Rmu_sc0004222.1_g000001

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004222.1
OG0016497
Physical Location & Seq
Reverse (-)
1 .. 859
859 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
atgaatgctcatcttcttcctttgctctctcttcttcttcttcttattctgagcacaactagtgctcagcttcgagtcgatcattacagaaagacatgcccaaatgtcgaatcaattgtccatgccgcagttaaacagaagtttgagcatacatttacgactgcaccaggcactctcagactcttcttccacgattgtttcgtccggggttgtgatgcttcagtgatactagcttttaggaaccactcggcggagaaggataacccggacgatatgtcactcgccggagacgggtttgacacggtgatcaaagccaaggccgctgttgatagagtggctggatgcaggaacaaggtttcttgtgctgacattcttgccatggccacaagagatgtcgtatcactg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

135

Amino Acids

14.75

Weight (kDa)

7.7

Isoelectric Point (pI)

29.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 40 - 134 4.2e-25 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016497)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36870
malus_domestica MD15G1108300.v1.1
prunus_persica Prupe.1G460600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304911
rosa_laevigata RLG00000010939
rosa_multiflora Rmu_sc0000301.1_g000011 Rmu_sc0004222.1_g000001
rosa_roxburghii Rroxscaffold_7G00163350
rosa_rugosa Rorug06G0336200
rosa_samantha Rh6AG447500 Rh6BG454000 Rh6CG461000 Rh6DG448000
rosa_wichuraiana Rw6G038960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 126, 251, 321
AcoI YGGCCR 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 250, 291
AhdI GACNNNNNGTC 1 cut(s) 274
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 2 cut(s) 70, 233
AluI AGCT 2 cut(s) 70, 233
Alw21I GWGCWC 2 cut(s) 56, 67
Alw26I GTCTC 1 cut(s) 282
AoxI GGCC 2 cut(s) 318, 381
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AsuC2I CCSGG 2 cut(s) 206, 266
AsuHPI GGTGA 1 cut(s) 316
BalI TGGCCA 1 cut(s) 383
Bbv12I GWGCWC 2 cut(s) 56, 67
BciT130I CCWGG 1 cut(s) 168
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 2 cut(s) 206, 266
BcoDI GTCTC 1 cut(s) 282
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 2 cut(s) 60, 230
BisI GCNGC 2 cut(s) 126, 321
BlpI GCTNAGC 1 cut(s) 66
BlsI GCNGC 2 cut(s) 127, 322
Bme1390I CCNGG 3 cut(s) 168, 206, 266
BmeRI GACNNNNNGTC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 3 cut(s) 168, 206, 266
BmsI GCATC 2 cut(s) 205, 332
Bpu1102I GCTNAGC 1 cut(s) 66
BpuMI CCSGG 2 cut(s) 206, 266
BsaJI CCNNGG 3 cut(s) 205, 315, 378
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 291
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 205, 315, 378
BseGI GGATG 1 cut(s) 347
BseLI CCNNNNNNNGG 2 cut(s) 250, 291
BseMII CTCAG 3 cut(s) 41, 80, 190
BsgI GTGCAG 1 cut(s) 147
BshFI GGCC 2 cut(s) 320, 383
BsiHKAI GWGCWC 2 cut(s) 56, 67
BsiSI CCGG 3 cut(s) 205, 266, 285
BslI CCNNNNNNNGG 2 cut(s) 250, 291
BsmAI GTCTC 1 cut(s) 282
BsmBI CGTCTC 1 cut(s) 282
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 320, 383
Bsp1286I GDGCHC 2 cut(s) 56, 67
Bsp143I GATC 2 cut(s) 79, 306
Bsp1720I GCTNAGC 1 cut(s) 66
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 3 cut(s) 126, 251, 321
BspANI GGCC 2 cut(s) 320, 383
BspCNI CTCAG 3 cut(s) 42, 79, 189
BspLI GGNNCC 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 205, 315, 378
BssMI GATC 2 cut(s) 79, 306
BssT1I CCWWGG 2 cut(s) 315, 378
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 2 cut(s) 36, 188
BstDEI CTNAG 3 cut(s) 50, 66, 176
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 347
BstKTI GATC 2 cut(s) 82, 309
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 2 cut(s) 79, 306
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNI CCWGG 1 cut(s) 168
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 3 cut(s) 166, 204, 264
BsuRI GGCC 2 cut(s) 320, 383
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 347
BtsIMutI CAGTG 2 cut(s) 228, 401
CviAII CATG 3 cut(s) 96, 122, 379
CviJI RGCY 6 cut(s) 70, 233, 314, 320, 338, 383
CviKI_1 RGCY 6 cut(s) 70, 233, 314, 320, 338, 383
DdeI CTNAG 3 cut(s) 50, 66, 176
DpnI GATC 2 cut(s) 81, 308
DpnII GATC 2 cut(s) 79, 306
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 36, 188
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 2 cut(s) 36, 188
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 315, 378
Eco57I CTGAAG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 315, 378
ErhI CCWWGG 2 cut(s) 315, 378
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 3 cut(s) 99, 125, 382
FaiI YATR 5 cut(s) 97, 123, 150, 275, 380
FatI CATG 3 cut(s) 95, 121, 378
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 126, 321
FokI GGATG 1 cut(s) 354
Fsp4HI GCNGC 2 cut(s) 126, 321
FspBI CTAG 2 cut(s) 60, 230
GluI GCNGC 2 cut(s) 126, 321
HaeIII GGCC 2 cut(s) 320, 383
HapII CCGG 3 cut(s) 205, 266, 285
Hin1II CATG 3 cut(s) 99, 125, 382
HinfI GANTC 3 cut(s) 75, 110, 180
HpaII CCGG 3 cut(s) 205, 266, 285
HphI GGTGA 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 51, 179
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 164, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 3 cut(s) 50, 66, 176
Hsp92II CATG 3 cut(s) 99, 125, 382
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 2 cut(s) 79, 306
LpnPI CCDG 7 cut(s) 153, 180, 218, 279, 298, 324, 331
LweI GCATC 2 cut(s) 205, 332
MaeI CTAG 2 cut(s) 60, 230
MaeIII GTNAC 1 cut(s) 276
MalI GATC 2 cut(s) 81, 308
MboI GATC 2 cut(s) 79, 306
MboII GAAGA 8 cut(s) 5, 8, 23, 26, 29, 32, 175, 178
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 2 cut(s) 56, 67
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 1 cut(s) 114
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 84, 174
Mox20I TGGCCA 1 cut(s) 383
MscI TGGCCA 1 cut(s) 383
MseI TTAA 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 3 cut(s) 205, 266, 285
MspR9I CCNGG 3 cut(s) 168, 206, 266
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 320
NciI CCSGG 2 cut(s) 206, 266
NcoI CCATGG 1 cut(s) 378
NdeII GATC 2 cut(s) 79, 306
NlaIII CATG 3 cut(s) 99, 125, 382
NlaIV GGNNCC 1 cut(s) 242
NmeAIII GCCGAG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 276
NspI RCATGY 1 cut(s) 99
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 127, 322
PleI GAGTC 2 cut(s) 83, 174
PpsI GAGTC 2 cut(s) 83, 174
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 126, 321
Sau3AI GATC 2 cut(s) 79, 306
SchI GAGTC 2 cut(s) 84, 174
ScrFI CCNGG 3 cut(s) 168, 206, 266
SduI GDGCHC 2 cut(s) 56, 67
SetI ASST 3 cut(s) 72, 235, 357
SfaNI GCATC 2 cut(s) 205, 332
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 1 cut(s) 114
SsiI CCGC 3 cut(s) 126, 251, 321
SspMI CTAG 2 cut(s) 60, 230
StyD4I CCNGG 3 cut(s) 166, 204, 264
StyI CCWWGG 2 cut(s) 315, 378
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 3 cut(s) 73, 78, 108
TasI AATT 1 cut(s) 114
TauI GCSGC 2 cut(s) 128, 323
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 276
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 228
XceI RCATGY 1 cut(s) 99
XspI CTAG 2 cut(s) 60, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.