Rroxscaffold_2G00133830

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
71300130 .. 71302284
2155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133830.1

Sequence Viewer

Length: 213 bp
ATGAAGTGGCTGATGGGTGCGGCAGATTGGGGGTTCGGCTGTGGGCTTGGAAGGGAGGGTCATGGAGATTGCGATGGTGGTGACTATCACGGCTATTGTGAAGTAGAGTATGGCGTGCCGGCGGGTGTAGTAGGAAAAAAGAAGTTGGTGGAGCTCAACGCTGGTTGGATCGTCGGAGTCGTTGTACACCAATTGCGGTCTCTAGGCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.42

Weight (kDa)

5.43

Isoelectric Point (pI)

18.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 20, 122, 196
AclWI GGATC 1 cut(s) 176
AfaI GTAC 1 cut(s) 186
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 92
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BccI CCATC 2 cut(s) 7, 68
BceAI ACGGC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 2 cut(s) 203, 211
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bse118I RCCGGY 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 204
Bso31I GGTCTC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 184
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 3 cut(s) 20, 122, 196
BspPI GGATC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 118
BsrGI TGTACA 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 118
BssMI GATC 1 cut(s) 168
BstAUI TGTACA 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 116, 120
BstKTI GATC 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 116, 120
Cfr10I RCCGGY 1 cut(s) 118
Csp6I GTAC 1 cut(s) 185
CviAII CATG 1 cut(s) 62
CviJI RGCY 5 cut(s) 10, 39, 46, 93, 154
CviKI_1 RGCY 5 cut(s) 10, 39, 46, 93, 154
CviQI GTAC 1 cut(s) 185
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 1 cut(s) 65
FaiI YATR 2 cut(s) 63, 111
FatI CATG 1 cut(s) 61
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 2 cut(s) 203, 211
GluI GCNGC 1 cut(s) 21
HapII CCGG 1 cut(s) 119
Hin1II CATG 1 cut(s) 65
HinfI GANTC 1 cut(s) 177
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 65
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 2 cut(s) 132, 147
MaeI CTAG 2 cut(s) 203, 211
MaeIII GTNAC 1 cut(s) 80
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MfeI CAATTG 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 1 cut(s) 191
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 2 cut(s) 146, 154
MnlI CCTC 1 cut(s) 49
MroNI GCCGGC 1 cut(s) 118
MspI CCGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 191
NaeI GCCGGC 1 cut(s) 120
NdeII GATC 1 cut(s) 168
NgoMIV GCCGGC 1 cut(s) 118
NlaIII CATG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 156
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SacI GAGCTC 1 cut(s) 156
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 168
SchI GAGTC 1 cut(s) 186
SduI GDGCHC 1 cut(s) 156
SetI ASST 1 cut(s) 156
SgeI CNNG 7 cut(s) 59, 74, 101, 127, 131, 135, 174
Sse9I AATT 1 cut(s) 191
SsiI CCGC 3 cut(s) 20, 122, 196
SspMI CTAG 2 cut(s) 203, 211
SstI GAGCTC 1 cut(s) 156
TasI AATT 1 cut(s) 191
TatI WGTACW 1 cut(s) 184
TauI GCSGC 1 cut(s) 23
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 2 cut(s) 203, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.