Rmu_sc0004055.1_g000001

DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004055.1
OG0013954
Physical Location & Seq
Forward (+)
16 .. 483
468 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
atggtgagcgaggtcaagaagaagaagaaagagaccaaggagcagtcaatcaagtccagaaaaagctcacatggatcagagaacaatagagagcatcgtacaagttctgttagaagagtatcttcgagcacttcaccgggagttaagcttcggattaactctccgagaattgcaaaccggaaaattaaccaggcccaagtgggacgccggagtctgtcgtcgaattcgagctcaaagcggaggagtctctcggagagttttgcaattgtgaagtcgtcatttgatcctcaaagggatttcagggaatcaatgatagagatgatcatggagaacaacatcaaggcgtcaaaggacttggaagatcttcttgcatgttatctttctctgaatgcagatgaataccatgagctcatcatcaaagtcttcaagcaaatctggtttgatctcactgacatccagtcaaagtaa

Protein Analysis

155

Amino Acids

17.84

Weight (kDa)

10.04

Isoelectric Point (pI)

65.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 93 - 149 1.7e-25 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013954)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01840
fragaria_vesca FvH4_6g10140
malus_domestica MD04G1172500.v1.1 MD12G1185700.v1.1
prunus_persica Prupe.6G290900_v2.0.a1
pyrus_communis pycom04g15240 pycom12g17430
rosa_chinensis RchiOBHm_Chr3g0460841
rosa_laevigata RLG00000024975
rosa_multiflora Rmu_sc0004055.1_g000001
rosa_roxburghii Rroxscaffold_6G00419170
rosa_rugosa Rorug03G0046900.1
rosa_samantha Rh3AG104000 Rh3BG107600 Rh3CG109500 Rh3DG109500
rosa_wichuraiana Rw3G008850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 210
AciI CCGC 1 cut(s) 238
AclWI GGATC 2 cut(s) 82, 278
AcsI RAATTY 1 cut(s) 223
AcyI GRCGYC 2 cut(s) 205, 344
AfaI GTAC 1 cut(s) 100
AgsI TTSAA 1 cut(s) 427
AhdI GACNNNNNGTC 1 cut(s) 457
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 4 cut(s) 66, 148, 231, 409
AluI AGCT 4 cut(s) 66, 148, 231, 409
Alw21I GWGCWC 3 cut(s) 131, 233, 411
Alw26I GTCTC 2 cut(s) 26, 251
AlwI GGATC 2 cut(s) 82, 278
AoxI GGCC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 223
Asp700I GAANNNNTTC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 193
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 16, 126
BanII GRGCYC 2 cut(s) 233, 411
BbsI GAAGAC 1 cut(s) 415
Bbv12I GWGCWC 3 cut(s) 131, 233, 411
BciT130I CCWGG 1 cut(s) 191
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 26, 251
BglII AGATCT 1 cut(s) 361
Bme1390I CCNGG 2 cut(s) 138, 191
BmeRI GACNNNNNGTC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 193
BmrFI CCNGG 2 cut(s) 138, 191
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 138
BsaHI GRCGYC 2 cut(s) 205, 344
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 457
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 1 cut(s) 256
BshFI GGCC 1 cut(s) 194
BsiHKAI GWGCWC 3 cut(s) 131, 233, 411
BsiSI CCGG 3 cut(s) 137, 178, 208
BslFI GGGAC 1 cut(s) 216
BsmAI GTCTC 2 cut(s) 26, 251
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 26
Bsp1286I GDGCHC 3 cut(s) 131, 233, 411
Bsp143I GATC 5 cut(s) 74, 283, 321, 361, 442
BspACI CCGC 1 cut(s) 238
BspANI GGCC 1 cut(s) 194
BspPI GGATC 2 cut(s) 82, 278
BspTNI GGTCTC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 5 cut(s) 74, 283, 321, 361, 442
BssNI GRCGYC 2 cut(s) 205, 344
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 2 cut(s) 205, 344
BstF5I GGATG 1 cut(s) 453
BstKTI GATC 5 cut(s) 77, 286, 324, 364, 445
BstMAI GTCTC 2 cut(s) 26, 251
BstMBI GATC 5 cut(s) 74, 283, 321, 361, 442
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 2 cut(s) 136, 189
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 193
CseI GACGC 2 cut(s) 213, 333
Csp6I GTAC 1 cut(s) 99
CviAII CATG 4 cut(s) 71, 325, 372, 404
CviJI RGCY 5 cut(s) 66, 148, 194, 231, 409
CviKI_1 RGCY 5 cut(s) 66, 148, 194, 231, 409
CviQI GTAC 1 cut(s) 99
DpnI GATC 5 cut(s) 76, 285, 323, 363, 444
DpnII GATC 5 cut(s) 74, 283, 321, 361, 442
DrdI GACNNNNNNGTC 1 cut(s) 210
DriI GACNNNNNGTC 1 cut(s) 457
DseDI GACNNNNNNGTC 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 109
Ecl136II GAGCTC 2 cut(s) 231, 409
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 2 cut(s) 233, 411
Eco31I GGTCTC 1 cut(s) 26
Eco53kI GAGCTC 2 cut(s) 231, 409
EcoICRI GAGCTC 2 cut(s) 231, 409
EcoRI GAATTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 36
EcoT38I GRGCYC 2 cut(s) 233, 411
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 4 cut(s) 74, 328, 375, 407
FaiI YATR 4 cut(s) 72, 326, 373, 405
FalI AAGNNNNNCTT 4 cut(s) 106, 138, 351, 383
FaqI GGGAC 1 cut(s) 216
FatI CATG 4 cut(s) 70, 324, 371, 403
FbaI TGATCA 1 cut(s) 321
FokI GGATG 1 cut(s) 440
FriOI GRGCYC 2 cut(s) 233, 411
HaeIII GGCC 1 cut(s) 194
HapII CCGG 3 cut(s) 137, 178, 208
HgaI GACGC 2 cut(s) 213, 333
Hin1I GRCGYC 2 cut(s) 205, 344
Hin1II CATG 4 cut(s) 74, 328, 375, 407
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 3 cut(s) 211, 244, 305
HpaII CCGG 3 cut(s) 137, 178, 208
HphI GGTGA 2 cut(s) 16, 126
Hpy188I TCNGA 5 cut(s) 79, 153, 165, 253, 387
Hpy188III TCNNGA 2 cut(s) 16, 57
Hpy99I CGWCG 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 173, 263, 371, 392
Hsp92I GRCGYC 2 cut(s) 205, 344
Hsp92II CATG 4 cut(s) 74, 328, 375, 407
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 5 cut(s) 74, 283, 321, 361, 442
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 8 cut(s) 70, 150, 176, 191, 203, 221, 286, 421
LweI GCATC 1 cut(s) 103
MalI GATC 5 cut(s) 76, 285, 323, 363, 444
MboI GATC 5 cut(s) 74, 283, 321, 361, 442
MboII GAAGA 8 cut(s) 31, 34, 37, 114, 126, 356, 371, 415
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 3 cut(s) 131, 233, 411
MluCI AATT 4 cut(s) 168, 183, 223, 264
MlyI GAGTC 2 cut(s) 220, 253
MnlI CCTC 3 cut(s) 4, 234, 297
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 3 cut(s) 144, 156, 186
MspI CCGG 3 cut(s) 137, 178, 208
MspR9I CCNGG 2 cut(s) 138, 191
MunI CAATTG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 1 cut(s) 191
NciI CCSGG 1 cut(s) 138
NdeII GATC 5 cut(s) 74, 283, 321, 361, 442
NlaIII CATG 4 cut(s) 74, 328, 375, 407
NspI RCATGY 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 305
PleI GAGTC 2 cut(s) 219, 252
PpsI GAGTC 2 cut(s) 219, 252
Psp124BI GAGCTC 2 cut(s) 233, 411
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspPI GGNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SacI GAGCTC 2 cut(s) 233, 411
SaqAI TTAA 3 cut(s) 144, 156, 186
Sau3AI GATC 5 cut(s) 74, 283, 321, 361, 442
Sau96I GGNCC 1 cut(s) 193
SchI GAGTC 2 cut(s) 220, 253
ScrFI CCNGG 2 cut(s) 138, 191
SduI GDGCHC 3 cut(s) 131, 233, 411
SetI ASST 5 cut(s) 15, 68, 150, 233, 411
SfaNI GCATC 1 cut(s) 103
Sse9I AATT 4 cut(s) 168, 183, 223, 264
SsiI CCGC 1 cut(s) 238
SstI GAGCTC 2 cut(s) 233, 411
StyD4I CCNGG 2 cut(s) 136, 189
StyI CCWWGG 1 cut(s) 36
TaqI TCGA 3 cut(s) 125, 221, 227
TasI AATT 4 cut(s) 168, 183, 223, 264
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 3 cut(s) 144, 156, 186
Tru9I TTAA 3 cut(s) 144, 156, 186
TscAI CASTG 1 cut(s) 454
TspDTI ATGAA 1 cut(s) 411
TspRI CASTG 1 cut(s) 454
XapI RAATTY 1 cut(s) 223
XceI RCATGY 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.