Rh3CG277600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018685
Physical Location & Seq
Reverse (-)
27834587 .. 27834793
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG277600.1

Sequence Viewer

Length: 207 bp
ATGGAAGAAGATGAGGCTCCAATGGTAGCTGGGGTTGATCAGATGGAGGTCGATAGAGCAGCTGGTTTGGAGCGGATACAGGGGGATGCGAAACTGCGGTGTGTAGGTGACATGGCGATGTACCGGCGATGGCCATTGCCGGATCCGACGTCGGACGCAGAGTTGACTCTGTGTGAGGTCCCAATTTGGGAATGCCTGGATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.69

Weight (kDa)

4.05

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 152
AccBSI CCGCTC 1 cut(s) 73
AciI CCGC 2 cut(s) 73, 97
AclWI GGATC 2 cut(s) 137, 150
AcoI YGGCCR 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 149
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 187
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 2 cut(s) 29, 62
AluI AGCT 2 cut(s) 29, 62
AlwI GGATC 2 cut(s) 137, 150
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 178
BalI TGGCCA 1 cut(s) 133
BamHI GGATCC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 71
BccI CCATC 2 cut(s) 37, 123
BciT130I CCWGG 1 cut(s) 197
BciVI GTATCC 1 cut(s) 69
BclI TGATCA 1 cut(s) 37
BfaI CTAG 1 cut(s) 205
BfuI GTATCC 1 cut(s) 69
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 3 cut(s) 18, 144, 180
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 76
BsaHI GRCGYC 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 71
BseYI CCCAGC 1 cut(s) 29
BshFI GGCC 1 cut(s) 133
BsiSI CCGG 2 cut(s) 124, 140
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 37, 142
BspACI CCGC 2 cut(s) 73, 97
BspANI GGCC 1 cut(s) 133
BspLI GGNNCC 3 cut(s) 18, 144, 180
BspPI GGATC 2 cut(s) 137, 150
BsrBI CCGCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 123
BssMI GATC 2 cut(s) 37, 142
BssNI GRCGYC 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 149
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 2 cut(s) 40, 145
BstMBI GATC 2 cut(s) 37, 142
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 133
BtgZI GCGATG 2 cut(s) 131, 142
BtsCI GGATG 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 178
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 112
CviJI RGCY 4 cut(s) 17, 29, 62, 133
CviKI_1 RGCY 4 cut(s) 17, 29, 62, 133
CviQI GTAC 1 cut(s) 121
DpnI GATC 2 cut(s) 39, 144
DpnII GATC 2 cut(s) 37, 142
EaeI YGGCCR 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 111
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 205
GluI GCNGC 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 33
HaeIII GGCC 1 cut(s) 133
HapII CCGG 2 cut(s) 124, 140
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 1 cut(s) 115
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 1 cut(s) 166
HpaII CCGG 2 cut(s) 124, 140
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 3 cut(s) 42, 147, 154
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 2 cut(s) 151, 154
HpyCH4IV ACGT 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 2 cut(s) 37, 142
LmnI GCTCC 2 cut(s) 22, 70
LpnPI CCDG 6 cut(s) 15, 48, 65, 137, 153, 182
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 205
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 107
MalI GATC 2 cut(s) 39, 144
MbiI CCGCTC 1 cut(s) 73
MboI GATC 2 cut(s) 37, 142
MboII GAAGA 2 cut(s) 17, 20
MflI RGATCY 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 133
MluCI AATT 1 cut(s) 183
MluNI TGGCCA 1 cut(s) 133
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 2 cut(s) 132, 170
MnlI CCTC 3 cut(s) 7, 40, 169
Mox20I TGGCCA 1 cut(s) 133
MscI TGGCCA 1 cut(s) 133
MslI CAYNNNNRTG 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 133
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 2 cut(s) 124, 140
MspR9I CCNGG 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
NdeII GATC 2 cut(s) 37, 142
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 3 cut(s) 18, 144, 180
NmuCI GTSAC 1 cut(s) 107
PctI GAATGC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PpuMI RGGWCCY 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 3 cut(s) 18, 144, 180
PspPI GGNCC 1 cut(s) 178
PspPPI RGGWCCY 1 cut(s) 178
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 116
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 37, 142
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 197
SetI ASST 6 cut(s) 31, 51, 64, 109, 152, 180
SfaNI GCATC 1 cut(s) 76
SgeI CNNG 6 cut(s) 42, 75, 92, 124, 136, 152
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 1 cut(s) 183
SsiI CCGC 2 cut(s) 73, 97
SspMI CTAG 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 195
TaiI ACGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 183
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 178
XspI CTAG 1 cut(s) 205
ZraI GACGTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.