Rh6DG463100

Monoglyceride

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013002
Physical Location & Seq
Reverse (-)
63174614 .. 63178504
3891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG463100.1

Sequence Viewer

Length: 810 bp
ATGTATTGTAATTTCAGGGCTATTTTGGTCATCATACATGGGCTGAATGAACACAGTGGAAGATATGCTGATTTTGCGAGGCAACTAACCTCATGCAACTTTGGGGTTTATGCAATGGACTGGATAGGTCATGGTGGCAGTGATGGATTGCATGGCTATGTTCCTTCACTTGACCATGTTGTTGCTGATACTGGGGATTTCTTGGAAAAGATTAGATTAGAGAACCCTGGAGCACCGTGCTTCCTCTTTGGTCACTCAACTGGAGGAGCTGTGGTTTTGAAGGCGGCAACCTATGCTAAAATTGAAGAAAAGGTGGAAGGTATAATACTGACCTCACCAGCTTTGCGTGTTAAGCCAGCACATCCAATTGTTGGGGCTGTGGCTCCACTTGTTTCTTTGGTCGCTCCCAAGTTCCAGTTTAAAGGTGCAAACAAAAGGGGAATTCCAGTATCTAGAGATCCTGCAGCACTGGTAGCCAAGTATTCCGATCCCCTGGTCTATACAGGGCCAATAAGGGTCAGAACAGGCTATGAGATATTGCGTATCTCTGCTCACTTGACGAGAAACTTTAAGTTTGTGACTGTACCCTTCTTTGTTCTTCATGGGACTGCTGATAGAGTCACGGATCCTCTGGCCTCTCAGGATCTGTACACAGAGGCAGCGTCTGAGTTCAAAGACATAAAGCTCTATGATGGTTTCTTGCACGATCTCCTGTTTGAGCCTGAACGCGAAGAGATTGCGCAGGATATAATTGACTGGATGGAGAAGCGATTAGGTGCTGGCCTTGAAGACGTTACCAACTTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

269

Amino Acids

29.6

Weight (kDa)

6.05

Isoelectric Point (pI)

26.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 6 - 242 1.5e-74 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 8 - 223 2.1e-15 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 9 - 221 2.1e-16 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013002)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G11650 AT5G11650
fragaria_vesca FvH4_2g35400
malus_domestica MD08G1112500.v1.1 MD15G1091700.v1.1
prunus_persica Prupe.1G446700_v2.0.a1
pyrus_communis pycom08g09340 pycom15g08550
rosa_chinensis RchiOBHm_Chr6g0306501
rosa_laevigata RLG00000010791
rosa_multiflora Rmu_sc0002971.1_g000010
rosa_roxburghii Rroxscaffold_7G00161720
rosa_rugosa Rorug06G0350000
rosa_samantha Rh6AG462100 Rh6BG438700 Rh6CG476400 Rh6DG463100
rosa_wichuraiana Rw6G040280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 741
AccB7I CCANNNNNTGG 1 cut(s) 371
AccII CGCG 1 cut(s) 729
AciI CCGC 1 cut(s) 284
AclWI GGATC 5 cut(s) 452, 482, 620, 633, 651
AcsI RAATTY 1 cut(s) 441
AfaI GTAC 2 cut(s) 585, 650
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 4 cut(s) 280, 305, 673, 788
AjnI CCWGG 2 cut(s) 226, 492
AluBI AGCT 3 cut(s) 269, 341, 685
AluI AGCT 3 cut(s) 269, 341, 685
Alw21I GWGCWC 1 cut(s) 235
AlwI GGATC 5 cut(s) 452, 482, 620, 633, 651
AlwNI CAGNNNCTG 2 cut(s) 646, 665
AoxI GGCC 3 cut(s) 506, 633, 781
ApeKI GCWGC 2 cut(s) 464, 659
ApoI RAATTY 1 cut(s) 441
AspLEI GCGC 1 cut(s) 742
AspS9I GGNCC 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 327
BamHI GGATCC 1 cut(s) 625
BarI GAAGNNNNNNTAC 2 cut(s) 309, 341
BbsI GAAGAC 1 cut(s) 795
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 476, 671
BccI CCATC 3 cut(s) 137, 686, 754
BcgI CGANNNNNNTGC 2 cut(s) 719, 753
BciT130I CCWGG 2 cut(s) 228, 494
BfaI CTAG 1 cut(s) 453
BfmI CTRYAG 1 cut(s) 462
BisI GCNGC 3 cut(s) 285, 465, 660
BlsI GCNGC 3 cut(s) 286, 466, 661
Bme1390I CCNGG 2 cut(s) 228, 494
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 2 cut(s) 384, 627
BmrFI CCNGG 2 cut(s) 228, 494
BmrI ACTGGG 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 795
BpmI CTGGAG 2 cut(s) 249, 282
BsaJI CCNNGG 2 cut(s) 226, 492
BsaXI ACNNNNNCTCC 4 cut(s) 255, 258, 285, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 7 cut(s) 125, 196, 265, 415, 446, 474, 761
Bse3DI GCAATG 1 cut(s) 120
BseBI CCWGG 2 cut(s) 228, 494
BseDI CCNNGG 2 cut(s) 226, 492
BseGI GGATG 2 cut(s) 361, 765
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 653, 657
BseNI ACTGG 7 cut(s) 125, 196, 265, 415, 446, 474, 761
BseRI GAGGAG 1 cut(s) 279
BseXI GCAGC 2 cut(s) 476, 671
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 3 cut(s) 508, 635, 783
BsiHKAI GWGCWC 1 cut(s) 235
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 619
BsnI GGCC 3 cut(s) 508, 635, 783
Bsp1286I GDGCHC 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 5 cut(s) 457, 487, 625, 643, 706
BspACI CCGC 1 cut(s) 284
BspANI GGCC 3 cut(s) 508, 635, 783
BspCNI CTCAG 2 cut(s) 652, 658
BspFNI CGCG 1 cut(s) 729
BspLI GGNNCC 2 cut(s) 384, 627
BspMAI CTGCAG 1 cut(s) 466
BspPI GGATC 5 cut(s) 452, 482, 620, 633, 651
BsrDI GCAATG 1 cut(s) 120
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 7 cut(s) 125, 196, 265, 415, 446, 474, 761
BssECI CCNNGG 2 cut(s) 226, 492
BssMI GATC 5 cut(s) 457, 487, 625, 643, 706
Bst2UI CCWGG 2 cut(s) 228, 494
Bst4CI ACNGT 3 cut(s) 56, 237, 583
Bst6I CTCTTC 1 cut(s) 726
BstAPI GCANNNNNTGC 1 cut(s) 293
BstAUI TGTACA 1 cut(s) 648
BstC8I GCNNGC 2 cut(s) 357, 781
BstDEI CTNAG 2 cut(s) 639, 666
BstF5I GGATG 2 cut(s) 361, 765
BstFNI CGCG 1 cut(s) 729
BstHHI GCGC 1 cut(s) 742
BstKTI GATC 5 cut(s) 460, 490, 628, 646, 709
BstMBI GATC 5 cut(s) 457, 487, 625, 643, 706
BstMWI GCNNNNNNNGC 4 cut(s) 74, 293, 352, 473
BstNI CCWGG 2 cut(s) 228, 494
BstSCI CCNGG 2 cut(s) 226, 492
BstSFI CTRYAG 1 cut(s) 462
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 2 cut(s) 476, 671
BstV2I GAAGAC 1 cut(s) 795
BstX2I RGATCY 3 cut(s) 457, 625, 643
BstYI RGATCY 3 cut(s) 457, 625, 643
BsuRI GGCC 3 cut(s) 508, 635, 783
BtsCI GGATG 2 cut(s) 361, 765
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 3 cut(s) 61, 145, 467
Cac8I GCNNGC 2 cut(s) 357, 781
CaiI CAGNNNCTG 2 cut(s) 646, 665
CfoI GCGC 1 cut(s) 742
Cfr13I GGNCC 1 cut(s) 506
CseI GACGC 1 cut(s) 651
Csp6I GTAC 2 cut(s) 584, 649
CviAII CATG 6 cut(s) 38, 93, 131, 152, 176, 602
CviQI GTAC 2 cut(s) 584, 649
DdeI CTNAG 2 cut(s) 639, 666
DpnI GATC 5 cut(s) 459, 489, 627, 645, 708
DpnII GATC 5 cut(s) 457, 487, 625, 643, 706
DraI TTTAAA 1 cut(s) 421
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
EcoRI GAATTC 1 cut(s) 441
EcoRII CCWGG 2 cut(s) 226, 492
FaeI CATG 6 cut(s) 41, 96, 134, 155, 179, 605
FaqI GGGAC 1 cut(s) 619
FatI CATG 6 cut(s) 37, 92, 130, 151, 175, 601
Fnu4HI GCNGC 3 cut(s) 285, 465, 660
FokI GGATG 2 cut(s) 348, 772
Fsp4HI GCNGC 3 cut(s) 285, 465, 660
FspBI CTAG 1 cut(s) 453
FspI TGCGCA 1 cut(s) 741
GlaI GCGC 1 cut(s) 741
GluI GCNGC 3 cut(s) 285, 465, 660
GsuI CTGGAG 2 cut(s) 249, 282
HaeIII GGCC 3 cut(s) 508, 635, 783
HgaI GACGC 1 cut(s) 651
HhaI GCGC 1 cut(s) 742
Hin1II CATG 6 cut(s) 41, 96, 134, 155, 179, 605
Hin6I GCGC 1 cut(s) 740
HinP1I GCGC 1 cut(s) 740
HinfI GANTC 1 cut(s) 618
HphI GGTGA 1 cut(s) 327
Hpy166II GTNNAC 1 cut(s) 651
Hpy188I TCNGA 3 cut(s) 487, 521, 667
Hpy188III TCNNGA 2 cut(s) 453, 641
Hpy8I GTNNAC 1 cut(s) 651
HpyAV CCTTC 4 cut(s) 174, 274, 311, 598
HpyCH4III ACNGT 3 cut(s) 56, 237, 583
HpyCH4IV ACGT 1 cut(s) 792
HpyCH4V TGCA 7 cut(s) 96, 113, 151, 428, 464, 703, 806
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 293, 352, 473
HpyF3I CTNAG 2 cut(s) 639, 666
HpySE526I ACGT 1 cut(s) 792
Hsp92II CATG 6 cut(s) 41, 96, 134, 155, 179, 605
HspAI GCGC 1 cut(s) 740
Kzo9I GATC 5 cut(s) 457, 487, 625, 643, 706
LmnI GCTCC 4 cut(s) 230, 266, 388, 409
Lsp1109I GCAGC 2 cut(s) 476, 671
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 792
MaeIII GTNAC 4 cut(s) 251, 577, 619, 793
MalI GATC 5 cut(s) 459, 489, 627, 645, 708
MboI GATC 5 cut(s) 457, 487, 625, 643, 706
MboII GAAGA 5 cut(s) 72, 317, 590, 743, 800
MfeI CAATTG 1 cut(s) 366
MflI RGATCY 3 cut(s) 457, 625, 643
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 5 cut(s) 10, 300, 366, 441, 750
MlyI GAGTC 1 cut(s) 627
MnlI CCTC 8 cut(s) 72, 100, 254, 257, 343, 639, 646, 649
MseI TTAA 3 cut(s) 351, 420, 570
MslI CAYNNNNRTG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 228, 494
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 2 cut(s) 228, 494
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 4 cut(s) 74, 293, 352, 473
NdeII GATC 5 cut(s) 457, 487, 625, 643, 706
NlaIII CATG 6 cut(s) 41, 96, 134, 155, 179, 605
NlaIV GGNNCC 2 cut(s) 384, 627
NmuCI GTSAC 3 cut(s) 251, 577, 619
NsbI TGCGCA 1 cut(s) 741
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 3 cut(s) 286, 466, 661
PleI GAGTC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 626
Psp6I CCWGG 2 cut(s) 226, 492
PspGI CCWGG 2 cut(s) 226, 492
PspN4I GGNNCC 2 cut(s) 384, 627
PspPI GGNCC 1 cut(s) 506
PstI CTGCAG 1 cut(s) 466
PstNI CAGNNNCTG 2 cut(s) 646, 665
PsuI RGATCY 3 cut(s) 457, 625, 643
RsaI GTAC 2 cut(s) 585, 650
RsaNI GTAC 2 cut(s) 584, 649
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 3 cut(s) 351, 420, 570
SatI GCNGC 3 cut(s) 285, 465, 660
Sau3AI GATC 5 cut(s) 457, 487, 625, 643, 706
Sau96I GGNCC 1 cut(s) 506
SchI GAGTC 1 cut(s) 627
ScrFI CCNGG 2 cut(s) 228, 494
SduI GDGCHC 1 cut(s) 235
SfcI CTRYAG 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 5 cut(s) 10, 300, 366, 441, 750
SsiI CCGC 1 cut(s) 284
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 2 cut(s) 226, 492
TaaI ACNGT 3 cut(s) 56, 237, 583
TaiI ACGT 1 cut(s) 795
TasI AATT 5 cut(s) 10, 300, 366, 441, 750
TatI WGTACW 1 cut(s) 648
TauI GCSGC 1 cut(s) 287
Tru1I TTAA 3 cut(s) 351, 420, 570
Tru9I TTAA 3 cut(s) 351, 420, 570
TscAI CASTG 3 cut(s) 61, 145, 474
TseFI GTSAC 3 cut(s) 251, 577, 619
TseI GCWGC 2 cut(s) 464, 659
Tsp45I GTSAC 3 cut(s) 251, 577, 619
TspDTI ATGAA 2 cut(s) 63, 590
TspGWI ACGGA 1 cut(s) 638
TspRI CASTG 3 cut(s) 61, 145, 474
Van91I CCANNNNNTGG 1 cut(s) 371
XapI RAATTY 1 cut(s) 441
XbaI TCTAGA 1 cut(s) 452
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.