Rmu_sc0003990.1_g000002

nucleotide exchange factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003990.1
OG0017575
Physical Location & Seq
Forward (+)
6834 .. 7337
504 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
atggactgcagtttccgagctcgaactgtcttcttctcaaccttgggtctcaaacctgaacgaaatcatatctggaccatcacagactcctcactatacttgtctagtttccgcttagaagacaaacgcgccgccgtggtcaccggaggcttctcttcaatttcgtttctccatttgattccgctatcgacaccgacagaggcttctcctcactcgattcgatgttgcaatcaattggaaaaagcggcgaaagaggtgcagggattgaacccttccgacatgaacaagcagcgactcgagataaagcagctcatggaggagctcaaaacatcgtccgccgaagatgaggagattgctgcacatttacaggtgggcccgacccgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Fes1

Protein Analysis

128

Amino Acids

14.34

Weight (kDa)

6.41

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017575)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14570 FvH4_3g24840
malus_domestica MD06G1132800.v1.1
rosa_laevigata RLG00000008407 RLG00000016476 RLG00000022590
rosa_multiflora Rmu_sc0003990.1_g000002
rosa_samantha Rh1CG261300 Rh4CG007400 Rh4CG180700 Rh5AG034800 Rh5CG037200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 129
AciI CCGC 6 cut(s) 112, 132, 182, 245, 336, 382
AgsI TTSAA 2 cut(s) 159, 268
AluBI AGCT 3 cut(s) 20, 310, 322
AluI AGCT 3 cut(s) 20, 310, 322
Alw21I GWGCWC 2 cut(s) 22, 324
Alw26I GTCTC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 1 cut(s) 373
ApaI GGGCCC 1 cut(s) 377
ApeKI GCWGC 3 cut(s) 289, 307, 356
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 3 cut(s) 75, 373, 374
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 377
BanII GRGCYC 3 cut(s) 22, 324, 377
BbsI GAAGAC 2 cut(s) 22, 126
Bbv12I GWGCWC 2 cut(s) 22, 324
BbvI GCAGC 3 cut(s) 301, 319, 343
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 7
BisI GCNGC 5 cut(s) 132, 246, 290, 308, 357
BlsI GCNGC 5 cut(s) 133, 247, 291, 309, 358
Bme18I GGWCC 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 3 cut(s) 75, 373, 374
BmiI GGNNCC 1 cut(s) 375
BpiI GAAGAC 2 cut(s) 22, 126
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 42, 135
BsaWI WCCGGW 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 42, 135
BseRI GAGGAG 4 cut(s) 79, 198, 332, 362
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 3 cut(s) 301, 319, 343
BsgI GTGCAG 2 cut(s) 278, 342
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 375
BsiHKAI GWGCWC 2 cut(s) 22, 324
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 375
Bso31I GGTCTC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 296
Bsp120I GGGCCC 1 cut(s) 373
Bsp1286I GDGCHC 3 cut(s) 22, 324, 377
BspACI CCGC 6 cut(s) 112, 132, 182, 245, 336, 382
BspANI GGCC 1 cut(s) 375
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 375
BspMAI CTGCAG 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 42, 135
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 115
BstDSI CCRYGG 1 cut(s) 135
BstEII GGTNACC 1 cut(s) 139
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstPI GGTNACC 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 7
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 3 cut(s) 301, 319, 343
BstV2I GAAGAC 2 cut(s) 22, 126
BsuRI GGCC 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 135
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 3 cut(s) 75, 373, 374
CviAII CATG 2 cut(s) 280, 313
CviJI RGCY 6 cut(s) 20, 150, 203, 310, 322, 375
CviKI_1 RGCY 6 cut(s) 20, 150, 203, 310, 322, 375
DdeI CTNAG 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 325
Ecl136II GAGCTC 2 cut(s) 20, 322
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 3 cut(s) 22, 324, 377
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 75
Eco53kI GAGCTC 2 cut(s) 20, 322
Eco88I CYCGRG 1 cut(s) 296
Eco91I GGTNACC 1 cut(s) 139
EcoICRI GAGCTC 2 cut(s) 20, 322
EcoO65I GGTNACC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 42
EcoT38I GRGCYC 3 cut(s) 22, 324, 377
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 283, 316
FaiI YATR 4 cut(s) 69, 97, 281, 314
FatI CATG 2 cut(s) 279, 312
Fnu4HI GCNGC 5 cut(s) 132, 246, 290, 308, 357
FriOI GRGCYC 3 cut(s) 22, 324, 377
Fsp4HI GCNGC 5 cut(s) 132, 246, 290, 308, 357
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 130
GluI GCNGC 5 cut(s) 132, 246, 290, 308, 357
HaeIII GGCC 1 cut(s) 375
HapII CCGG 1 cut(s) 144
HhaI GCGC 1 cut(s) 131
Hin1II CATG 2 cut(s) 283, 316
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 4 cut(s) 86, 178, 217, 294
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 17, 277
Hpy188III TCNNGA 2 cut(s) 73, 298
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 4 cut(s) 9, 228, 259, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 1 cut(s) 115
Hsp92II CATG 2 cut(s) 283, 316
HspAI GCGC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 5 cut(s) 58, 69, 157, 245, 353
Lsp1109I GCAGC 3 cut(s) 301, 319, 343
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 139
MboII GAAGA 5 cut(s) 22, 25, 131, 147, 353
MfeI CAATTG 1 cut(s) 233
MhlI GDGCHC 3 cut(s) 22, 324, 377
MluCI AATT 2 cut(s) 159, 233
MlyI GAGTC 2 cut(s) 80, 288
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 7 cut(s) 100, 140, 193, 219, 247, 310, 340
MspI CCGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 233
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 381
NlaIII CATG 2 cut(s) 283, 316
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 139
PaeR7I CTCGAG 1 cut(s) 296
PfeI GAWTC 2 cut(s) 178, 217
PkrI GCNGC 5 cut(s) 133, 247, 291, 309, 358
PleI GAGTC 2 cut(s) 80, 288
PpsI GAGTC 2 cut(s) 80, 288
Psp124BI GAGCTC 2 cut(s) 22, 324
PspEI GGTNACC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 375
PspOMI GGGCCC 1 cut(s) 373
PspPI GGNCC 3 cut(s) 75, 373, 374
PstI CTGCAG 1 cut(s) 11
SacI GAGCTC 2 cut(s) 22, 324
SatI GCNGC 5 cut(s) 132, 246, 290, 308, 357
Sau96I GGNCC 3 cut(s) 75, 373, 374
SchI GAGTC 2 cut(s) 80, 288
SduI GDGCHC 3 cut(s) 22, 324, 377
SetI ASST 7 cut(s) 22, 44, 58, 258, 312, 324, 372
SfcI CTRYAG 1 cut(s) 7
Sfr274I CTCGAG 1 cut(s) 296
SinI GGWCC 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 159, 233
SsiI CCGC 6 cut(s) 112, 132, 182, 245, 336, 382
SspMI CTAG 1 cut(s) 105
SstI GAGCTC 2 cut(s) 22, 324
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 5 cut(s) 22, 188, 215, 220, 297
TasI AATT 2 cut(s) 159, 233
TauI GCSGC 2 cut(s) 134, 248
TfiI GAWTC 2 cut(s) 178, 217
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 3 cut(s) 289, 307, 356
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 75
XhoI CTCGAG 1 cut(s) 296
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.