(s) 273
NsbI TGCGCA 1 cut(s) 1074
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 1125
PfeI GAWTC 1 cut(s) 140
PflMI CCANNNNNTGG 1 cut(s) 704
PleI GAGTC 2 cut(s) 160, 959
PpsI GAGTC 2 cut(s) 160, 959
PpuMI RGGWCCY 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 559, 825
PspGI CCWGG 2 cut(s) 559, 825
PspN4I GGNNCC 3 cut(s) 266, 717, 960
PspPI GGNCC 3 cut(s) 52, 60, 839
PspPPI RGGWCCY 1 cut(s) 60
PstI CTGCAG 1 cut(s) 799
PstNI CAGNNNCTG 2 cut(s) 979, 998
PsuI RGATCY 3 cut(s) 790, 958, 976
RruI TCGCGA 1 cut(s) 273
RsaI GTAC 2 cut(s) 918, 983
RsaNI GTAC 2 cut(s) 917, 982
RseI CAYNNNNRTG 1 cut(s) 489
SacII CCGCGG 1 cut(s) 124
SalI GTCGAC 1 cut(s) 154
SaqAI TTAA 3 cut(s) 684, 753, 903
Sau3AI GATC 5 cut(s) 790, 820, 958, 976, 1039
Sau96I GGNCC 3 cut(s) 52, 60, 839
SchI GAGTC 2 cut(s) 161, 960
ScrFI CCNGG 2 cut(s) 561, 827
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 1 cut(s) 42
SfcI CTRYAG 1 cut(s) 795
Sfr303I CCGCGG 1 cut(s) 124
SgrBI CCGCGG 1 cut(s) 124
SinI GGWCC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 4 cut(s) 633, 699, 774, 1083
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 2 cut(s) 559, 825
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 5 cut(s) 85, 293, 389, 570, 916
TaiI ACGT 1 cut(s) 1128
TaqI TCGA 1 cut(s) 155
TasI AATT 4 cut(s) 633, 699, 774, 1083
TatI WGTACW 1 cut(s) 981
TauI GCSGC 6 cut(s) 120, 123, 126, 129, 321, 620
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 3 cut(s) 684, 753, 903
Tru9I TTAA 3 cut(s) 684, 753, 903
TscAI CASTG 3 cut(s) 394, 478, 807
TseFI GTSAC 3 cut(s) 584, 910, 952
TseI GCWGC 4 cut(s) 97, 129, 797, 992
Tsp45I GTSAC 3 cut(s) 584, 910, 952
TspDTI ATGAA 2 cut(s) 396, 923
TspGWI ACGGA 6 cut(s) 164, 226, 257, 261, 267, 971
TspRI CASTG 3 cut(s) 394, 478, 807
Van91I CCANNNNNTGG 1 cut(s) 704
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 1 cut(s) 774
XbaI TCTAGA 1 cut(s) 785
XmiI GTMKAC 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 1125
XspI CTAG 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.