Rh3BG281600

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0018685
Physical Location & Seq
Reverse (-)
27947371 .. 27948731
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG281600.1

Sequence Viewer

Length: 780 bp
ATGGAAGAAGTTACTGAGGGTTTCTCGAGGAAGATGGCTTTGTCCGACCCTACTTTTGTGGTGGTGGTTTCAAAAGAAGCTTTACAGAAGAAACCGAAACGGTGGTTCCTGGTGGGGGAATGGTGGTCAATGAAGCCTTACAGAAAAGATCTGCTTATCAACACAATGCGAGGGCTTTGGCTACAGAAGGATGGCCCGCCGGATAAGTCCCAGATCTCGGCGGTTCCTTTACAGGGAAATGGTGGTGGTCGGCGTTTGGGGTTGGTTAAGAAGACAAAACCTGGGTGGAGTTTATCTGTGCTGGATTTTCCTGTGACGGGGTTGGTCAGAACTAGGGCTAAGATGGAAGAAGAGGAGGCTCCAATGGTAGCTGGGGTTGATCAGATGGAGGTTAATAGAGCAGCTGGTTTGGAGCAGATACAGGGGGATGCGAAACGACGGTGTGTAAGTGACATGGCGATGTATCGGAGACGGCCATTGCCAGATCCGACGCCGGACGCGGAGTTGACTCTGTGTGAGGTCCCAATTCGGGAATGCCCTGATTTCCAGCCCCCAACTTTGATGGGCAGTAATGACGATGTCAAGAGAAGGAATCTGTTACAGGAGGCAATTAGGGAAGGTATCACAGAGATGATGCAGGCTGTTCTGCCGGTTAGTGATGAACAGAAAATGGAAAGGGAGTCATTTCAGCAGAGGGTTGGAAAAGCAATAAAGAGTGATAGTAATTCTGCTATGATTTCGAGGAAGGGGAATAAAAAAGGGGAAGATGATTTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000313 GO:0000462 GO:0000956 GO:0002164 GO:0002181 GO:0002182 GO:0002376 GO:0002520 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006414 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009790 GO:0009791 GO:0009792 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030097 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0035166 GO:0035167 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043009 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043253 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048513 GO:0048519 GO:0048534 GO:0048542 GO:0048569 GO:0048731 GO:0048732 GO:0048856 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Ribosomal_S8e

Protein Analysis

259

Amino Acids

29.22

Weight (kDa)

8.68

Isoelectric Point (pI)

55.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 500
AciI CCGC 3 cut(s) 197, 221, 500
AclWI GGATC 1 cut(s) 479
AcoI YGGCCR 1 cut(s) 473
AcyI GRCGYC 1 cut(s) 491
AfiI CCNNNNNNNGG 5 cut(s) 115, 217, 233, 317, 529
AgsI TTSAA 1 cut(s) 72
AjnI CCWGG 2 cut(s) 108, 280
AluBI AGCT 3 cut(s) 80, 371, 404
AluI AGCT 3 cut(s) 80, 371, 404
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 1 cut(s) 479
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 2 cut(s) 193, 473
ApeKI GCWGC 1 cut(s) 401
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspS9I GGNCC 2 cut(s) 194, 520
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 413
BccI CCATC 5 cut(s) 28, 185, 337, 379, 556
BceAI ACGGC 1 cut(s) 488
BciT130I CCWGG 2 cut(s) 110, 282
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 182
BglII AGATCT 2 cut(s) 148, 213
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 110, 282
Bme18I GGWCC 1 cut(s) 520
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 194, 520
BmiI GGNNCC 4 cut(s) 107, 225, 360, 522
BmrFI CCNGG 2 cut(s) 110, 282
BmsI GCATC 2 cut(s) 418, 624
BpiI GAAGAC 1 cut(s) 278
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BsaHI GRCGYC 1 cut(s) 491
BsaJI CCNNGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 217, 233, 317, 529
Bse118I RCCGGY 1 cut(s) 649
Bse3DI GCAATG 1 cut(s) 476
BseBI CCWGG 2 cut(s) 110, 282
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 2 cut(s) 196, 433
BseLI CCNNNNNNNGG 5 cut(s) 115, 217, 233, 317, 529
BseMI GCAATG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 6
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 413
BseYI CCCAGC 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 500
BshFI GGCC 2 cut(s) 195, 475
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 3 cut(s) 200, 494, 650
BslFI GGGAC 2 cut(s) 193, 506
BslI CCNNNNNNNGG 5 cut(s) 115, 217, 233, 317, 529
BsmAI GTCTC 1 cut(s) 463
BsmBI CGTCTC 1 cut(s) 463
BsmFI GGGAC 2 cut(s) 193, 506
BsmI GAATGC 1 cut(s) 539
BsnI GGCC 2 cut(s) 195, 475
BsoBI CYCGRG 1 cut(s) 25
Bsp143I GATC 4 cut(s) 148, 213, 379, 484
BspACI CCGC 3 cut(s) 197, 221, 500
BspANI GGCC 2 cut(s) 195, 475
BspCNI CTCAG 1 cut(s) 7
BspFNI CGCG 1 cut(s) 500
BspLI GGNNCC 4 cut(s) 107, 225, 360, 522
BspPI GGATC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 649
BssAI RCCGGY 1 cut(s) 649
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 4 cut(s) 148, 213, 379, 484
BssNI GRCGYC 1 cut(s) 491
Bst2UI CCWGG 2 cut(s) 110, 282
Bst4CI ACNGT 2 cut(s) 102, 441
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 197, 639
BstDEI CTNAG 2 cut(s) 15, 339
BstF5I GGATG 2 cut(s) 196, 433
BstFNI CGCG 1 cut(s) 500
BstKTI GATC 4 cut(s) 151, 216, 382, 487
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 4 cut(s) 148, 213, 379, 484
BstNI CCWGG 2 cut(s) 110, 282
BstSCI CCNGG 2 cut(s) 108, 280
BstSFI CTRYAG 1 cut(s) 182
BstUI CGCG 1 cut(s) 500
BstV1I GCAGC 1 cut(s) 413
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 3 cut(s) 148, 213, 484
BstYI RGATCY 3 cut(s) 148, 213, 484
BsuRI GGCC 2 cut(s) 195, 475
BtgZI GCGATG 1 cut(s) 473
BtsCI GGATG 2 cut(s) 196, 433
Cac8I GCNNGC 2 cut(s) 197, 639
Cfr10I RCCGGY 1 cut(s) 649
Cfr13I GGNCC 2 cut(s) 194, 520
CseI GACGC 2 cut(s) 499, 506
CviAII CATG 1 cut(s) 454
DdeI CTNAG 2 cut(s) 15, 339
DpnI GATC 4 cut(s) 150, 215, 381, 486
DpnII GATC 4 cut(s) 148, 213, 379, 484
EaeI YGGCCR 1 cut(s) 473
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 520
Eco88I CYCGRG 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 520
EcoRII CCWGG 2 cut(s) 108, 280
Esp3I CGTCTC 1 cut(s) 463
FaeI CATG 1 cut(s) 457
FaiI YATR 2 cut(s) 455, 734
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 2 cut(s) 193, 506
FatI CATG 1 cut(s) 453
FauI CCCGC 1 cut(s) 204
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 2 cut(s) 203, 440
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 1 cut(s) 333
GluI GCNGC 1 cut(s) 402
GsaI CCCAGC 1 cut(s) 375
HaeIII GGCC 2 cut(s) 195, 475
HapII CCGG 3 cut(s) 200, 494, 650
HgaI GACGC 2 cut(s) 499, 506
Hin1I GRCGYC 1 cut(s) 491
Hin1II CATG 1 cut(s) 457
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 3 cut(s) 508, 592, 680
HpaII CCGG 3 cut(s) 200, 494, 650
Hpy166II GTNNAC 1 cut(s) 507
Hpy188I TCNGA 5 cut(s) 46, 329, 384, 468, 489
Hpy188III TCNNGA 3 cut(s) 25, 530, 583
Hpy8I GTNNAC 1 cut(s) 507
Hpy99I CGWCG 2 cut(s) 441, 493
HpyAV CCTTC 4 cut(s) 181, 582, 611, 739
HpyCH4III ACNGT 2 cut(s) 102, 441
HpyCH4V TGCA 1 cut(s) 637
HpyF3I CTNAG 2 cut(s) 15, 339
Hsp92I GRCGYC 1 cut(s) 491
Hsp92II CATG 1 cut(s) 457
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 4 cut(s) 148, 213, 379, 484
LmnI GCTCC 2 cut(s) 364, 412
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 2 cut(s) 418, 624
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 4 cut(s) 10, 313, 449, 597
MalI GATC 4 cut(s) 150, 215, 381, 486
MboI GATC 4 cut(s) 148, 213, 379, 484
MboII GAAGA 7 cut(s) 17, 43, 100, 283, 359, 362, 776
MflI RGATCY 3 cut(s) 148, 213, 484
MluCI AATT 3 cut(s) 525, 609, 724
MlyI GAGTC 2 cut(s) 502, 689
MmeI TCCRAC 3 cut(s) 69, 512, 679
MseI TTAA 2 cut(s) 267, 393
MslI CAYNNNNRTG 2 cut(s) 458, 629
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 3 cut(s) 200, 494, 650
MspR9I CCNGG 2 cut(s) 110, 282
Mva1269I GAATGC 1 cut(s) 539
MvaI CCWGG 2 cut(s) 110, 282
MvnI CGCG 1 cut(s) 500
NdeII GATC 4 cut(s) 148, 213, 379, 484
NlaIII CATG 1 cut(s) 457
NlaIV GGNNCC 4 cut(s) 107, 225, 360, 522
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 2 cut(s) 313, 449
PaeR7I CTCGAG 1 cut(s) 25
PctI GAATGC 1 cut(s) 539
PfeI GAWTC 1 cut(s) 592
PflFI GACNNNGTC 1 cut(s) 578
PkrI GCNGC 1 cut(s) 403
PleI GAGTC 2 cut(s) 502, 688
PpsI GAGTC 2 cut(s) 502, 688
PpuMI RGGWCCY 1 cut(s) 520
Psp5II RGGWCCY 1 cut(s) 520
Psp6I CCWGG 2 cut(s) 108, 280
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 2 cut(s) 108, 280
PspN4I GGNNCC 4 cut(s) 107, 225, 360, 522
PspPI GGNCC 2 cut(s) 194, 520
PspPPI RGGWCCY 1 cut(s) 520
PsuI RGATCY 3 cut(s) 148, 213, 484
PsyI GACNNNGTC 1 cut(s) 578
PvuII CAGCTG 1 cut(s) 404
RseI CAYNNNNRTG 2 cut(s) 458, 629
SaqAI TTAA 2 cut(s) 267, 393
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 4 cut(s) 148, 213, 379, 484
Sau96I GGNCC 2 cut(s) 194, 520
SchI GAGTC 2 cut(s) 502, 689
ScrFI CCNGG 2 cut(s) 110, 282
SetI ASST 7 cut(s) 82, 283, 373, 393, 406, 522, 622
SfaNI GCATC 2 cut(s) 418, 624
SfcI CTRYAG 1 cut(s) 182
Sfr274I CTCGAG 1 cut(s) 25
SinI GGWCC 1 cut(s) 520
SlaI CTCGAG 1 cut(s) 25
SmiMI CAYNNNNRTG 2 cut(s) 458, 629
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 3 cut(s) 525, 609, 724
SsiI CCGC 3 cut(s) 197, 221, 500
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 108, 280
TaaI ACNGT 2 cut(s) 102, 441
TaqI TCGA 2 cut(s) 26, 740
TasI AATT 3 cut(s) 525, 609, 724
TfiI GAWTC 1 cut(s) 592
Tru1I TTAA 2 cut(s) 267, 393
Tru9I TTAA 2 cut(s) 267, 393
TseFI GTSAC 2 cut(s) 313, 449
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 2 cut(s) 313, 449
TspDTI ATGAA 2 cut(s) 146, 675
Tth111I GACNNNGTC 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 520
XhoI CTCGAG 1 cut(s) 25
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.