Rmu_sc0020964.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020964.1
OG0018685
Physical Location & Seq
Forward (+)
2064 .. 2351
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020964.1_g000003.1.cds

Sequence Viewer

Length: 288 bp
atgcgagggctttggctacagaaggatggcccgccggataagtcccggatctcggcggttccgttacagggaagtaatcgaatcctgctctctttcaagaatgtggatgacttcaaatgggcgatcagatgtggcccttggtcttacgagaaagtgctgtttgcgattgctgtcactaatgctcttgaagatcccttgaaggtgtctttgtcgacgcaatatttatggatccgcatacggtgtcttcccccgaaatacatggatgaagagactggtgaaagtatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

95

Amino Acids

10.91

Weight (kDa)

8.64

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 212
AciI CCGC 3 cut(s) 32, 56, 232
AclWI GGATC 4 cut(s) 56, 185, 223, 236
AfiI CCNNNNNNNGG 2 cut(s) 52, 68
AgsI TTSAA 4 cut(s) 97, 115, 188, 199
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 4 cut(s) 56, 185, 223, 236
AoxI GGCC 2 cut(s) 28, 133
AspS9I GGNCC 2 cut(s) 29, 134
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 287
BamHI GGATCC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 236
BccI CCATC 1 cut(s) 20
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 29, 134
BmiI GGNNCC 2 cut(s) 60, 230
BmrFI CCNGG 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 68
Bse1I ACTGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 3 cut(s) 31, 112, 268
BseLI CCNNNNNNNGG 2 cut(s) 52, 68
BseNI ACTGG 1 cut(s) 277
BshFI GGCC 2 cut(s) 30, 135
BsiSI CCGG 2 cut(s) 35, 46
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 52, 68
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 2 cut(s) 30, 135
Bsp143I GATC 4 cut(s) 48, 123, 190, 228
BspACI CCGC 3 cut(s) 32, 56, 232
BspANI GGCC 2 cut(s) 30, 135
BspLI GGNNCC 2 cut(s) 60, 230
BspPI GGATC 4 cut(s) 56, 185, 223, 236
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 4 cut(s) 48, 123, 190, 228
BssT1I CCWWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 32
BstF5I GGATG 3 cut(s) 31, 112, 268
BstKTI GATC 4 cut(s) 51, 126, 193, 231
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 4 cut(s) 48, 123, 190, 228
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 236
BstX2I RGATCY 3 cut(s) 48, 190, 228
BstYI RGATCY 3 cut(s) 48, 190, 228
BsuRI GGCC 2 cut(s) 30, 135
BtsCI GGATG 3 cut(s) 31, 112, 268
Cac8I GCNNGC 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 29, 134
CseI GACGC 1 cut(s) 223
CviAII CATG 1 cut(s) 259
CviJI RGCY 4 cut(s) 10, 16, 30, 135
CviKI_1 RGCY 4 cut(s) 10, 16, 30, 135
DpnI GATC 4 cut(s) 50, 125, 192, 230
DpnII GATC 4 cut(s) 48, 123, 190, 228
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 1 cut(s) 262
FaiI YATR 3 cut(s) 226, 236, 260
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 258
FauI CCCGC 1 cut(s) 39
FblI GTMKAC 1 cut(s) 212
FokI GGATG 3 cut(s) 38, 119, 275
HaeIII GGCC 2 cut(s) 30, 135
HapII CCGG 2 cut(s) 35, 46
HgaI GACGC 1 cut(s) 223
Hin1II CATG 1 cut(s) 262
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 1 cut(s) 81
HpaII CCGG 2 cut(s) 35, 46
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 2 cut(s) 97, 185
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 16, 193
HpyCH4III ACNGT 1 cut(s) 240
Hsp92II CATG 1 cut(s) 262
Kzo9I GATC 4 cut(s) 48, 123, 190, 228
LpnPI CCDG 5 cut(s) 48, 53, 59, 98, 258
MaeIII GTNAC 2 cut(s) 63, 172
MalI GATC 4 cut(s) 50, 125, 192, 230
MboI GATC 4 cut(s) 48, 123, 190, 228
MboII GAAGA 3 cut(s) 200, 236, 278
MflI RGATCY 3 cut(s) 48, 190, 228
MspI CCGG 2 cut(s) 35, 46
MspR9I CCNGG 1 cut(s) 46
NciI CCSGG 1 cut(s) 46
NdeII GATC 4 cut(s) 48, 123, 190, 228
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 60, 230
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PfeI GAWTC 1 cut(s) 81
PfoI TCCNGGA 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 60, 230
PspPI GGNCC 2 cut(s) 29, 134
PsuI RGATCY 3 cut(s) 48, 190, 228
SalI GTCGAC 1 cut(s) 211
Sau3AI GATC 4 cut(s) 48, 123, 190, 228
Sau96I GGNCC 2 cut(s) 29, 134
ScrFI CCNGG 1 cut(s) 46
SetI ASST 1 cut(s) 204
SfcI CTRYAG 1 cut(s) 17
SsiI CCGC 3 cut(s) 32, 56, 232
SspI AATATT 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 79, 212
TfiI GAWTC 1 cut(s) 81
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 279
TspGWI ACGGA 1 cut(s) 51
XmiI GTMKAC 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.