Rroxscaffold_5G00343430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018685
Physical Location & Seq
Forward (+)
12928195 .. 12928621
427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343430.1

Sequence Viewer

Length: 246 bp
ATGAAGACGTTAGTGAGGACAGTGAAGAAGGTCATTTCATGGAGATGGAATTTGGGTTTTATGGGATCAAAGGAAGCAAAGAGGGTTAGTTGTGGGCTTGGAAGGGAGGGTCATGGAGATTGCAACGGCGGCGACGATCATAGCCATAGTGAAGTAGAGTATGACATGCTAGCTGGTGCAGTAGGAAAGAAGAAGTCGGTGGAGCTCGGCGCCGGTTGGATCGTCGGAGTTGGTGGAGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.67

Weight (kDa)

8.66

Isoelectric Point (pI)

23.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AciI CCGC 1 cut(s) 129
AclWI GGATC 2 cut(s) 73, 227
AcsI RAATTY 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 210
AluBI AGCT 2 cut(s) 173, 205
AluI AGCT 2 cut(s) 173, 205
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 2 cut(s) 73, 227
ApoI RAATTY 1 cut(s) 49
AspLEI GCGC 1 cut(s) 212
AsuNHI GCTAGC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 142
BfaI CTAG 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 213
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 211
BmtI GCTAGC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 210
Bse118I RCCGGY 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 198
BshNI GGYRCC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 65, 136, 219
BspACI CCGC 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 173
BspPI GGATC 2 cut(s) 73, 227
BspT107I GGYRCC 1 cut(s) 209
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssMI GATC 3 cut(s) 65, 136, 219
BssNI GRCGYC 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 3 cut(s) 68, 139, 222
BstMBI GATC 3 cut(s) 65, 136, 219
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 212
CviAII CATG 3 cut(s) 39, 113, 166
CviJI RGCY 4 cut(s) 97, 144, 173, 205
CviKI_1 RGCY 4 cut(s) 97, 144, 173, 205
DinI GGCGCC 1 cut(s) 211
DpnI GATC 3 cut(s) 67, 138, 221
DpnII GATC 3 cut(s) 65, 136, 219
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 207
EgeI GGCGCC 1 cut(s) 211
EheI GGCGCC 1 cut(s) 211
FaeI CATG 3 cut(s) 42, 116, 169
FaiI YATR 7 cut(s) 40, 62, 114, 141, 147, 162, 167
FatI CATG 3 cut(s) 38, 112, 165
Fnu4HI GCNGC 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 213
HapII CCGG 1 cut(s) 213
HhaI GCGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 3 cut(s) 42, 116, 169
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HpaII CCGG 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 227
Hpy99I CGWCG 2 cut(s) 137, 227
HpyAV CCTTC 2 cut(s) 22, 96
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 123, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 3 cut(s) 42, 116, 169
HspAI GCGC 1 cut(s) 210
KasI GGCGCC 1 cut(s) 209
Kzo9I GATC 3 cut(s) 65, 136, 219
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 2 cut(s) 159, 226
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 8
MalI GATC 3 cut(s) 67, 138, 221
MboI GATC 3 cut(s) 65, 136, 219
MboII GAAGA 3 cut(s) 16, 37, 202
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 49, 241
Mly113I GGCGCC 1 cut(s) 210
MmeI TCCRAC 2 cut(s) 197, 205
MnlI CCTC 3 cut(s) 9, 75, 100
MslI CAYNNNNRTG 1 cut(s) 43
MspI CCGG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 129
NarI GGCGCC 1 cut(s) 210
NdeII GATC 3 cut(s) 65, 136, 219
NheI GCTAGC 1 cut(s) 169
NlaIII CATG 3 cut(s) 42, 116, 169
NlaIV GGNNCC 1 cut(s) 211
NmeAIII GCCGAG 1 cut(s) 186
NspI RCATGY 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PkrI GCNGC 1 cut(s) 131
PluTI GGCGCC 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 43
SacI GAGCTC 1 cut(s) 207
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 3 cut(s) 65, 136, 219
SduI GDGCHC 1 cut(s) 207
SetI ASST 4 cut(s) 11, 33, 175, 207
SfoI GGCGCC 1 cut(s) 211
SgeI CNNG 8 cut(s) 51, 110, 125, 178, 182, 186, 218, 225
SmiMI CAYNNNNRTG 1 cut(s) 43
Sse9I AATT 2 cut(s) 49, 241
SsiI CCGC 1 cut(s) 129
SspDI GGCGCC 1 cut(s) 209
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 207
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 11
TasI AATT 2 cut(s) 49, 241
TauI GCSGC 1 cut(s) 132
TscAI CASTG 1 cut(s) 27
TspDTI ATGAA 2 cut(s) 17, 27
TspRI CASTG 1 cut(s) 27
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 169
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.