Rmu_sc0003776.1_g000013

PLATZ transcription factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003776.1
OG0011164
Physical Location & Seq
Forward (+)
95933 .. 97618
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ctggcgatcgagaaccaggacagtggtgtcagagaaatcaagcccaagagtaggagaatcatgggtgctggaggtcctgatgaggaagacaacaggtggccgccatggctgaagcctctgctcaaagagagcttctttgttcattgcaagttacatgcggattctcacaagagtgaatgcaatatgtactgcttggattgtatgaatggccctctctgctctctctgccttgcctaccacaaggaccatcgtgctattcagataaggaggtcttcataccatgatgtgattagagtgaatgagattcagaagcatctcgacatcaccggagtccagacctacattattaacagtgctcgagtcgttttcctgaatgagaggcctcagcctaggcccgggaaaggagtcaccaatacctgtgaagtctgtgagcgaagccttcttgattcgttcaggttctgctctcttggttgcaagattgtgggtacttcccagaatccactaaagaaaatgagagccaggctaatgggttccgactccgaggactcatacagcagcagcagcagccatggaaggttctccaacaacaaagttcagagcttctcgccatcaacaccacccccaacttccaacaactaccggacggccaagaggaggaagggaattccccacagggcaccaatgggaggactaatcatagaatactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

235

Amino Acids

26.58

Weight (kDa)

9.35

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 89 - 160 1.5e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32700 AT1G32700 AT4G17900 AT4G17900
fragaria_vesca FvH4_5g22220
malus_domestica MD06G1035500.v1.1 MD16G1273400.v1.1
prunus_persica Prupe.5G034300_v2.0.a1
pyrus_communis pycom06g02920 pycom16g24290
rosa_chinensis RchiOBHm_Chr7g0209901
rosa_laevigata RLG00000003079
rosa_multiflora Rmu_sc0003776.1_g000013
rosa_roxburghii Rroxscaffold_3G00248830
rosa_rugosa Rorug07G0117100
rosa_samantha Rh7AG251200 Rh7BG245500 Rh7CG267400 Rh7DG257200
rosa_wichuraiana Rw7G021270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 676
AciI CCGC 2 cut(s) 101, 158
AcoI YGGCCR 2 cut(s) 98, 645
AcsI RAATTY 1 cut(s) 663
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 2 cut(s) 188, 487
AfiI CCNNNNNNNGG 5 cut(s) 51, 395, 401, 654, 686
AjnI CCWGG 2 cut(s) 15, 518
AleI CACNNNNGTG 1 cut(s) 171
AluBI AGCT 2 cut(s) 132, 600
AluI AGCT 2 cut(s) 132, 600
Alw21I GWGCWC 1 cut(s) 358
AlwNI CAGNNNCTG 1 cut(s) 459
Ama87I CYCGRG 2 cut(s) 357, 395
AoxI GGCC 5 cut(s) 98, 208, 380, 392, 645
ApeKI GCWGC 4 cut(s) 555, 558, 561, 564
ApoI RAATTY 1 cut(s) 663
AspA2I CCTAGG 1 cut(s) 389
AspS9I GGNCC 4 cut(s) 74, 209, 244, 393
AsuC2I CCSGG 2 cut(s) 396, 397
AsuHPI GGTGA 2 cut(s) 316, 400
AvaI CYCGRG 2 cut(s) 357, 395
AvaII GGWCC 2 cut(s) 74, 244
AvrII CCTAGG 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 679
BanI GGYRCC 1 cut(s) 676
BbsI GAAGAC 2 cut(s) 93, 264
Bbv12I GWGCWC 1 cut(s) 358
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 4 cut(s) 567, 570, 573, 576
BccI CCATC 2 cut(s) 255, 616
BceAI ACGGC 1 cut(s) 660
BciT130I CCWGG 2 cut(s) 17, 520
BcnI CCSGG 2 cut(s) 396, 397
BfaI CTAG 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 106
BisI GCNGC 5 cut(s) 101, 556, 559, 562, 565
BlnI CCTAGG 1 cut(s) 389
BlsI GCNGC 5 cut(s) 102, 557, 560, 563, 566
Bme1390I CCNGG 4 cut(s) 17, 396, 397, 520
Bme18I GGWCC 2 cut(s) 74, 244
BmeT110I CYCGRG 2 cut(s) 357, 395
BmgT120I GGNCC 4 cut(s) 74, 209, 244, 393
BmiI GGNNCC 2 cut(s) 532, 678
BmrFI CCNGG 4 cut(s) 17, 396, 397, 520
BmsI GCATC 1 cut(s) 322
BpiI GAAGAC 2 cut(s) 93, 264
BpmI CTGGAG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 384
BpuMI CCSGG 2 cut(s) 396, 397
BsaJI CCNNGG 5 cut(s) 104, 389, 395, 540, 568
BsaWI WCCGGW 2 cut(s) 326, 639
Bsc4I CCNNNNNNNGG 5 cut(s) 51, 395, 401, 654, 686
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 2 cut(s) 17, 520
BseDI CCNNGG 5 cut(s) 104, 389, 395, 540, 568
BseLI CCNNNNNNNGG 5 cut(s) 51, 395, 401, 654, 686
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 667
BseSI GKGCMC 1 cut(s) 679
BseXI GCAGC 4 cut(s) 567, 570, 573, 576
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 5 cut(s) 100, 210, 382, 394, 647
BshNI GGYRCC 1 cut(s) 676
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 358
BsiHKCI CYCGRG 2 cut(s) 357, 395
BsiSI CCGG 3 cut(s) 327, 396, 640
BslI CCNNNNNNNGG 5 cut(s) 51, 395, 401, 654, 686
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 5 cut(s) 100, 210, 382, 394, 647
BsoBI CYCGRG 2 cut(s) 357, 395
Bsp1286I GDGCHC 2 cut(s) 358, 679
Bsp143I GATC 1 cut(s) 6
Bsp19I CCATGG 2 cut(s) 104, 568
BspACI CCGC 2 cut(s) 101, 158
BspANI GGCC 5 cut(s) 100, 210, 382, 394, 647
BspCNI CTCAG 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 532, 678
BspT107I GGYRCC 1 cut(s) 676
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 5 cut(s) 104, 389, 395, 540, 568
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 3 cut(s) 104, 389, 568
Bst2UI CCWGG 2 cut(s) 17, 520
Bst4CI ACNGT 2 cut(s) 23, 353
BstDEI CTNAG 1 cut(s) 384
BstDSI CCRYGG 2 cut(s) 104, 568
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 5 cut(s) 106, 216, 225, 561, 564
BstNI CCWGG 2 cut(s) 17, 520
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 4 cut(s) 15, 394, 395, 518
BstSLI GKGCMC 1 cut(s) 679
BstV1I GCAGC 4 cut(s) 567, 570, 573, 576
BstV2I GAAGAC 2 cut(s) 93, 264
BstXI CCANNNNNNTGG 2 cut(s) 23, 526
BsuRI GGCC 5 cut(s) 100, 210, 382, 394, 647
BtgI CCRYGG 2 cut(s) 104, 568
BtsIMutI CAGTG 2 cut(s) 28, 358
CaiI CAGNNNCTG 1 cut(s) 459
Cfr13I GGNCC 4 cut(s) 74, 209, 244, 393
Cfr9I CCCGGG 1 cut(s) 395
Csp6I GTAC 2 cut(s) 187, 486
CviAII CATG 5 cut(s) 61, 105, 155, 281, 569
CviQI GTAC 2 cut(s) 187, 486
DdeI CTNAG 1 cut(s) 384
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DrdI GACNNNNNNGTC 1 cut(s) 26
DseDI GACNNNNNNGTC 1 cut(s) 26
EaeI YGGCCR 2 cut(s) 98, 645
Eco130I CCWWGG 3 cut(s) 104, 389, 568
Eco147I AGGCCT 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 74, 244
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 2 cut(s) 357, 395
EcoO109I RGGNCCY 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 663
EcoRII CCWGG 2 cut(s) 15, 518
EcoT14I CCWWGG 3 cut(s) 104, 389, 568
ErhI CCWWGG 3 cut(s) 104, 389, 568
FaeI CATG 5 cut(s) 64, 108, 158, 284, 572
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FatI CATG 5 cut(s) 60, 104, 154, 280, 568
Fnu4HI GCNGC 5 cut(s) 101, 556, 559, 562, 565
Fsp4HI GCNGC 5 cut(s) 101, 556, 559, 562, 565
FspBI CTAG 1 cut(s) 390
GluI GCNGC 5 cut(s) 101, 556, 559, 562, 565
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 5 cut(s) 100, 210, 382, 394, 647
HapII CCGG 3 cut(s) 327, 396, 640
Hin1II CATG 5 cut(s) 64, 108, 158, 284, 572
HpaII CCGG 3 cut(s) 327, 396, 640
HphI GGTGA 2 cut(s) 316, 400
Hpy188I TCNGA 6 cut(s) 32, 261, 309, 535, 541, 597
Hpy188III TCNNGA 6 cut(s) 10, 77, 317, 334, 370, 443
HpyAV CCTTC 3 cut(s) 449, 567, 652
HpyCH4III ACNGT 2 cut(s) 23, 353
HpyCH4V TGCA 3 cut(s) 147, 180, 474
HpyF10VI GCNNNNNNNGC 5 cut(s) 106, 216, 225, 561, 564
HpyF3I CTNAG 1 cut(s) 384
Hsp92II CATG 5 cut(s) 64, 108, 158, 284, 572
Kzo9I GATC 1 cut(s) 6
Lsp1109I GCAGC 4 cut(s) 567, 570, 573, 576
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 150, 406
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 2 cut(s) 98, 264
MhlI GDGCHC 2 cut(s) 358, 679
MluCI AATT 1 cut(s) 663
MlyI GAGTC 5 cut(s) 339, 369, 414, 530, 539
MmeI TCCRAC 3 cut(s) 558, 606, 654
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 3 cut(s) 327, 396, 640
MspR9I CCNGG 4 cut(s) 17, 396, 397, 520
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 2 cut(s) 17, 520
MwoI GCNNNNNNNGC 5 cut(s) 106, 216, 225, 561, 564
NciI CCSGG 2 cut(s) 396, 397
NcoI CCATGG 2 cut(s) 104, 568
NdeII GATC 1 cut(s) 6
NlaIII CATG 5 cut(s) 64, 108, 158, 284, 572
NlaIV GGNNCC 2 cut(s) 532, 678
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 1 cut(s) 158
OliI CACNNNNGTG 1 cut(s) 171
PaeR7I CTCGAG 1 cut(s) 357
PceI AGGCCT 1 cut(s) 382
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 5 cut(s) 57, 161, 304, 446, 496
PkrI GCNGC 5 cut(s) 102, 557, 560, 563, 566
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 5 cut(s) 338, 368, 413, 530, 539
PpsI GAGTC 5 cut(s) 338, 368, 413, 530, 539
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 15, 518
PspGI CCWGG 2 cut(s) 15, 518
PspN4I GGNNCC 2 cut(s) 532, 678
PspPI GGNCC 4 cut(s) 74, 209, 244, 393
PspPPI RGGWCCY 1 cut(s) 74
PspXI VCTCGAGB 1 cut(s) 357
PstNI CAGNNNCTG 1 cut(s) 459
PvuI CGATCG 1 cut(s) 9
RsaI GTAC 2 cut(s) 188, 487
RsaNI GTAC 2 cut(s) 187, 486
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 5 cut(s) 101, 556, 559, 562, 565
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 4 cut(s) 74, 209, 244, 393
SchI GAGTC 5 cut(s) 339, 369, 414, 530, 539
ScrFI CCNGG 4 cut(s) 17, 396, 397, 520
SduI GDGCHC 2 cut(s) 358, 679
SetI ASST 9 cut(s) 76, 98, 134, 272, 341, 419, 458, 578, 602
SfaNI GCATC 1 cut(s) 322
Sfr274I CTCGAG 1 cut(s) 357
SinI GGWCC 2 cut(s) 74, 244
SlaI CTCGAG 1 cut(s) 357
SmaI CCCGGG 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 1 cut(s) 663
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 2 cut(s) 101, 158
SspMI CTAG 1 cut(s) 390
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 4 cut(s) 15, 394, 395, 518
StyI CCWWGG 3 cut(s) 104, 389, 568
TaaI ACNGT 2 cut(s) 23, 353
TaqI TCGA 3 cut(s) 9, 318, 358
TasI AATT 1 cut(s) 663
TatI WGTACW 1 cut(s) 186
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 5 cut(s) 57, 161, 304, 446, 496
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 2 cut(s) 28, 358
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 4 cut(s) 555, 558, 561, 564
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 3 cut(s) 131, 218, 264
TspMI CCCGGG 1 cut(s) 395
TspRI CASTG 2 cut(s) 28, 358
VpaK11BI GGWCC 2 cut(s) 74, 244
XapI RAATTY 1 cut(s) 663
XceI RCATGY 1 cut(s) 158
XhoI CTCGAG 1 cut(s) 357
XmaI CCCGGG 1 cut(s) 395
XmaJI CCTAGG 1 cut(s) 389
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.