Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003735.1

Orthogroup ID

OG0018662

Physical Location & Seq

Genomic Coordinates Reverse (-)

22700 .. 23398

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgatatttcagtgctttgcagaaaatgagaaacatggaggcctcactatccaaagcagccgtgctttcccagactgctctgctatggccacaaaactacgttctatgaccacaccgactgcagagtactttgctctcgagtccaaggaaaggcaatttcctaaccgacacaagttgcatgatacacagctctatcattgtgctgtcttctccgacaatgttctggcatgtgcagtggttgtgaactccactgtttccactgccatggaaccagagaaaattgttttccatgtggtgactgattcacccagttttccagcattgtccatcctcctggaaaaagccaccatccaagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

119

Amino Acids

13.22

Weight (kDa)

6.17

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018662)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000012126
rosa_multiflora	Rmu_co8382315.1_g000001 Rmu_sc0003735.1_g000006
rosa_roxburghii	Rroxscaffold_7G00176160
rosa_rugosa	Rorug06G0218600
rosa_samantha	Rh6AG330500 Rh6BG337300 Rh6CG343500 Rh6DG330800
rosa_wichuraiana	Rw6G028690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	87
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	40, 87
ApeKI	GCWGC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	297, 307
AvaI	CYCGRG	1 cut(s)	137
BalI	TGGCCA	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	335, 356
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
BmcAI	AGTACT	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	144, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	144, 264
BseGI	GGATG	2 cut(s)	327, 348
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	69
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	42, 89
BsiHKCI	CYCGRG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	150
BsnI	GGCC	2 cut(s)	42, 89
BsoBI	CYCGRG	1 cut(s)	137
Bsp19I	CCATGG	1 cut(s)	264
BspANI	GGCC	2 cut(s)	42, 89
BspLI	GGNNCC	1 cut(s)	270
BspMAI	CTGCAG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	144, 264
BssT1I	CCWWGG	2 cut(s)	144, 264
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	253
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	327, 348
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	333
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	199
BstXI	CCANNNNNNTGG	2 cut(s)	265, 334
BsuRI	GGCC	2 cut(s)	42, 89
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	327, 348
BtsI	GCAGTG	2 cut(s)	240, 258
BtsIMutI	CAGTG	4 cut(s)	17, 240, 249, 258
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	5 cut(s)	35, 179, 228, 265, 290
CviJI	RGCY	5 cut(s)	42, 60, 89, 190, 344
CviKI_1	RGCY	5 cut(s)	42, 60, 89, 190, 344
CviQI	GTAC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	144, 264
Eco147I	AGGCCT	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	144, 264
ErhI	CCWWGG	2 cut(s)	144, 264
FaeI	CATG	5 cut(s)	38, 182, 231, 268, 293
FaiI	YATR	7 cut(s)	36, 86, 107, 180, 229, 266, 291
FatI	CATG	5 cut(s)	34, 178, 227, 264, 289
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	2 cut(s)	314, 335
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	42, 89
Hin1II	CATG	5 cut(s)	38, 182, 231, 268, 293
HinfI	GANTC	2 cut(s)	140, 302
HphI	GGTGA	2 cut(s)	297, 307
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	4 cut(s)	20, 122, 178, 233
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	5 cut(s)	38, 182, 231, 268, 293
LpnPI	CCDG	7 cut(s)	84, 209, 285, 320, 322, 330, 347
Lsp1109I	GCAGC	1 cut(s)	69
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	1 cut(s)	295
MboII	GAAGA	1 cut(s)	199
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	2 cut(s)	155, 279
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	3 cut(s)	32, 53, 341
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	264
NlaIII	CATG	5 cut(s)	38, 182, 231, 268, 293
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	263
SatI	GCNGC	1 cut(s)	58
ScaI	AGTACT	1 cut(s)	128
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	335
SetI	ASST	2 cut(s)	103, 192
SfcI	CTRYAG	1 cut(s)	120
Sfr274I	CTCGAG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	155, 279
SseBI	AGGCCT	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	2 cut(s)	144, 264
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	138
TasI	AATT	2 cut(s)	155, 279
TatI	WGTACW	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	302
TscAI	CASTG	4 cut(s)	17, 240, 256, 265
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	295
TspRI	CASTG	4 cut(s)	17, 240, 256, 265
XceI	RCATGY	1 cut(s)	231
XhoI	CTCGAG	1 cut(s)	137
ZrmI	AGTACT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.