Rmu_sc0003116.1_g000022

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003116.1
OG0010024
Physical Location & Seq
Forward (+)
124220 .. 125892
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
atgatgacggtgcacggcgaggtgaggctgccccaggcggtggcgtctagggctcagtttggtgtggagtcttttaagcctgagccttcttcgctcagcttagtctccttcaagcctccggattctcatgaagtggatgaggatgcgcatttggctattgctcaccaaatgtacaagtccggtaactataaagaggccttggagcgtagcaatatcgtatatgataggaatccaattcgaactgataacctccttcttttgggtgcaatatattatcagctgcatgactttgatatgtgtattgccaaaaatgaagaagcccttcgaattgaaccacattttgctgagtgttatggcaacatggccaatgcttggaaggaaaaaggcaatagtgaccttgctatccgctactatttgattgccattgagcttcgacccaatttctgtgatgcatggtcaaacttagctagtgcgtacatgcggaaaggaaggcttgaagaggcagcccagtgctgtcgtcaggcgcttcagctgaatccccatttggttgacgcccatagcaaccttggtaatttaatgaaagcacgaggcttggtgcaagaagtaagtcttaacaataaaatatcgttcgggcactga

Protein Analysis

212

Amino Acids

23.98

Weight (kDa)

6.13

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 115 - 148 5.4e-06 Tetratricopeptide repeat
TPR_11 PF13414 123 - 163 7.7e-06 TPR repeat
TPR_16 PF13432 127 - 180 2.8e-08 Tetratricopeptide repeat
TPR_17 PF13431 137 - 169 8.2e-06 Tetratricopeptide repeat
TPR_1 PF00515 150 - 181 9.7e-11 Tetratricopeptide repeat
TPR_2 PF07719 150 - 181 1.7e-09 Tetratricopeptide repeat
TPR_8 PF13181 150 - 180 4e-07 Tetratricopeptide repeat
TPR_11 PF13414 157 - 195 4e-09 TPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 147
AccB7I CCANNNNNTGG 2 cut(s) 40, 372
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 3 cut(s) 38, 406, 481
AcoI YGGCCR 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 512
AcyI GRCGYC 2 cut(s) 44, 552
AfaI GTAC 2 cut(s) 173, 476
AfiI CCNNNNNNNGG 3 cut(s) 40, 259, 372
AgsI TTSAA 3 cut(s) 112, 332, 497
AjnI CCWGG 1 cut(s) 33
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 5 cut(s) 99, 280, 430, 467, 532
AluI AGCT 5 cut(s) 99, 280, 430, 467, 532
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 109
Alw44I GTGCAC 1 cut(s) 11
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 2 cut(s) 195, 363
ApaLI GTGCAC 1 cut(s) 11
ApeKI GCWGC 3 cut(s) 28, 280, 503
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 2 cut(s) 148, 526
AsuHPI GGTGA 2 cut(s) 34, 155
AsuII TTCGAA 2 cut(s) 238, 325
BaeGI GKGCMC 2 cut(s) 15, 636
BalI TGGCCA 1 cut(s) 365
BanII GRGCYC 1 cut(s) 55
BauI CACGAG 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 3 cut(s) 15, 267, 515
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 48, 468
BfoI RGCGCY 1 cut(s) 527
BisI GCNGC 3 cut(s) 29, 281, 504
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 3 cut(s) 30, 282, 505
Bme1390I CCNGG 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 35
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 2 cut(s) 133, 439
BmuI ACTGGG 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 95
Bpu14I TTCGAA 2 cut(s) 238, 325
BsaBI GATNNNNATC 1 cut(s) 228
BsaHI GRCGYC 2 cut(s) 44, 552
BsaJI CCNNGG 3 cut(s) 33, 198, 565
BsaWI WCCGGW 2 cut(s) 118, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 259, 372
Bse1I ACTGG 1 cut(s) 508
Bse8I GATNNNNATC 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 3 cut(s) 33, 198, 565
BseGI GGATG 2 cut(s) 142, 148
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 3 cut(s) 40, 259, 372
BseMII CTCAG 4 cut(s) 68, 72, 109, 336
BseNI ACTGG 1 cut(s) 508
BseSI GKGCMC 2 cut(s) 15, 636
BseXI GCAGC 3 cut(s) 15, 267, 515
BshFI GGCC 2 cut(s) 197, 365
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 2 cut(s) 119, 180
BslI CCNNNNNNNGG 3 cut(s) 40, 259, 372
BsmAI GTCTC 1 cut(s) 109
BsnI GGCC 2 cut(s) 197, 365
Bsp119I TTCGAA 2 cut(s) 238, 325
Bsp1286I GDGCHC 3 cut(s) 15, 55, 636
Bsp13I TCCGGA 1 cut(s) 118
Bsp1407I TGTACA 1 cut(s) 171
Bsp1720I GCTNAGC 1 cut(s) 95
BspACI CCGC 3 cut(s) 38, 406, 481
BspANI GGCC 2 cut(s) 197, 365
BspCNI CTCAG 4 cut(s) 67, 73, 108, 337
BspEI TCCGGA 1 cut(s) 118
BspHI TCATGA 1 cut(s) 127
BspT104I TTCGAA 2 cut(s) 238, 325
BsrGI TGTACA 1 cut(s) 171
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 3 cut(s) 33, 198, 565
BssNI GRCGYC 2 cut(s) 44, 552
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 2 cut(s) 198, 565
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 492
BstACI GRCGYC 2 cut(s) 44, 552
BstAUI TGTACA 1 cut(s) 171
BstBI TTCGAA 2 cut(s) 238, 325
BstDEI CTNAG 6 cut(s) 54, 81, 95, 100, 345, 463
BstF5I GGATG 2 cut(s) 142, 148
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 2 cut(s) 148, 526
BstMAI GTCTC 1 cut(s) 109
BstMWI GCNNNNNNNGC 3 cut(s) 50, 91, 152
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 1 cut(s) 33
BstSLI GKGCMC 2 cut(s) 15, 636
BstV1I GCAGC 3 cut(s) 15, 267, 515
BsuRI GGCC 2 cut(s) 197, 365
BtsCI GGATG 2 cut(s) 142, 148
BtsIMutI CAGTG 2 cut(s) 515, 634
CciI TCATGA 1 cut(s) 127
CfoI GCGC 2 cut(s) 148, 526
CseI GACGC 2 cut(s) 33, 560
Csp6I GTAC 2 cut(s) 172, 475
CviAII CATG 5 cut(s) 128, 284, 361, 453, 478
CviQI GTAC 2 cut(s) 172, 475
DdeI CTNAG 6 cut(s) 54, 81, 95, 100, 345, 463
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 2 cut(s) 198, 565
Eco147I AGGCCT 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 198, 565
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 198, 565
FaeI CATG 5 cut(s) 131, 287, 364, 456, 481
FalI AAGNNNNNCTT 6 cut(s) 306, 338, 477, 509, 594, 626
FatI CATG 5 cut(s) 127, 283, 360, 452, 477
Fnu4HI GCNGC 3 cut(s) 29, 281, 504
FokI GGATG 2 cut(s) 149, 155
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 3 cut(s) 29, 281, 504
FspAI RTGCGCAY 1 cut(s) 147
FspBI CTAG 2 cut(s) 48, 468
FspI TGCGCA 1 cut(s) 147
GlaI GCGC 2 cut(s) 147, 525
GluI GCNGC 3 cut(s) 29, 281, 504
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 2 cut(s) 197, 365
HapII CCGG 2 cut(s) 119, 180
HgaI GACGC 2 cut(s) 33, 560
HhaI GCGC 2 cut(s) 148, 526
Hin1I GRCGYC 2 cut(s) 44, 552
Hin1II CATG 5 cut(s) 131, 287, 364, 456, 481
Hin6I GCGC 2 cut(s) 146, 524
HinP1I GCGC 2 cut(s) 146, 524
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HinfI GANTC 4 cut(s) 68, 122, 229, 535
HpaII CCGG 2 cut(s) 119, 180
HphI GGTGA 2 cut(s) 34, 155
Hpy166II GTNNAC 2 cut(s) 13, 550
Hpy188III TCNNGA 2 cut(s) 119, 128
Hpy8I GTNNAC 2 cut(s) 13, 550
HpyAV CCTTC 6 cut(s) 96, 118, 263, 332, 370, 483
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 5 cut(s) 13, 266, 283, 452, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 91, 152
HpyF3I CTNAG 6 cut(s) 54, 81, 95, 100, 345, 463
Hsp92I GRCGYC 2 cut(s) 44, 552
Hsp92II CATG 5 cut(s) 131, 287, 364, 456, 481
HspAI GCGC 2 cut(s) 146, 524
Kpn2I TCCGGA 1 cut(s) 118
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 7 cut(s) 20, 47, 93, 132, 193, 506, 521
Lsp1109I GCAGC 3 cut(s) 15, 267, 515
LweI GCATC 2 cut(s) 133, 439
MaeI CTAG 2 cut(s) 48, 468
MaeIII GTNAC 2 cut(s) 182, 392
MboII GAAGA 3 cut(s) 81, 326, 509
MhlI GDGCHC 3 cut(s) 15, 55, 636
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 4 cut(s) 234, 327, 439, 571
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 8 cut(s) 13, 18, 126, 133, 187, 260, 493, 581
Mox20I TGGCCA 1 cut(s) 365
Mph1103I ATGCAT 1 cut(s) 454
MroI TCCGGA 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 321
MscI TGGCCA 1 cut(s) 365
MseI TTAA 3 cut(s) 75, 575, 612
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 2 cut(s) 280, 532
MspI CCGG 2 cut(s) 119, 180
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 50, 91, 152
NlaIII CATG 5 cut(s) 131, 287, 364, 456, 481
NmuCI GTSAC 1 cut(s) 392
NsbI TGCGCA 1 cut(s) 147
NsiI ATGCAT 1 cut(s) 454
NspI RCATGY 1 cut(s) 481
NspV TTCGAA 2 cut(s) 238, 325
PagI TCATGA 1 cut(s) 127
PceI AGGCCT 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 3 cut(s) 122, 229, 535
PflMI CCANNNNNTGG 2 cut(s) 40, 372
PkrI GCNGC 3 cut(s) 30, 282, 505
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PvuII CAGCTG 2 cut(s) 280, 532
RsaI GTAC 2 cut(s) 173, 476
RsaNI GTAC 2 cut(s) 172, 475
SaqAI TTAA 3 cut(s) 75, 575, 612
SatI GCNGC 3 cut(s) 29, 281, 504
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 3 cut(s) 15, 55, 636
SetI ASST 9 cut(s) 24, 101, 252, 282, 399, 432, 469, 534, 567
SfaNI GCATC 2 cut(s) 133, 439
SfuI TTCGAA 2 cut(s) 238, 325
Sse9I AATT 4 cut(s) 234, 327, 439, 571
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 3 cut(s) 38, 406, 481
SspMI CTAG 2 cut(s) 48, 468
StuI AGGCCT 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 2 cut(s) 198, 565
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 3 cut(s) 238, 325, 433
TasI AATT 4 cut(s) 234, 327, 439, 571
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 3 cut(s) 122, 229, 535
Tru1I TTAA 3 cut(s) 75, 575, 612
Tru9I TTAA 3 cut(s) 75, 575, 612
TscAI CASTG 1 cut(s) 515
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 3 cut(s) 28, 280, 503
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 3 cut(s) 144, 327, 593
TspRI CASTG 1 cut(s) 515
Van91I CCANNNNNTGG 2 cut(s) 40, 372
VneI GTGCAC 1 cut(s) 11
XceI RCATGY 1 cut(s) 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 563
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 2 cut(s) 48, 468
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.