Rmu_sc0003798.1_g000004

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003798.1
OG0018354
Physical Location & Seq
Reverse (-)
7400 .. 8128
729 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
atgactcttaacactgcatctttccaaaaggacactgcagctttcatccaaaggactgagattcagtttcaaaagcaagatgccttagctcagcaacatggacaagctatcaagaacttggaaaggaaagttgggcaacttgcaacggtgatgcaaactagacctcctggcaccctccctagcacaaacattcaaaatcgtaaggatgggggcatagctgagctcaattcaatcactttaaggagtggtagacaattggaagaagtctctgggcaccaaagaacatccaagaaagatcaagaagagaaggaggagcaaagaaatacgaaggaggaaaagaaaatcatcgctggtgaaaaaaagatcgatctcacgggggctgatcaaaatgttcatgttttttcccctccaaaggtaaaagatcctactccttctaagttggttacttcatgtattccttttcctcgcaagttcatgagctctaagaaagaacaagaagagaaggatgtcttggaaacttttcgtaaagtccaagtgaacatccctcttctagatgccatcaagcaaggacctcagtatgccaaattccttaaggagctatgcaccaaaaagaaaaagttcaatgggaatgagatagtggcccttagtgaagaagtctcagctgtcttcaaagaaagtttccacctaaacttaaggatcccggacgcttcacgattccatgcaccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag rve

Protein Analysis

242

Amino Acids

27.36

Weight (kDa)

9.52

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 170, 273
AccI GTMKAC 1 cut(s) 250
AclWI GGATC 3 cut(s) 416, 691, 704
AcsI RAATTY 1 cut(s) 584
AfiI CCNNNNNNNGG 1 cut(s) 412
AflII CTTAAG 2 cut(s) 590, 691
AgsI TTSAA 5 cut(s) 71, 194, 231, 622, 670
AjnI CCWGG 1 cut(s) 166
AjuI GAANNNNNNNTTGG 4 cut(s) 114, 146, 494, 526
AluBI AGCT 8 cut(s) 41, 89, 107, 218, 223, 480, 598, 662
AluI AGCT 8 cut(s) 41, 89, 107, 218, 223, 480, 598, 662
Alw21I GWGCWC 2 cut(s) 225, 482
Alw26I GTCTC 2 cut(s) 271, 661
AlwI GGATC 3 cut(s) 416, 691, 704
AoxI GGCC 1 cut(s) 639
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 584
Asp700I GAANNNNTTC 2 cut(s) 519, 617
AspS9I GGNCC 2 cut(s) 569, 640
AsuC2I CCSGG 1 cut(s) 701
AsuHPI GGTGA 2 cut(s) 160, 365
AvaII GGWCC 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 276
BamHI GGATCC 1 cut(s) 696
BanI GGYRCC 2 cut(s) 170, 273
BanII GRGCYC 2 cut(s) 225, 482
BbsI GAAGAC 1 cut(s) 658
Bbv12I GWGCWC 2 cut(s) 225, 482
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 200, 566
BciT130I CCWGG 1 cut(s) 168
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 701
BcoDI GTCTC 2 cut(s) 271, 661
BfaI CTAG 3 cut(s) 159, 180, 551
BfmI CTRYAG 1 cut(s) 36
BfrI CTTAAG 2 cut(s) 590, 691
BisI GCNGC 1 cut(s) 39
BlpI GCTNAGC 2 cut(s) 90, 219
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 2 cut(s) 168, 701
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 2 cut(s) 569, 640
BmiI GGNNCC 3 cut(s) 172, 275, 698
BmrFI CCNGG 2 cut(s) 168, 701
BmsI GCATC 4 cut(s) 26, 70, 141, 544
BpiI GAAGAC 1 cut(s) 658
Bpu10I CCTNAGC 1 cut(s) 85
Bpu1102I GCTNAGC 2 cut(s) 90, 219
BpuMI CCSGG 1 cut(s) 701
Bsa29I ATCGAT 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 366
BseGI GGATG 5 cut(s) 45, 211, 284, 511, 540
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMII CTCAG 5 cut(s) 48, 104, 210, 587, 672
BseRI GAGGAG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 276
BseXI GCAGC 1 cut(s) 50
BshFI GGCC 1 cut(s) 641
BshNI GGYRCC 2 cut(s) 170, 273
BshVI ATCGAT 1 cut(s) 366
BsiHKAI GWGCWC 2 cut(s) 225, 482
BsiSI CCGG 1 cut(s) 701
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 271, 661
BsnI GGCC 1 cut(s) 641
Bsp1286I GDGCHC 3 cut(s) 225, 276, 482
Bsp143I GATC 6 cut(s) 295, 363, 367, 382, 421, 696
Bsp1720I GCTNAGC 2 cut(s) 90, 219
BspANI GGCC 1 cut(s) 641
BspCNI CTCAG 5 cut(s) 49, 103, 211, 586, 671
BspDI ATCGAT 1 cut(s) 366
BspHI TCATGA 1 cut(s) 474
BspLI GGNNCC 3 cut(s) 172, 275, 698
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 3 cut(s) 416, 691, 704
BspT107I GGYRCC 2 cut(s) 170, 273
BspTI CTTAAG 2 cut(s) 590, 691
BssMI GATC 6 cut(s) 295, 363, 367, 382, 421, 696
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 3 cut(s) 297, 492, 552
BstAFI CTTAAG 2 cut(s) 590, 691
BstDEI CTNAG 9 cut(s) 57, 85, 90, 219, 435, 483, 573, 644, 658
BstF5I GGATG 5 cut(s) 45, 211, 284, 511, 540
BstKTI GATC 6 cut(s) 298, 366, 370, 385, 424, 699
BstMAI GTCTC 2 cut(s) 271, 661
BstMBI GATC 6 cut(s) 295, 363, 367, 382, 421, 696
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 2 cut(s) 166, 699
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 658
BstX2I RGATCY 2 cut(s) 421, 696
BstYI RGATCY 2 cut(s) 421, 696
Bsu15I ATCGAT 1 cut(s) 366
BsuRI GGCC 1 cut(s) 641
BsuTUI ATCGAT 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 331
BtsCI GGATG 5 cut(s) 45, 211, 284, 511, 540
BtsI GCAGTG 2 cut(s) 12, 33
BtsIMutI CAGTG 2 cut(s) 12, 33
CciI TCATGA 1 cut(s) 474
Cfr13I GGNCC 2 cut(s) 569, 640
ClaI ATCGAT 1 cut(s) 366
CseI GACGC 1 cut(s) 713
CviAII CATG 5 cut(s) 98, 395, 450, 475, 719
DdeI CTNAG 9 cut(s) 57, 85, 90, 219, 435, 483, 573, 644, 658
DpnI GATC 6 cut(s) 297, 365, 369, 384, 423, 698
DpnII GATC 6 cut(s) 295, 363, 367, 382, 421, 696
Eam1104I CTCTTC 3 cut(s) 297, 492, 552
EarI CTCTTC 3 cut(s) 297, 492, 552
Ecl136II GAGCTC 2 cut(s) 223, 480
Eco24I GRGCYC 2 cut(s) 225, 482
Eco47I GGWCC 1 cut(s) 569
Eco53kI GAGCTC 2 cut(s) 223, 480
EcoICRI GAGCTC 2 cut(s) 223, 480
EcoO109I RGGNCCY 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 166
EcoT38I GRGCYC 2 cut(s) 225, 482
FaeI CATG 5 cut(s) 101, 398, 453, 478, 722
FaiI YATR 9 cut(s) 99, 215, 396, 451, 476, 579, 601, 720, 727
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FatI CATG 5 cut(s) 97, 394, 449, 474, 718
FbaI TGATCA 1 cut(s) 382
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 5 cut(s) 32, 218, 271, 518, 527
FriOI GRGCYC 2 cut(s) 225, 482
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 3 cut(s) 159, 180, 551
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 641
HapII CCGG 1 cut(s) 701
HgaI GACGC 1 cut(s) 713
Hin1II CATG 5 cut(s) 101, 398, 453, 478, 722
HinfI GANTC 3 cut(s) 4, 61, 714
HpaII CCGG 1 cut(s) 701
HphI GGTGA 2 cut(s) 160, 365
Hpy166II GTNNAC 2 cut(s) 251, 538
Hpy188III TCNNGA 5 cut(s) 112, 299, 475, 551, 711
Hpy8I GTNNAC 2 cut(s) 251, 538
HpyAV CCTTC 4 cut(s) 301, 322, 441, 496
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 6 cut(s) 17, 38, 143, 154, 603, 722
HpyF3I CTNAG 9 cut(s) 57, 85, 90, 219, 435, 483, 573, 644, 658
Hsp92II CATG 5 cut(s) 101, 398, 453, 478, 722
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 6 cut(s) 295, 363, 367, 382, 421, 696
LmnI GCTCC 2 cut(s) 313, 595
LpnPI CCDG 5 cut(s) 153, 180, 255, 336, 714
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 4 cut(s) 26, 70, 141, 544
MaeI CTAG 3 cut(s) 159, 180, 551
MaeIII GTNAC 1 cut(s) 442
MalI GATC 6 cut(s) 297, 365, 369, 384, 423, 698
MboI GATC 6 cut(s) 295, 363, 367, 382, 421, 696
MboII GAAGA 6 cut(s) 272, 314, 509, 539, 658, 662
MfeI CAATTG 1 cut(s) 254
MflI RGATCY 2 cut(s) 421, 696
MhlI GDGCHC 3 cut(s) 225, 276, 482
MluCI AATT 3 cut(s) 226, 254, 584
MnlI CCTC 8 cut(s) 174, 185, 304, 325, 417, 474, 555, 582
MroXI GAANNNNTTC 2 cut(s) 519, 617
MseI TTAA 4 cut(s) 9, 239, 591, 692
MspA1I CMGCKG 1 cut(s) 662
MspCI CTTAAG 2 cut(s) 590, 691
MspI CCGG 1 cut(s) 701
MspR9I CCNGG 2 cut(s) 168, 701
MunI CAATTG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 168
NciI CCSGG 1 cut(s) 701
NdeII GATC 6 cut(s) 295, 363, 367, 382, 421, 696
NlaIII CATG 5 cut(s) 101, 398, 453, 478, 722
NlaIV GGNNCC 3 cut(s) 172, 275, 698
PagI TCATGA 1 cut(s) 474
PdmI GAANNNNTTC 2 cut(s) 519, 617
PfeI GAWTC 2 cut(s) 61, 714
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 569
Psp124BI GAGCTC 2 cut(s) 225, 482
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 3 cut(s) 172, 275, 698
PspPI GGNCC 2 cut(s) 569, 640
PspPPI RGGWCCY 1 cut(s) 569
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 2 cut(s) 421, 696
PvuII CAGCTG 1 cut(s) 662
SacI GAGCTC 2 cut(s) 225, 482
SaqAI TTAA 4 cut(s) 9, 239, 591, 692
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 6 cut(s) 295, 363, 367, 382, 421, 696
Sau96I GGNCC 2 cut(s) 569, 640
ScrFI CCNGG 2 cut(s) 168, 701
SduI GDGCHC 3 cut(s) 225, 276, 482
SfaNI GCATC 4 cut(s) 26, 70, 141, 544
SfcI CTRYAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 569
SmlI CTYRAG 2 cut(s) 590, 691
SmoI CTYRAG 2 cut(s) 590, 691
Sse9I AATT 3 cut(s) 226, 254, 584
SspMI CTAG 3 cut(s) 159, 180, 551
SstI GAGCTC 2 cut(s) 225, 482
StyD4I CCNGG 2 cut(s) 166, 699
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 366
TasI AATT 3 cut(s) 226, 254, 584
TfiI GAWTC 2 cut(s) 61, 714
Tru1I TTAA 4 cut(s) 9, 239, 591, 692
Tru9I TTAA 4 cut(s) 9, 239, 591, 692
TscAI CASTG 2 cut(s) 19, 40
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 4 cut(s) 34, 383, 438, 463
TspRI CASTG 2 cut(s) 19, 40
Vha464I CTTAAG 2 cut(s) 590, 691
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 1 cut(s) 584
XbaI TCTAGA 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 250
XmnI GAANNNNTTC 2 cut(s) 519, 617
XspI CTAG 3 cut(s) 159, 180, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.