Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004138.1

Orthogroup ID

OG0018047

Physical Location & Seq

Genomic Coordinates Reverse (-)

9743 .. 12989

Gene Structure 3247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atgtatagaaagttagataaaagaatggatcatcatctggagggttggcagagcaaatttctctctaaagctgggaagctgatattagtgaaagcagtggctcaggcaatcccaacttatacgatgagtgtttttaaattgccaaaaggggtacagcgaaggtttcaatctaagataactaggttccggtggggtaagggtggtgataagaaagggatgcattggtgcaagtgggagaaattgtgtggcagtaaatgggatggtggtttgggatttagagatttggagattttcaataaagctctgctagccaaaacgttttggcagctaatgctttctctgcattctctcgacagcaggttaactagagttaagtactttccagatgcagattggttggatgcctggagaactgattctttgcaagaacattccttgcctcattggacgaagccaatatgcattggaaaacatgctttcggtgatcaatatcgagcaactgatacagttatcaaaggacctggaaaattgaaattgttgtttgttccagaaggaaaggacgagatgaccgaactggaattacacaactttacaggggaagggggagtagtaattgccatgtacaacaccgatgagtcaatctgtgcttttgtagaagcttctatgaacacagcttatgagaaaaaggtggcctcttataatagcacaaaaagcaatattcttaataagtatgatggaaggttcaaggacatatttcaagaagtttatgatgcccattggaaatcgaagtatgaagctgctggcatatggtatgaacatcacctcattgatgatatggtggcttacacattcaaaagtgaaggtggttatgtttgggcatccaagaattatgatggcgatgtgcaaagtgatttcttagctcaagcggctcaatcccatcagtctgaatctcttttctctcgcttcctcctcaacttcaatttcatgctgctcaagtctagccccctccctaatcaactgcccaccgtcaacccgaaactccagccatccctcttcgtcagcctcctctgcaacgggaaacatctctatcaactggttctggttcgccgtctatggaatggggaatgccgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

377

Amino Acids

43.54

Weight (kDa)

9.22

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	147 - 310	6e-24	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018047)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25921
rosa_chinensis	RchiOBHm_Chr1g0316931 RchiOBHm_Chr3g0476451
rosa_multiflora	Rmu_sc0004138.1_g000004 Rmu_sc0007472.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330770
rosa_samantha	Rh1CG023000 Rh3CG227600
rosa_wichuraiana	Rw1G001690 Rw1G001700 Rw3G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	699
Acc36I	ACCTGC	1 cut(s)	348
AciI	CCGC	2 cut(s)	926, 1129
AclI	AACGTT	1 cut(s)	317
AclWI	GGATC	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	3 cut(s)	153, 377, 623
AgsI	TTSAA	7 cut(s)	167, 295, 532, 745, 758, 853, 979
AjnI	CCWGG	2 cut(s)	404, 520
AluBI	AGCT	8 cut(s)	71, 79, 302, 328, 659, 674, 797, 920
AluI	AGCT	8 cut(s)	71, 79, 302, 328, 659, 674, 797, 920
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	690
ApeKI	GCWGC	3 cut(s)	325, 797, 988
ApoI	RAATTY	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	518
AsuHPI	GGTGA	3 cut(s)	215, 494, 812
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	518
BbvI	GCAGC	3 cut(s)	337, 784, 975
BccI	CCATC	5 cut(s)	254, 728, 887, 945, 1054
BceAI	ACGGC	1 cut(s)	1092
BciT130I	CCWGG	2 cut(s)	406, 522
BclI	TGATCA	1 cut(s)	484
BfaI	CTAG	4 cut(s)	180, 308, 366, 999
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	5 cut(s)	326, 798, 927, 989, 1129
BlsI	GCNGC	5 cut(s)	327, 799, 928, 990, 1130
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	2 cut(s)	406, 522
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	2 cut(s)	406, 522
BmsI	GCATC	5 cut(s)	207, 376, 391, 760, 887
BmtI	GCTAGC	1 cut(s)	311
BpmI	CTGGAG	3 cut(s)	59, 427, 1025
Bpu10I	CCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	906, 977
BsaBI	GATNNNNATC	2 cut(s)	33, 489
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bse1I	ACTGG	2 cut(s)	579, 1098
Bse8I	GATNNNNATC	2 cut(s)	33, 489
BseBI	CCWGG	2 cut(s)	406, 522
BseGI	GGATG	5 cut(s)	222, 265, 406, 878, 1046
BseJI	GATNNNNATC	2 cut(s)	33, 489
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	579, 1098
BseRI	GAGGAG	2 cut(s)	959, 1055
BseXI	GCAGC	3 cut(s)	337, 784, 975
BseYI	CCCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	692
BsiSI	CCGG	1 cut(s)	187
BsmI	GAATGC	2 cut(s)	343, 1130
BsnI	GGCC	1 cut(s)	692
Bsp1407I	TGTACA	1 cut(s)	621
Bsp143I	GATC	2 cut(s)	28, 484
BspACI	CCGC	2 cut(s)	926, 1129
BspANI	GGCC	1 cut(s)	692
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	348
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	621
BsrI	ACTGG	2 cut(s)	579, 1098
BssMI	GATC	2 cut(s)	28, 484
Bst2UI	CCWGG	2 cut(s)	406, 522
Bst4CI	ACNGT	2 cut(s)	508, 1027
Bst6I	CTCTTC	1 cut(s)	1058
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstAUI	TGTACA	1 cut(s)	621
BstC8I	GCNNGC	2 cut(s)	309, 802
BstDEI	CTNAG	3 cut(s)	102, 171, 916
BstF5I	GGATG	5 cut(s)	222, 265, 406, 878, 1046
BstKTI	GATC	2 cut(s)	31, 487
BstMBI	GATC	2 cut(s)	28, 484
BstMWI	GCNNNNNNNGC	6 cut(s)	308, 331, 340, 711, 926, 1068
BstNI	CCWGG	2 cut(s)	406, 522
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	2 cut(s)	404, 520
BstV1I	GCAGC	3 cut(s)	337, 784, 975
BsuRI	GGCC	1 cut(s)	692
BtgZI	GCGATG	1 cut(s)	912
BtsCI	GGATG	5 cut(s)	222, 265, 406, 878, 1046
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	309, 802
Cfr13I	GGNCC	1 cut(s)	518
Csp6I	GTAC	3 cut(s)	152, 376, 622
CviAII	CATG	3 cut(s)	473, 619, 985
CviQI	GTAC	3 cut(s)	152, 376, 622
DdeI	CTNAG	3 cut(s)	102, 171, 916
DpnI	GATC	2 cut(s)	30, 486
DpnII	GATC	2 cut(s)	28, 484
DraI	TTTAAA	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	1058
EarI	CTCTTC	1 cut(s)	1058
Eco47I	GGWCC	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	404, 520
EcoT22I	ATGCAT	2 cut(s)	222, 464
FaeI	CATG	3 cut(s)	476, 622, 988
FatI	CATG	3 cut(s)	472, 618, 984
FauNDI	CATATG	1 cut(s)	806
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	5 cut(s)	326, 798, 927, 989, 1129
FokI	GGATG	5 cut(s)	229, 272, 413, 865, 1033
Fsp4HI	GCNGC	5 cut(s)	326, 798, 927, 989, 1129
FspBI	CTAG	4 cut(s)	180, 308, 366, 999
GluI	GCNGC	5 cut(s)	326, 798, 927, 989, 1129
GsaI	CCCAGC	1 cut(s)	75
GsuI	CTGGAG	3 cut(s)	59, 427, 1025
HaeIII	GGCC	1 cut(s)	692
HapII	CCGG	1 cut(s)	187
Hin1II	CATG	3 cut(s)	476, 622, 988
HincII	GTYRAC	2 cut(s)	363, 1030
HindII	GTYRAC	2 cut(s)	363, 1030
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	3 cut(s)	416, 635, 947
HpaI	GTTAAC	1 cut(s)	363
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	3 cut(s)	215, 494, 812
Hpy166II	GTNNAC	2 cut(s)	363, 1030
Hpy188I	TCNGA	1 cut(s)	946
Hpy188III	TCNNGA	5 cut(s)	38, 350, 383, 548, 758
Hpy8I	GTNNAC	2 cut(s)	363, 1030
HpyAV	CCTTC	5 cut(s)	153, 545, 593, 732, 854
HpyCH4III	ACNGT	2 cut(s)	508, 1027
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	8 cut(s)	220, 228, 343, 389, 424, 462, 904, 1071
HpyF10VI	GCNNNNNNNGC	6 cut(s)	308, 331, 340, 711, 926, 1068
HpyF3I	CTNAG	3 cut(s)	102, 171, 916
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	476, 622, 988
Ksp22I	TGATCA	1 cut(s)	484
KspAI	GTTAAC	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	28, 484
Lsp1109I	GCAGC	3 cut(s)	337, 784, 975
LweI	GCATC	5 cut(s)	207, 376, 391, 760, 887
MaeI	CTAG	4 cut(s)	180, 308, 366, 999
MaeII	ACGT	1 cut(s)	317
MalI	GATC	2 cut(s)	30, 486
MboI	GATC	2 cut(s)	28, 484
MboII	GAAGA	1 cut(s)	1045
MluCI	AATT	9 cut(s)	56, 137, 239, 527, 533, 578, 612, 886, 979
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	1 cut(s)	378
Mph1103I	ATGCAT	2 cut(s)	222, 464
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	4 cut(s)	135, 362, 372, 723
MspA1I	CMGCKG	1 cut(s)	1131
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	2 cut(s)	406, 522
Mva1269I	GAATGC	2 cut(s)	343, 1130
MvaI	CCWGG	2 cut(s)	406, 522
MwoI	GCNNNNNNNGC	6 cut(s)	308, 331, 340, 711, 926, 1068
NdeI	CATATG	1 cut(s)	806
NdeII	GATC	2 cut(s)	28, 484
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	3 cut(s)	476, 622, 988
NlaIV	GGNNCC	1 cut(s)	185
NsiI	ATGCAT	2 cut(s)	222, 464
NspI	RCATGY	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PctI	GAATGC	2 cut(s)	343, 1130
PdmI	GAANNNNTTC	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	416, 947
PkrI	GCNGC	5 cut(s)	327, 799, 928, 990, 1130
PleI	GAGTC	1 cut(s)	643
PpsI	GAGTC	1 cut(s)	643
PpuMI	RGGWCCY	1 cut(s)	518
PsiI	TTATAA	1 cut(s)	699
Psp1406I	AACGTT	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	404, 520
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	404, 520
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	518
PspPPI	RGGWCCY	1 cut(s)	518
PsrI	GAACNNNNNNTAC	2 cut(s)	564, 596
RsaI	GTAC	3 cut(s)	153, 377, 623
RsaNI	GTAC	3 cut(s)	152, 376, 622
SaqAI	TTAA	4 cut(s)	135, 362, 372, 723
SatI	GCNGC	5 cut(s)	326, 798, 927, 989, 1129
Sau3AI	GATC	2 cut(s)	28, 484
Sau96I	GGNCC	1 cut(s)	518
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	2 cut(s)	406, 522
SfaNI	GCATC	5 cut(s)	207, 376, 391, 760, 887
SinI	GGWCC	1 cut(s)	518
SmlI	CTYRAG	2 cut(s)	921, 992
SmoI	CTYRAG	2 cut(s)	921, 992
Sse9I	AATT	9 cut(s)	56, 137, 239, 527, 533, 578, 612, 886, 979
SsiI	CCGC	2 cut(s)	926, 1129
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	4 cut(s)	180, 308, 366, 999
StyD4I	CCNGG	2 cut(s)	404, 520
TaaI	ACNGT	2 cut(s)	508, 1027
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	3 cut(s)	351, 493, 785
TaqII	GACCGA	1 cut(s)	584
TasI	AATT	9 cut(s)	56, 137, 239, 527, 533, 578, 612, 886, 979
TatI	WGTACW	2 cut(s)	375, 621
TauI	GCSGC	2 cut(s)	929, 1131
TfiI	GAWTC	2 cut(s)	416, 947
Tru1I	TTAA	4 cut(s)	135, 362, 372, 723
Tru9I	TTAA	4 cut(s)	135, 362, 372, 723
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	3 cut(s)	325, 797, 988
TspDTI	ATGAA	4 cut(s)	680, 807, 828, 973
TspRI	CASTG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	415
XspI	CTAG	4 cut(s)	180, 308, 366, 999
ZrmI	AGTACT	1 cut(s)	377
Zsp2I	ATGCAT	2 cut(s)	222, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.