Rmu_sc0003880.1_g000035

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003880.1
OG0006797
Physical Location & Seq
Forward (+)
171252 .. 178992
7741 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1275 bp
atgcgtttttgcaactggaggagtcctgaaagacttcacttggatgcaatatttgcaacagatggaattttgtataagaatttgcgaagaggaaggggatgtttctccaaaacaacagaagcttctagttctttttcaaatggtactggagaaagtccatacatacccgttaatacaaaaccaactgatgcacgtataatttatgctgtagctcctgccatgggtcataaccaggaggctcatccagaatctcactttagagttcctgctatagtgcaggctcttgacaaattggagctcacaccaaagttccgtggctcgaaggttattgaacttcaaaactttaggccagcatcagtggatgacatcacaagtgttcatacccaatcatatgtatcaggccttgaaaaggctatggatcaagcctcaaaagacggccttatttttatagaaggctctggaccaacatatgcaactgttgagacattccaggagtcactgattgcagctggagcaggaattgccttaattgattcagtggtagcagagtcaaagaacagcagggatccacctacaggttttgctttaataagacctccaggacaccatgcaattccaaagggtccgatggggttttgtgtgtttggaaatattgctattgcagctcgttatgctcagcgtgcacatggcttgaagcgtgtctttataattgattttgatgttcaccacgggaatgggacaaatgatgctttctatgaggatccagatatattcttcctttcaactcaccaagacgggagttaccctggtactggaaaatttgatgagataggtcgcggagatggcgaaggaacgacactaaatcttcctctaccaggtggctcaggtgatactgccatgagaactgtgtttgatgaagtaattgtgccatgtgctcagaggtttaagccagatattattctcgtctctgctgggtatgatgcgcatgcattggatccacttgcaagtttgcaatttacaactggaacatattacatgctagcatctagcattcaacaacttgccaaggatatttgtggtggtcgatgcgtgtttttcttagaaggaggatacaatctcgactctctttcatattccgttgcagattcatttcgtgcttttcttaaagagccaagtttggcgtctacgtttgacaaccctgccatgttgtatgaagagccatcaatgaaggttaagcaggcaattcagagggttaaacatttacattctttgtga

Protein Analysis

424

Amino Acids

46.18

Weight (kDa)

5.96

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 81 - 385 1.5e-90 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 707
Acc16I TGCGCA 1 cut(s) 984
AccI GTMKAC 1 cut(s) 1184
AccII CGCG 1 cut(s) 837
AciI CCGC 1 cut(s) 837
AclWI GGATC 7 cut(s) 426, 560, 573, 755, 768, 989, 1002
AcsI RAATTY 3 cut(s) 66, 79, 818
AcyI GRCGYC 1 cut(s) 1181
AfaI GTAC 2 cut(s) 145, 811
AfiI CCNNNNNNNGG 5 cut(s) 221, 409, 575, 812, 875
AgsI TTSAA 7 cut(s) 138, 332, 338, 407, 694, 783, 1055
AjnI CCWGG 5 cut(s) 231, 489, 598, 805, 874
AluBI AGCT 5 cut(s) 122, 212, 298, 509, 665
AluI AGCT 5 cut(s) 122, 212, 298, 509, 665
Alw21I GWGCWC 3 cut(s) 300, 685, 937
Alw26I GTCTC 2 cut(s) 476, 970
Alw44I GTGCAC 1 cut(s) 681
AlwI GGATC 7 cut(s) 426, 560, 573, 755, 768, 989, 1002
AoxI GGCC 3 cut(s) 347, 400, 436
ApaLI GTGCAC 1 cut(s) 681
ApeKI GCWGC 2 cut(s) 506, 662
ApoI RAATTY 3 cut(s) 66, 79, 818
Asp700I GAANNNNTTC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 985
AspS9I GGNCC 2 cut(s) 461, 623
AsuHPI GGTGA 3 cut(s) 716, 779, 899
AsuNHI GCTAGC 1 cut(s) 1039
AvaII GGWCC 2 cut(s) 461, 623
BaeGI GKGCMC 1 cut(s) 685
BamHI GGATCC 3 cut(s) 565, 760, 994
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 3 cut(s) 300, 685, 937
BbvI GCAGC 2 cut(s) 518, 674
BccI CCATC 4 cut(s) 56, 622, 836, 1228
BceAI ACGGC 1 cut(s) 451
BciT130I CCWGG 5 cut(s) 233, 491, 600, 807, 876
BciVI GTATCC 1 cut(s) 1103
BcoDI GTCTC 2 cut(s) 476, 970
BfaI CTAG 3 cut(s) 126, 1040, 1047
BfmI CTRYAG 3 cut(s) 207, 270, 573
BfuI GTATCC 1 cut(s) 1103
BisI GCNGC 2 cut(s) 507, 663
BlpI GCTNAGC 1 cut(s) 675
BlsI GCNGC 2 cut(s) 508, 664
Bme1390I CCNGG 5 cut(s) 233, 491, 600, 807, 876
Bme18I GGWCC 2 cut(s) 461, 623
BmgT120I GGNCC 2 cut(s) 461, 623
BmiI GGNNCC 4 cut(s) 567, 624, 762, 996
BmrFI CCNGG 5 cut(s) 233, 491, 600, 807, 876
BmsI GCATC 7 cut(s) 34, 178, 362, 736, 970, 1052, 1076
BmtI GCTAGC 1 cut(s) 1043
BpmI CTGGAG 4 cut(s) 37, 168, 531, 582
Bpu10I CCTNAGC 1 cut(s) 883
Bpu1102I GCTNAGC 1 cut(s) 675
BsaAI YACGTR 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 1181
BsaJI CCNNGG 5 cut(s) 219, 313, 727, 805, 1065
Bsc4I CCNNNNNNNGG 5 cut(s) 221, 409, 575, 812, 875
Bse1I ACTGG 4 cut(s) 20, 151, 817, 1027
BseBI CCWGG 5 cut(s) 233, 491, 600, 807, 876
BseDI CCNNGG 5 cut(s) 219, 313, 727, 805, 1065
BseGI GGATG 4 cut(s) 49, 104, 241, 367
BseLI CCNNNNNNNGG 5 cut(s) 221, 409, 575, 812, 875
BseMII CTCAG 3 cut(s) 689, 897, 950
BseNI ACTGG 4 cut(s) 20, 151, 817, 1027
BseRI GAGGAG 1 cut(s) 34
BseSI GKGCMC 1 cut(s) 685
BseXI GCAGC 2 cut(s) 518, 674
BseYI CCCAGC 1 cut(s) 971
BsgI GTGCAG 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 837
BshFI GGCC 3 cut(s) 349, 402, 438
BsiHKAI GWGCWC 3 cut(s) 300, 685, 937
BslFI GGGAC 1 cut(s) 751
BslI CCNNNNNNNGG 5 cut(s) 221, 409, 575, 812, 875
BsmAI GTCTC 2 cut(s) 476, 970
BsmBI CGTCTC 1 cut(s) 970
BsmFI GGGAC 1 cut(s) 751
BsmI GAATGC 1 cut(s) 1050
BsnI GGCC 3 cut(s) 349, 402, 438
Bsp1286I GDGCHC 3 cut(s) 300, 685, 937
Bsp143I GATC 4 cut(s) 418, 565, 760, 994
Bsp1720I GCTNAGC 1 cut(s) 675
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 1 cut(s) 837
BspANI GGCC 3 cut(s) 349, 402, 438
BspCNI CTCAG 3 cut(s) 688, 896, 949
BspFNI CGCG 1 cut(s) 837
BspLI GGNNCC 4 cut(s) 567, 624, 762, 996
BspOI GCTAGC 1 cut(s) 1043
BspPI GGATC 7 cut(s) 426, 560, 573, 755, 768, 989, 1002
BspQI GCTCTTC 1 cut(s) 1209
BsrI ACTGG 4 cut(s) 20, 151, 817, 1027
BssECI CCNNGG 5 cut(s) 219, 313, 727, 805, 1065
BssMI GATC 4 cut(s) 418, 565, 760, 994
BssNI GRCGYC 1 cut(s) 1181
BssT1I CCWWGG 2 cut(s) 219, 1065
Bst2UI CCWGG 5 cut(s) 233, 491, 600, 807, 876
Bst4CI ACNGT 2 cut(s) 478, 907
Bst6I CTCTTC 2 cut(s) 82, 1209
BstACI GRCGYC 1 cut(s) 1181
BstAPI GCANNNNNTGC 2 cut(s) 53, 521
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 6 cut(s) 279, 351, 681, 987, 1041, 1239
BstDEI CTNAG 4 cut(s) 675, 883, 936, 1099
BstDSI CCRYGG 3 cut(s) 219, 313, 727
BstENI CCTNNNNNAGG 2 cut(s) 407, 873
BstF5I GGATG 4 cut(s) 49, 104, 241, 367
BstFNI CGCG 1 cut(s) 837
BstHHI GCGC 1 cut(s) 985
BstKTI GATC 4 cut(s) 421, 568, 763, 997
BstMAI GTCTC 2 cut(s) 476, 970
BstMBI GATC 4 cut(s) 418, 565, 760, 994
BstMWI GCNNNNNNNGC 7 cut(s) 53, 512, 521, 662, 671, 680, 843
BstNI CCWGG 5 cut(s) 233, 491, 600, 807, 876
BstNSI RCATGY 2 cut(s) 989, 1039
BstSCI CCNGG 5 cut(s) 231, 489, 598, 805, 874
BstSFI CTRYAG 3 cut(s) 207, 270, 573
BstSLI GKGCMC 1 cut(s) 685
BstUI CGCG 1 cut(s) 837
BstV1I GCAGC 2 cut(s) 518, 674
BstX2I RGATCY 3 cut(s) 565, 760, 994
BstXI CCANNNNNNTGG 1 cut(s) 734
BstYI RGATCY 3 cut(s) 565, 760, 994
BsuI GTATCC 1 cut(s) 1103
BsuRI GGCC 3 cut(s) 349, 402, 438
BtgI CCRYGG 3 cut(s) 219, 313, 727
BtsCI GGATG 4 cut(s) 49, 104, 241, 367
BtsIMutI CAGTG 3 cut(s) 363, 497, 543
Cac8I GCNNGC 6 cut(s) 279, 351, 681, 987, 1041, 1239
CfoI GCGC 1 cut(s) 985
Cfr13I GGNCC 2 cut(s) 461, 623
CseI GACGC 1 cut(s) 1170
CsiI ACCWGGT 1 cut(s) 874
Csp6I GTAC 2 cut(s) 144, 810
CviAII CATG 8 cut(s) 220, 608, 686, 898, 930, 986, 1036, 1204
CviQI GTAC 2 cut(s) 144, 810
DdeI CTNAG 4 cut(s) 675, 883, 936, 1099
DpnI GATC 4 cut(s) 420, 567, 762, 996
DpnII GATC 4 cut(s) 418, 565, 760, 994
Eam1104I CTCTTC 2 cut(s) 82, 1209
EarI CTCTTC 2 cut(s) 82, 1209
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 219, 1065
Eco147I AGGCCT 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 461, 623
Eco53kI GAGCTC 1 cut(s) 298
EcoICRI GAGCTC 1 cut(s) 298
EcoNI CCTNNNNNAGG 2 cut(s) 407, 873
EcoRII CCWGG 5 cut(s) 231, 489, 598, 805, 874
EcoT14I CCWWGG 2 cut(s) 219, 1065
EcoT22I ATGCAT 1 cut(s) 991
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 2 cut(s) 219, 1065
Esp3I CGTCTC 1 cut(s) 970
FaeI CATG 8 cut(s) 223, 611, 689, 901, 933, 989, 1039, 1207
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 686, 718
FaqI GGGAC 1 cut(s) 751
FatI CATG 8 cut(s) 219, 607, 685, 897, 929, 985, 1035, 1203
FauNDI CATATG 2 cut(s) 391, 469
FblI GTMKAC 1 cut(s) 1184
Fnu4HI GCNGC 2 cut(s) 507, 663
FokI GGATG 4 cut(s) 56, 111, 228, 374
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 2 cut(s) 507, 663
FspAI RTGCGCAY 1 cut(s) 984
FspBI CTAG 3 cut(s) 126, 1040, 1047
FspI TGCGCA 1 cut(s) 984
GlaI GCGC 1 cut(s) 984
GluI GCNGC 2 cut(s) 507, 663
GsaI CCCAGC 1 cut(s) 975
GsuI CTGGAG 4 cut(s) 37, 168, 531, 582
HaeIII GGCC 3 cut(s) 349, 402, 438
HgaI GACGC 1 cut(s) 1170
HhaI GCGC 1 cut(s) 985
Hin1I GRCGYC 1 cut(s) 1181
Hin1II CATG 8 cut(s) 223, 611, 689, 901, 933, 989, 1039, 1207
Hin6I GCGC 1 cut(s) 983
HinP1I GCGC 1 cut(s) 983
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 7 cut(s) 22, 248, 494, 533, 548, 1121, 1145
HphI GGTGA 3 cut(s) 716, 779, 899
Hpy166II GTNNAC 3 cut(s) 683, 724, 1185
Hpy188I TCNGA 3 cut(s) 627, 939, 1248
Hpy188III TCNNGA 6 cut(s) 26, 245, 284, 459, 764, 1118
Hpy8I GTNNAC 3 cut(s) 683, 724, 1185
HpyAV CCTTC 6 cut(s) 87, 316, 446, 842, 1097, 1222
HpyCH4III ACNGT 2 cut(s) 478, 907
HpyCH4IV ACGT 2 cut(s) 193, 1187
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 512, 521, 662, 671, 680, 843
HpyF3I CTNAG 4 cut(s) 675, 883, 936, 1099
HpySE526I ACGT 2 cut(s) 193, 1187
Hsp92I GRCGYC 1 cut(s) 1181
Hsp92II CATG 8 cut(s) 223, 611, 689, 901, 933, 989, 1039, 1207
HspAI GCGC 1 cut(s) 983
Kzo9I GATC 4 cut(s) 418, 565, 760, 994
LguI GCTCTTC 1 cut(s) 1209
LmnI GCTCC 3 cut(s) 217, 295, 512
Lsp1109I GCAGC 2 cut(s) 518, 674
LweI GCATC 7 cut(s) 34, 178, 362, 736, 970, 1052, 1076
MabI ACCWGGT 1 cut(s) 874
MaeI CTAG 3 cut(s) 126, 1040, 1047
MaeII ACGT 2 cut(s) 193, 1187
MaeIII GTNAC 2 cut(s) 495, 800
MalI GATC 4 cut(s) 420, 567, 762, 996
MboI GATC 4 cut(s) 418, 565, 760, 994
MboII GAAGA 4 cut(s) 99, 766, 857, 1226
MflI RGATCY 3 cut(s) 565, 760, 994
MhlI GDGCHC 3 cut(s) 300, 685, 937
MlyI GAGTC 4 cut(s) 31, 503, 557, 1115
Mph1103I ATGCAT 1 cut(s) 991
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 7 cut(s) 171, 527, 587, 945, 1164, 1233, 1254
MslI CAYNNNNRTG 2 cut(s) 42, 732
MspA1I CMGCKG 1 cut(s) 509
MspR9I CCNGG 5 cut(s) 233, 491, 600, 807, 876
Mva1269I GAATGC 1 cut(s) 1050
MvaI CCWGG 5 cut(s) 233, 491, 600, 807, 876
MvnI CGCG 1 cut(s) 837
MwoI GCNNNNNNNGC 7 cut(s) 53, 512, 521, 662, 671, 680, 843
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 2 cut(s) 391, 469
NdeII GATC 4 cut(s) 418, 565, 760, 994
NheI GCTAGC 1 cut(s) 1039
NlaIII CATG 8 cut(s) 223, 611, 689, 901, 933, 989, 1039, 1207
NlaIV GGNNCC 4 cut(s) 567, 624, 762, 996
NmuCI GTSAC 1 cut(s) 495
NsbI TGCGCA 1 cut(s) 984
NsiI ATGCAT 1 cut(s) 991
NspI RCATGY 2 cut(s) 989, 1039
PaeI GCATGC 1 cut(s) 989
PceI AGGCCT 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 1209
PctI GAATGC 1 cut(s) 1050
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 3 cut(s) 248, 533, 1145
PfoI TCCNGGA 2 cut(s) 489, 598
PkrI GCNGC 2 cut(s) 508, 664
PleI GAGTC 4 cut(s) 30, 502, 556, 1115
PpsI GAGTC 4 cut(s) 30, 502, 556, 1115
Ppu21I YACGTR 1 cut(s) 194
PsiI TTATAA 1 cut(s) 707
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 5 cut(s) 231, 489, 598, 805, 874
PspFI CCCAGC 1 cut(s) 971
PspGI CCWGG 5 cut(s) 231, 489, 598, 805, 874
PspN4I GGNNCC 4 cut(s) 567, 624, 762, 996
PspPI GGNCC 2 cut(s) 461, 623
PsuI RGATCY 3 cut(s) 565, 760, 994
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 2 cut(s) 145, 811
RsaNI GTAC 2 cut(s) 144, 810
RseI CAYNNNNRTG 2 cut(s) 42, 732
SacI GAGCTC 1 cut(s) 300
SapI GCTCTTC 1 cut(s) 1209
SaqAI TTAA 7 cut(s) 171, 527, 587, 945, 1164, 1233, 1254
SatI GCNGC 2 cut(s) 507, 663
Sau3AI GATC 4 cut(s) 418, 565, 760, 994
Sau96I GGNCC 2 cut(s) 461, 623
SchI GAGTC 4 cut(s) 31, 503, 557, 1115
ScrFI CCNGG 5 cut(s) 233, 491, 600, 807, 876
SduI GDGCHC 3 cut(s) 300, 685, 937
SexAI ACCWGGT 1 cut(s) 874
SfaNI GCATC 7 cut(s) 34, 178, 362, 736, 970, 1052, 1076
SfcI CTRYAG 3 cut(s) 207, 270, 573
SinI GGWCC 2 cut(s) 461, 623
SmiMI CAYNNNNRTG 2 cut(s) 42, 732
SphI GCATGC 1 cut(s) 989
SseBI AGGCCT 1 cut(s) 402
SsiI CCGC 1 cut(s) 837
SspI AATATT 2 cut(s) 51, 652
SspMI CTAG 3 cut(s) 126, 1040, 1047
SstI GAGCTC 1 cut(s) 300
StuI AGGCCT 1 cut(s) 402
StyD4I CCNGG 5 cut(s) 231, 489, 598, 805, 874
StyI CCWWGG 2 cut(s) 219, 1065
TaaI ACNGT 2 cut(s) 478, 907
TaiI ACGT 2 cut(s) 196, 1190
TaqI TCGA 3 cut(s) 320, 1084, 1119
TfiI GAWTC 3 cut(s) 248, 533, 1145
Tru1I TTAA 7 cut(s) 171, 527, 587, 945, 1164, 1233, 1254
Tru9I TTAA 7 cut(s) 171, 527, 587, 945, 1164, 1233, 1254
TscAI CASTG 3 cut(s) 363, 504, 543
TseFI GTSAC 1 cut(s) 495
TseI GCWGC 2 cut(s) 506, 662
Tsp45I GTSAC 1 cut(s) 495
TspDTI ATGAA 6 cut(s) 368, 930, 1119, 1137, 1227, 1241
TspGWI ACGGA 2 cut(s) 302, 1126
TspRI CASTG 3 cut(s) 363, 504, 543
VneI GTGCAC 1 cut(s) 681
VpaK11BI GGWCC 2 cut(s) 461, 623
XagI CCTNNNNNAGG 2 cut(s) 407, 873
XapI RAATTY 3 cut(s) 66, 79, 818
XceI RCATGY 2 cut(s) 989, 1039
XmiI GTMKAC 1 cut(s) 1184
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 3 cut(s) 126, 1040, 1047
Zsp2I ATGCAT 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.