Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003255.1

Orthogroup ID

OG0018160

Physical Location & Seq

Genomic Coordinates Forward (+)

29694 .. 37488

Gene Structure 7795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgagagagcatgcagcttatctcgcagctgaaggagaagattgtgatgccctgcaaattcgtatttattttctgaggattttccagaatctaaattgtggtcattggacggtttcgtggctcgtggatggagcggaagtgtttcagatgaattttgattcggagagtatgactttaggggggttgcagaggttgacttttgaagtgttgggattctctaaaaacttccttcatgaaagttgtagagcgcgtcgatacgagatcgtctcctccatctggttgtccctgtggtgtcctctagcaccgattctcggtggtggtggcggtagaaggcggcgcagttgggtgatttcggacccggtcggaaatccttgttccgatgtcggcaaggcttcaagtcttcttggtactttacgaagtattttggaaggttgttttggggattggctgcctcgttcttggttgaagacgctgcgggagtttcgagacctccttctccaagctgacctgcatcgactcccgatctccttctccaagctgacctgcgtcgactccatggaaggtttggtgttgaaattgatattaaagattttggaacatggaagtatcagaggtcttagtatcttgtcttttgagcttgaactagttggttacacgattgctttggcatactgtcttcatggagggcttcccttctcagcttatggggaactggcctttcttttgatccaagctctaatattagttgccattatgtactattactcccaacctgtgagcatcaaaagatggatgacggcattactatattgtggtatagcaccaaccatattagcaggtcgaattgatcctgttctatttgaagctctatatgcatcacaacatgcaatttttctctttgccaagatcccgcagatatggcagaacttttctaacaaaagtacaggggagctcagcttcttaacgaactttatgaactttggaggttctatggtgagagttttcaccagcatccaagaacaagctccaaaaagtgttttgttgggctctgtacttggtgtggcaacaaatgccatcctcctgagtcagatacttatataccaaaagccaaaatctcgtgctgagaaggagaagaaaacggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

381

Amino Acids

42.68

Weight (kDa)

8.51

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	295 - 345	1e-12	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018160)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0130451
rosa_laevigata	RLG00000025951
rosa_multiflora	Rmu_co8430225.1_g000001 Rmu_sc0000082.1_g000088 Rmu_sc0000317.1_g000025 Rmu_sc0003255.1_g000010 Rmu_sc0006695.1_g000052
rosa_roxburghii	Rroxscaffold_7G00172130
rosa_samantha	Rh3BG007100 Rh5BG381200 Rh7AG410900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	516, 551, 827
AccBSI	CCGCTC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	549
AccII	CGCG	1 cut(s)	250
AciI	CCGC	5 cut(s)	134, 324, 334, 475, 911
AclWI	GGATC	3 cut(s)	721, 842, 901
AcsI	RAATTY	2 cut(s)	57, 151
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	4 cut(s)	409, 758, 943, 1053
AfiI	CCNNNNNNNGG	2 cut(s)	276, 311
AgsI	TTSAA	6 cut(s)	203, 396, 466, 574, 641, 863
AhlI	ACTAGT	1 cut(s)	643
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
Alw21I	GWGCWC	1 cut(s)	954
Alw26I	GTCTC	2 cut(s)	271, 480
AlwI	GGATC	3 cut(s)	721, 842, 901
AoxI	GGCC	1 cut(s)	714
ApeKI	GCWGC	4 cut(s)	14, 26, 448, 472
ApoI	RAATTY	2 cut(s)	57, 151
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	2 cut(s)	250, 339
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	358, 997, 1006
AvaII	GGWCC	1 cut(s)	355
BanII	GRGCYC	2 cut(s)	954, 1049
BauI	CACGAG	2 cut(s)	122, 1116
BbsI	GAAGAC	3 cut(s)	392, 473, 668
Bbv12I	GWGCWC	1 cut(s)	954
BbvI	GCAGC	4 cut(s)	26, 38, 435, 459
BccI	CCATC	4 cut(s)	122, 281, 783, 1082
BceAI	ACGGC	1 cut(s)	813
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	271, 480
BcuI	ACTAGT	1 cut(s)	643
BfaI	CTAG	2 cut(s)	299, 644
BfuAI	ACCTGC	3 cut(s)	516, 551, 827
BisI	GCNGC	5 cut(s)	15, 27, 335, 449, 473
BlpI	GCTNAGC	1 cut(s)	953
BlsI	GCNGC	5 cut(s)	16, 28, 336, 450, 474
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	5 cut(s)	37, 520, 789, 884, 1020
BoxI	GACNNNNGTC	1 cut(s)	545
BpiI	GAAGAC	3 cut(s)	392, 473, 668
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
Bpu1102I	GCTNAGC	1 cut(s)	953
BpuMI	CCSGG	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	555
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 749, 779
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 311
Bse1I	ACTGG	1 cut(s)	717
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	4 cut(s)	133, 798, 1011, 1074
BseLI	CCNNNNNNNGG	2 cut(s)	276, 311
BseMII	CTCAG	5 cut(s)	65, 711, 967, 1073, 1113
BseNI	ACTGG	1 cut(s)	717
BseRI	GAGGAG	1 cut(s)	259
BseXI	GCAGC	4 cut(s)	26, 38, 435, 459
Bsh1236I	CGCG	1 cut(s)	250
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	716
BsiEI	CGRYCG	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	954
BsiSI	CCGG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	276, 311
BsmAI	GTCTC	2 cut(s)	271, 480
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	716
Bso31I	GGTCTC	1 cut(s)	480
Bsp1286I	GDGCHC	2 cut(s)	954, 1049
Bsp143I	GATC	5 cut(s)	261, 522, 726, 847, 906
Bsp1720I	GCTNAGC	1 cut(s)	953
Bsp19I	CCATGG	1 cut(s)	555
BspACI	CCGC	5 cut(s)	134, 324, 334, 475, 911
BspANI	GGCC	1 cut(s)	716
BspCNI	CTCAG	5 cut(s)	66, 710, 966, 1074, 1114
BspFNI	CGCG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	357
BspMI	ACCTGC	3 cut(s)	516, 551, 827
BspPI	GGATC	3 cut(s)	721, 842, 901
BspTNI	GGTCTC	1 cut(s)	480
BsrBI	CCGCTC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	5 cut(s)	261, 522, 726, 847, 906
BssSI	CACGAG	2 cut(s)	122, 1116
BssT1I	CCWWGG	1 cut(s)	555
Bst2BI	CACGAG	2 cut(s)	122, 1116
Bst4CI	ACNGT	2 cut(s)	112, 674
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	6 cut(s)	74, 617, 697, 953, 1082, 1122
BstDSI	CCRYGG	1 cut(s)	555
BstF5I	GGATG	4 cut(s)	133, 798, 1011, 1074
BstFNI	CGCG	1 cut(s)	250
BstHHI	GCGC	2 cut(s)	250, 339
BstKTI	GATC	5 cut(s)	264, 525, 729, 850, 909
BstMAI	GTCTC	2 cut(s)	271, 480
BstMBI	GATC	5 cut(s)	261, 522, 726, 847, 906
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 872, 919, 1070
BstNSI	RCATGY	2 cut(s)	14, 887
BstPAI	GACNNNNGTC	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	4 cut(s)	26, 38, 435, 459
BstV2I	GAAGAC	3 cut(s)	392, 473, 668
BstX2I	RGATCY	1 cut(s)	906
BstYI	RGATCY	1 cut(s)	906
BsuRI	GGCC	1 cut(s)	716
BtgI	CCRYGG	1 cut(s)	555
BtsCI	GGATG	4 cut(s)	133, 798, 1011, 1074
BveI	ACCTGC	3 cut(s)	516, 551, 827
Cac8I	GCNNGC	1 cut(s)	12
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	2 cut(s)	250, 339
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	3 cut(s)	239, 478, 535
Csp6I	GTAC	4 cut(s)	408, 757, 942, 1052
CviAII	CATG	6 cut(s)	11, 233, 556, 599, 680, 884
CviQI	GTAC	4 cut(s)	408, 757, 942, 1052
DdeI	CTNAG	6 cut(s)	74, 617, 697, 953, 1082, 1122
DpnI	GATC	5 cut(s)	263, 524, 728, 849, 908
DpnII	GATC	5 cut(s)	261, 522, 726, 847, 906
Ecl136II	GAGCTC	1 cut(s)	952
Eco130I	CCWWGG	1 cut(s)	555
Eco24I	GRGCYC	2 cut(s)	954, 1049
Eco31I	GGTCTC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	952
Eco57I	CTGAAG	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	952
EcoT14I	CCWWGG	1 cut(s)	555
EcoT22I	ATGCAT	1 cut(s)	877
EcoT38I	GRGCYC	2 cut(s)	954, 1049
ErhI	CCWWGG	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	6 cut(s)	14, 236, 559, 602, 683, 887
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	6 cut(s)	10, 232, 555, 598, 679, 883
FauI	CCCGC	2 cut(s)	468, 918
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	5 cut(s)	15, 27, 335, 449, 473
FokI	GGATG	4 cut(s)	140, 805, 998, 1061
FriOI	GRGCYC	2 cut(s)	954, 1049
Fsp4HI	GCNGC	5 cut(s)	15, 27, 335, 449, 473
FspBI	CTAG	2 cut(s)	299, 644
GlaI	GCGC	2 cut(s)	249, 338
GluI	GCNGC	5 cut(s)	15, 27, 335, 449, 473
HaeIII	GGCC	1 cut(s)	716
HapII	CCGG	1 cut(s)	359
HgaI	GACGC	3 cut(s)	239, 478, 535
HhaI	GCGC	2 cut(s)	250, 339
Hin1II	CATG	6 cut(s)	14, 236, 559, 602, 683, 887
Hin6I	GCGC	2 cut(s)	248, 337
HinP1I	GCGC	2 cut(s)	248, 337
HincII	GTYRAC	2 cut(s)	195, 550
HindII	GTYRAC	2 cut(s)	195, 550
HinfI	GANTC	7 cut(s)	88, 158, 213, 307, 516, 551, 1084
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	3 cut(s)	358, 997, 1006
Hpy166II	GTNNAC	2 cut(s)	195, 550
Hpy188I	TCNGA	8 cut(s)	75, 147, 163, 355, 365, 379, 611, 1089
Hpy188III	TCNNGA	5 cut(s)	85, 233, 485, 520, 1081
Hpy8I	GTNNAC	2 cut(s)	195, 550
Hpy99I	CGWCG	2 cut(s)	255, 551
HpyAV	CCTTC	9 cut(s)	26, 239, 324, 422, 503, 538, 554, 703, 1120
HpyCH4III	ACNGT	2 cut(s)	112, 674
HpyCH4V	TGCA	6 cut(s)	14, 55, 187, 511, 875, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 872, 919, 1070
HpyF3I	CTNAG	6 cut(s)	74, 617, 697, 953, 1082, 1122
Hsp92II	CATG	6 cut(s)	14, 236, 559, 602, 683, 887
HspAI	GCGC	2 cut(s)	248, 337
Kzo9I	GATC	5 cut(s)	261, 522, 726, 847, 906
LmnI	GCTCC	3 cut(s)	131, 949, 1030
Lsp1109I	GCAGC	4 cut(s)	26, 38, 435, 459
LweI	GCATC	5 cut(s)	37, 520, 789, 884, 1020
MaeI	CTAG	2 cut(s)	299, 644
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	5 cut(s)	263, 524, 728, 849, 908
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	5 cut(s)	261, 522, 726, 847, 906
MboII	GAAGA	5 cut(s)	50, 392, 478, 668, 1144
MflI	RGATCY	1 cut(s)	906
MhlI	GDGCHC	2 cut(s)	954, 1049
MluCI	AATT	6 cut(s)	57, 94, 151, 575, 843, 888
MlyI	GAGTC	3 cut(s)	510, 545, 1093
MmeI	TCCRAC	1 cut(s)	343
Mph1103I	ATGCAT	1 cut(s)	877
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	2 cut(s)	584, 962
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	23, 872, 919, 1070
NciI	CCSGG	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	555
NdeII	GATC	5 cut(s)	261, 522, 726, 847, 906
NlaIII	CATG	6 cut(s)	14, 236, 559, 602, 683, 887
NlaIV	GGNNCC	1 cut(s)	357
NsiI	ATGCAT	1 cut(s)	877
NspI	RCATGY	2 cut(s)	14, 887
PaeI	GCATGC	1 cut(s)	14
PagI	TCATGA	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	4 cut(s)	88, 158, 213, 307
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	5 cut(s)	16, 28, 336, 450, 474
PleI	GAGTC	3 cut(s)	510, 545, 1092
PpsI	GAGTC	3 cut(s)	510, 545, 1092
PshAI	GACNNNNGTC	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	954
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	906
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	4 cut(s)	409, 758, 943, 1053
RsaNI	GTAC	4 cut(s)	408, 757, 942, 1052
SacI	GAGCTC	1 cut(s)	954
SalI	GTCGAC	1 cut(s)	548
SaqAI	TTAA	2 cut(s)	584, 962
SatI	GCNGC	5 cut(s)	15, 27, 335, 449, 473
Sau3AI	GATC	5 cut(s)	261, 522, 726, 847, 906
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	3 cut(s)	510, 545, 1093
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	2 cut(s)	954, 1049
SfaNI	GCATC	5 cut(s)	37, 520, 789, 884, 1020
SinI	GGWCC	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	643
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	6 cut(s)	57, 94, 151, 575, 843, 888
SsiI	CCGC	5 cut(s)	134, 324, 334, 475, 911
SspI	AATATT	1 cut(s)	741
SspMI	CTAG	2 cut(s)	299, 644
SstI	GAGCTC	1 cut(s)	954
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	2 cut(s)	112, 674
TaqI	TCGA	5 cut(s)	253, 484, 514, 549, 841
TasI	AATT	6 cut(s)	57, 94, 151, 575, 843, 888
TatI	WGTACW	3 cut(s)	756, 941, 1051
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	4 cut(s)	88, 158, 213, 307
Tru1I	TTAA	2 cut(s)	584, 962
Tru9I	TTAA	2 cut(s)	584, 962
TseI	GCWGC	4 cut(s)	14, 26, 448, 472
TspDTI	ATGAA	5 cut(s)	164, 221, 249, 668, 989
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	2 cut(s)	57, 151
XceI	RCATGY	2 cut(s)	14, 887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	2 cut(s)	299, 644
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.