Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003894.1

Orthogroup ID

OG0018685

Physical Location & Seq

Genomic Coordinates Reverse (-)

37360 .. 39358

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgaaatggctgataggtgcggcggatcagggttccaattgtgagcttggaagggaaggtcatggagattgcgacggcggcgacgatcacggccatggtgaagtagagtatggcgtgctagcgggtgcattaggaaagaggaagtcggtggagctcggtgtcggttggatcgtcggagtcggcaggagtaatcaagtggtgttctcgtttcgaaatgaaggagatctaaagtgggctgtgaaaggctacccatggtccttcgagaaagccttggtagcagatgcggtaacagatggtcgtgaggatccagagaaggtgtctcttcaaacccaatttttctggattcatgcaggttggatggaaacccggagatttgaactggagtatgagtgtcttccacatttttacttcttttgtagtctactgtcacacatgggggcgaagtgctcacgcaaggagaagggagaattgactgaacctgcttatgacgctcttatggatgcggagagaaaggaggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1

Protein Analysis

173

Amino Acids

19.34

Weight (kDa)

5.15

Isoelectric Point (pI)

26.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018685)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003894.1_g000010 Rmu_sc0008421.1_g000003 Rmu_sc0020964.1_g000003
rosa_roxburghii	Rroxscaffold_2G00133830 Rroxscaffold_5G00343430 Rroxscaffold_6G00399990
rosa_samantha	Rh2AG325300 Rh3BG281600 Rh3CG277600
rosa_wichuraiana	Rw3G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	341, 487
AccI	GTMKAC	1 cut(s)	421
AciI	CCGC	6 cut(s)	20, 23, 78, 122, 284, 503
AclWI	GGATC	4 cut(s)	33, 176, 299, 312
AcoI	YGGCCR	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	326, 377
AluBI	AGCT	2 cut(s)	46, 154
AluI	AGCT	2 cut(s)	46, 154
Alw21I	GWGCWC	2 cut(s)	156, 449
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	4 cut(s)	33, 176, 299, 312
AoxI	GGCC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	255
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	110
AsuII	TTCGAA	1 cut(s)	211
AsuNHI	GCTAGC	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	386
Bbv12I	GWGCWC	2 cut(s)	156, 449
BccI	CCATC	2 cut(s)	287, 352
BceAI	ACGGC	2 cut(s)	91, 106
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	1 cut(s)	119
BfuAI	ACCTGC	2 cut(s)	341, 487
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	2 cut(s)	21, 79
BlsI	GCNGC	2 cut(s)	22, 80
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	34, 306
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	2 cut(s)	271, 490
BmtI	GCTAGC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	401
Bpu14I	TTCGAA	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	3 cut(s)	94, 251, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse1I	ACTGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	94, 251, 270
BseGI	GGATG	2 cut(s)	363, 505
BseNI	ACTGG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	156, 449
BsiSI	CCGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	156, 449
Bsp143I	GATC	5 cut(s)	25, 85, 168, 223, 304
Bsp19I	CCATGG	2 cut(s)	94, 251
BspACI	CCGC	6 cut(s)	20, 23, 78, 122, 284, 503
BspANI	GGCC	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	34, 306
BspMI	ACCTGC	2 cut(s)	341, 487
BspOI	GCTAGC	1 cut(s)	122
BspPI	GGATC	4 cut(s)	33, 176, 299, 312
BspT104I	TTCGAA	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	3 cut(s)	94, 251, 270
BssMI	GATC	5 cut(s)	25, 85, 168, 223, 304
BssT1I	CCWWGG	3 cut(s)	94, 251, 270
Bst4CI	ACNGT	1 cut(s)	426
Bst6I	CTCTTC	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	116, 120
BstDEI	CTNAG	1 cut(s)	519
BstDSI	CCRYGG	2 cut(s)	94, 251
BstF5I	GGATG	2 cut(s)	363, 505
BstKTI	GATC	5 cut(s)	28, 88, 171, 226, 307
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	5 cut(s)	25, 85, 168, 223, 304
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 275, 488
BstSCI	CCNGG	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	2 cut(s)	223, 304
BstYI	RGATCY	2 cut(s)	223, 304
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	2 cut(s)	94, 251
BtsCI	GGATG	2 cut(s)	363, 505
BveI	ACCTGC	2 cut(s)	341, 487
Cac8I	GCNNGC	2 cut(s)	116, 120
Cfr13I	GGNCC	1 cut(s)	255
CseI	GACGC	1 cut(s)	497
CviAII	CATG	5 cut(s)	62, 95, 252, 347, 433
CviJI	RGCY	8 cut(s)	10, 46, 93, 154, 236, 246, 269, 518
CviKI_1	RGCY	8 cut(s)	10, 46, 93, 154, 236, 246, 269, 518
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	5 cut(s)	27, 87, 170, 225, 306
DpnII	GATC	5 cut(s)	25, 85, 168, 223, 304
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	3 cut(s)	94, 251, 270
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	154
EcoT14I	CCWWGG	3 cut(s)	94, 251, 270
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	3 cut(s)	94, 251, 270
FaeI	CATG	5 cut(s)	65, 98, 255, 350, 436
FaiI	YATR	9 cut(s)	63, 96, 111, 253, 348, 387, 434, 486, 497
FatI	CATG	5 cut(s)	61, 94, 251, 346, 432
FauI	CCCGC	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	21, 79
FokI	GGATG	2 cut(s)	370, 512
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	21, 79
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	2 cut(s)	21, 79
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	1 cut(s)	367
HgaI	GACGC	1 cut(s)	497
Hin1II	CATG	5 cut(s)	65, 98, 255, 350, 436
HinfI	GANTC	2 cut(s)	177, 343
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	4 cut(s)	262, 299, 308, 340
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	3 cut(s)	77, 86, 176
HpyAV	CCTTC	6 cut(s)	45, 50, 212, 268, 307, 454
HpyCH4III	ACNGT	1 cut(s)	426
HpyCH4V	TGCA	2 cut(s)	128, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 275, 488
HpyF3I	CTNAG	1 cut(s)	519
Hsp92II	CATG	5 cut(s)	65, 98, 255, 350, 436
Kzo9I	GATC	5 cut(s)	25, 85, 168, 223, 304
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	8 cut(s)	14, 169, 321, 325, 336, 365, 380, 492
LweI	GCATC	2 cut(s)	271, 490
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	2 cut(s)	286, 426
MalI	GATC	5 cut(s)	27, 87, 170, 225, 306
MboI	GATC	5 cut(s)	25, 85, 168, 223, 304
MboII	GAAGA	2 cut(s)	314, 386
MfeI	CAATTG	1 cut(s)	37
MflI	RGATCY	2 cut(s)	223, 304
MhlI	GDGCHC	2 cut(s)	156, 449
MluCI	AATT	3 cut(s)	37, 332, 467
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	3 cut(s)	146, 154, 335
MnlI	CCTC	3 cut(s)	132, 295, 508
MslI	CAYNNNNRTG	1 cut(s)	93
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	367
MunI	CAATTG	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	78, 275, 488
NciI	CCSGG	1 cut(s)	367
NcoI	CCATGG	2 cut(s)	94, 251
NdeII	GATC	5 cut(s)	25, 85, 168, 223, 304
NheI	GCTAGC	1 cut(s)	118
NlaIII	CATG	5 cut(s)	65, 98, 255, 350, 436
NlaIV	GGNNCC	2 cut(s)	34, 306
NmuCI	GTSAC	1 cut(s)	426
NspV	TTCGAA	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 168
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	22, 80
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	34, 306
PspPI	GGNCC	1 cut(s)	255
PsuI	RGATCY	2 cut(s)	223, 304
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	156
SatI	GCNGC	2 cut(s)	21, 79
Sau3AI	GATC	5 cut(s)	25, 85, 168, 223, 304
Sau96I	GGNCC	1 cut(s)	255
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	2 cut(s)	156, 449
SetI	ASST	7 cut(s)	19, 48, 61, 156, 318, 355, 481
SfaNI	GCATC	2 cut(s)	271, 490
SfuI	TTCGAA	1 cut(s)	211
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	3 cut(s)	37, 332, 467
SsiI	CCGC	6 cut(s)	20, 23, 78, 122, 284, 503
SspMI	CTAG	1 cut(s)	119
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	3 cut(s)	94, 251, 270
TaaI	ACNGT	1 cut(s)	426
TaqI	TCGA	2 cut(s)	211, 261
TasI	AATT	3 cut(s)	37, 332, 467
TauI	GCSGC	2 cut(s)	23, 81
TfiI	GAWTC	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	426
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	3 cut(s)	17, 231, 335
VpaK11BI	GGWCC	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	421
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.