Rh2AG325300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018685
Physical Location & Seq
Reverse (-)
46754906 .. 46755511
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG325300.1

Sequence Viewer

Length: 606 bp
ATGATAGCTGGGGCGGATCAAATGGAGGTAGATAGAGTAGTAGGGTCAAAGCAGATACAAGGGGATGCGAAACGGCGATGTGTTGGGGACATGGAGGTGTACCGGCAACGGCCACTGCCAGATCTGACACCGGAAGTAGAGTTGACTTTGTGTGATGTCCCAATTAGGGAATGCTCGGATTTTCAGCCTCCAACTTTGATGAGCAGTAATGACGGTGGCATGGGAAGGACTATGTTACAGGAGGGAATGCAGGAAGGTATCACGGAGATGGTGCAGACTGTTATGCCGACTAGTGAGCTTCAAAAAATGGAAAGGGAGTCTTTTCAGCAGGGGATTGGGAAAGCAATAAAGAGTGGTAGTCCATCGGCTCCTATTGAGGTGATGAGGCGTAAAACACAGAGTGAAGGTTTGATAGCCTCAAATTTGAATCTAGGGATTAAGGCGGGAAGCCGGGCGGGTGGTGAAAGTGGTCCTCAAACAGTTGGGCCGGGTACTAAAGTAGCGGGTGGCAGTAAACAAAAAGATTTGAAGCTGGGAACCCGCGTGGAGGAGAAGAAGGGTTTCAAAGTGCGAAAGCATGCAGTTAACGTGATCATCAAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.67

Weight (kDa)

8.99

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 543
AciI CCGC 5 cut(s) 14, 443, 455, 503, 541
AclWI GGATC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 1 cut(s) 421
AdeI CACNNNGTG 1 cut(s) 401
AfaI GTAC 2 cut(s) 101, 493
AfiI CCNNNNNNNGG 2 cut(s) 166, 547
AgsI TTSAA 4 cut(s) 302, 427, 529, 565
AhlI ACTAGT 1 cut(s) 290
AluBI AGCT 3 cut(s) 8, 298, 532
AluI AGCT 3 cut(s) 8, 298, 532
AlwI GGATC 1 cut(s) 24
AoxI GGCC 2 cut(s) 110, 485
ApoI RAATTY 1 cut(s) 421
Asp700I GAANNNNTTC 1 cut(s) 560
AspS9I GGNCC 2 cut(s) 470, 485
AsuC2I CCSGG 2 cut(s) 452, 489
AsuHPI GGTGA 2 cut(s) 391, 473
AvaII GGWCC 1 cut(s) 470
BaeI ACNNNNGTAYC 2 cut(s) 483, 516
BccI CCATC 2 cut(s) 262, 370
BceAI ACGGC 2 cut(s) 89, 125
BclI TGATCA 1 cut(s) 591
BcnI CCSGG 2 cut(s) 452, 489
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 2 cut(s) 291, 431
BglII AGATCT 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 452, 489
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 470, 485
BmiI GGNNCC 2 cut(s) 369, 538
BmrFI CCNGG 2 cut(s) 452, 489
BmsI GCATC 1 cut(s) 55
BpuMI CCSGG 2 cut(s) 452, 489
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 547
Bse118I RCCGGY 1 cut(s) 102
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 2 cut(s) 166, 547
BseRI GAGGAG 1 cut(s) 563
BseYI CCCAGC 2 cut(s) 8, 532
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 543
BshFI GGCC 2 cut(s) 112, 487
BsiSI CCGG 4 cut(s) 103, 131, 451, 488
BslFI GGGAC 2 cut(s) 101, 143
BslI CCNNNNNNNGG 2 cut(s) 166, 547
BsmFI GGGAC 2 cut(s) 101, 143
BsmI GAATGC 2 cut(s) 176, 252
BsnI GGCC 2 cut(s) 112, 487
Bsp143I GATC 3 cut(s) 16, 121, 591
BspACI CCGC 5 cut(s) 14, 443, 455, 503, 541
BspANI GGCC 2 cut(s) 112, 487
BspFNI CGCG 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 369, 538
BspPI GGATC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 102
BssMI GATC 3 cut(s) 16, 121, 591
Bst4CI ACNGT 3 cut(s) 215, 280, 481
BstC8I GCNNGC 1 cut(s) 579
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 543
BstKTI GATC 3 cut(s) 19, 124, 594
BstMBI GATC 3 cut(s) 16, 121, 591
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 450, 487
BstUI CGCG 1 cut(s) 543
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 2 cut(s) 112, 487
BtgZI GCGATG 1 cut(s) 91
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 579
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 470, 485
Csp6I GTAC 2 cut(s) 100, 492
CviAII CATG 3 cut(s) 91, 220, 578
CviJI RGCY 9 cut(s) 8, 112, 187, 298, 368, 416, 450, 487, 532
CviKI_1 RGCY 9 cut(s) 8, 112, 187, 298, 368, 416, 450, 487, 532
CviQI GTAC 2 cut(s) 100, 492
DpnI GATC 3 cut(s) 18, 123, 593
DpnII GATC 3 cut(s) 16, 121, 591
DraIII CACNNNGTG 1 cut(s) 401
EaeI YGGCCR 1 cut(s) 110
EciI GGCGGA 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 470
FaeI CATG 3 cut(s) 94, 223, 581
FaiI YATR 5 cut(s) 92, 221, 233, 284, 579
FalI AAGNNNNNCTT 2 cut(s) 304, 336
FaqI GGGAC 2 cut(s) 101, 143
FatI CATG 3 cut(s) 90, 219, 577
FauI CCCGC 4 cut(s) 436, 448, 496, 548
FbaI TGATCA 1 cut(s) 591
FokI GGATG 1 cut(s) 77
FspBI CTAG 2 cut(s) 291, 431
GsaI CCCAGC 2 cut(s) 12, 536
HaeIII GGCC 2 cut(s) 112, 487
HapII CCGG 4 cut(s) 103, 131, 451, 488
Hin1II CATG 3 cut(s) 94, 223, 581
HincII GTYRAC 2 cut(s) 144, 586
HindII GTYRAC 2 cut(s) 144, 586
HinfI GANTC 2 cut(s) 317, 427
HpaI GTTAAC 1 cut(s) 586
HpaII CCGG 4 cut(s) 103, 131, 451, 488
HphI GGTGA 2 cut(s) 391, 473
Hpy166II GTNNAC 4 cut(s) 100, 144, 515, 586
Hpy188I TCNGA 2 cut(s) 126, 178
Hpy8I GTNNAC 4 cut(s) 100, 144, 515, 586
HpyAV CCTTC 4 cut(s) 219, 248, 398, 550
HpyCH4III ACNGT 3 cut(s) 215, 280, 481
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 3 cut(s) 250, 274, 581
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 3 cut(s) 94, 223, 581
Ksp22I TGATCA 1 cut(s) 591
KspAI GTTAAC 1 cut(s) 586
Kzo9I GATC 3 cut(s) 16, 121, 591
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 9 cut(s) 116, 132, 144, 224, 236, 314, 464, 501, 518
LweI GCATC 1 cut(s) 55
MaeI CTAG 2 cut(s) 291, 431
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 1 cut(s) 234
MalI GATC 3 cut(s) 18, 123, 593
MboI GATC 3 cut(s) 16, 121, 591
MboII GAAGA 1 cut(s) 565
MflI RGATCY 1 cut(s) 121
MluCI AATT 2 cut(s) 162, 421
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 9 cut(s) 19, 88, 198, 235, 370, 378, 427, 483, 541
MroXI GAANNNNTTC 1 cut(s) 560
MseI TTAA 2 cut(s) 438, 585
MslI CAYNNNNRTG 2 cut(s) 95, 266
MspI CCGG 4 cut(s) 103, 131, 451, 488
MspR9I CCNGG 2 cut(s) 452, 489
Mva1269I GAATGC 2 cut(s) 176, 252
MvnI CGCG 1 cut(s) 543
NciI CCSGG 2 cut(s) 452, 489
NdeII GATC 3 cut(s) 16, 121, 591
NlaIII CATG 3 cut(s) 94, 223, 581
NlaIV GGNNCC 2 cut(s) 369, 538
NspI RCATGY 1 cut(s) 581
PaeI GCATGC 1 cut(s) 581
PctI GAATGC 2 cut(s) 176, 252
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 1 cut(s) 427
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PspFI CCCAGC 2 cut(s) 8, 532
PspN4I GGNNCC 2 cut(s) 369, 538
PspPI GGNCC 2 cut(s) 470, 485
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 2 cut(s) 101, 493
RsaNI GTAC 2 cut(s) 100, 492
RseI CAYNNNNRTG 2 cut(s) 95, 266
SaqAI TTAA 2 cut(s) 438, 585
Sau3AI GATC 3 cut(s) 16, 121, 591
Sau96I GGNCC 2 cut(s) 470, 485
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 452, 489
SetI ASST 9 cut(s) 10, 30, 99, 259, 300, 381, 409, 534, 591
SfaNI GCATC 1 cut(s) 55
SinI GGWCC 1 cut(s) 470
SmiMI CAYNNNNRTG 2 cut(s) 95, 266
SpeI ACTAGT 1 cut(s) 290
SphI GCATGC 1 cut(s) 581
Sse9I AATT 2 cut(s) 162, 421
SsiI CCGC 5 cut(s) 14, 443, 455, 503, 541
SspMI CTAG 2 cut(s) 291, 431
StyD4I CCNGG 2 cut(s) 450, 487
TaaI ACNGT 3 cut(s) 215, 280, 481
TaiI ACGT 1 cut(s) 591
TasI AATT 2 cut(s) 162, 421
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 2 cut(s) 438, 585
Tru9I TTAA 2 cut(s) 438, 585
TscAI CASTG 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 1 cut(s) 421
XceI RCATGY 1 cut(s) 581
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 2 cut(s) 291, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.