Rmu_sc0004239.1_g000021

R3H domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004239.1
OG0008327
Physical Location & Seq
Forward (+)
80080 .. 85192
5113 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1239 bp
atggagggctctgtggcggacgatctcggagccccggagtcatgggaggtcgccggtgtggacgaggctatgagccgcctgatgctctcctccaacaaggacaccaatccccagcaagacctcaacgacgcgtcgtctttggtttcctccgtttctgatggagctggtggcgataagctctctgaggacgccctcaatcaggtcgaccagttccttcgcgaggctttgcaaaaccctcgggagcgcctatcaattttacgaatggagcaagatgttgaaaagtttatccgtgatcctattcagcagcaactggagtttcagcagttgcccacttcttatttacgcttggctgcacaccgtgtagctcagcattatgcacttcagtcaatggttttgttagataataacttgcctgatggctctggttccagaattattgttcgcaaaactccggagtgtcgacttcctttgattcggcttgcagacatgcctgttagtttgccgtcagaagaaagtggtgtcactaaagttgcaataaaacagaggccccagaaacggtcacagatggccaacagtgcagactcaaattcatcaaatcggccccggcatgagaaccaaggtgggttgagatggatcaattcaaaggacaccaacaacaatcgcaacatccattccccccaatccttggtttcaacggaagcttcttccatttatgatagaatgagcttcaaaagtttgtgctctgcttggatgaaggctttgccaaccaccttagagaaagataattcagatagtgatgatgcgtggggtggtacagcaactccagatagttctgatatggtagagagggtggaagaggaacaggtggtggaggtcaaagatatgaatatggacaatcttctgtggatggaggattccaatttacctgtgaaggtaattttgatcatgccacccaagatgaagaccacagacggaataggtggtggaggtgaaagatatgaatatggacaatgttctgtggatggaggattccaatttacctgtgaaggtaattttgatcatgccacccaagatgaagaccacggagtgagaacagctggtcatggtgctcaagagaagacacgatatgggaggaggactagaggtgcaactgatagtcaaagtaccccatctgatatttcttcaattgccttaagttttgactctatcagtttagacacaatatgggaggaggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 ko03015 ko05164 map03010 map03015 map05164
Pfam Domains
Protein Families
R3H SUZ

Protein Analysis

412

Amino Acids

45.62

Weight (kDa)

4.71

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
R3H PF01424 85 - 130 9.6e-08 R3H domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 685
AccI GTMKAC 2 cut(s) 204, 460
AccII CGCG 2 cut(s) 131, 219
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 2 cut(s) 17, 76
AclWI GGATC 2 cut(s) 287, 641
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 189
AdeI CACNNNGTG 2 cut(s) 359, 1087
AfaI GTAC 2 cut(s) 814, 1165
AfiI CCNNNNNNNGG 4 cut(s) 199, 220, 555, 685
AflII CTTAAG 1 cut(s) 1192
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 5 cut(s) 278, 642, 693, 730, 1185
AhdI GACNNNNNGTC 1 cut(s) 133
AluBI AGCT 6 cut(s) 164, 178, 365, 701, 726, 1097
AluI AGCT 6 cut(s) 164, 178, 365, 701, 726, 1097
Alw21I GWGCWC 2 cut(s) 743, 1111
AlwI GGATC 2 cut(s) 287, 641
AlwNI CAGNNNCTG 1 cut(s) 310
Ama87I CYCGRG 1 cut(s) 237
Aor13HI TCCGGA 1 cut(s) 451
AoxI GGCC 3 cut(s) 545, 567, 599
ApeKI GCWGC 2 cut(s) 304, 350
ApoI RAATTY 1 cut(s) 586
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 546, 600
AsuC2I CCSGG 2 cut(s) 35, 604
AsuHPI GGTGA 1 cut(s) 1001
AvaI CYCGRG 1 cut(s) 237
BalI TGGCCA 1 cut(s) 569
BanII GRGCYC 2 cut(s) 11, 34
BbsI GAAGAC 3 cut(s) 968, 1083, 1124
Bbv12I GWGCWC 2 cut(s) 743, 1111
BbvI GCAGC 2 cut(s) 316, 337
BccI CCATC 7 cut(s) 152, 410, 559, 624, 901, 1016, 1177
BceAI ACGGC 1 cut(s) 487
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BclI TGATCA 2 cut(s) 942, 1057
BcnI CCSGG 2 cut(s) 35, 604
BfaI CTAG 2 cut(s) 1140, 1237
BfoI RGCGCY 1 cut(s) 247
BfrI CTTAAG 1 cut(s) 1192
BisI GCNGC 3 cut(s) 76, 305, 351
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 3 cut(s) 77, 306, 352
Bme1390I CCNGG 2 cut(s) 35, 604
BmeRI GACNNNNNGTC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 2 cut(s) 546, 600
BmiI GGNNCC 4 cut(s) 31, 427, 548, 602
BmrFI CCNGG 2 cut(s) 35, 604
BmsI GCATC 2 cut(s) 72, 790
BpiI GAAGAC 3 cut(s) 968, 1083, 1124
BpmI CTGGAG 2 cut(s) 332, 807
Bpu1102I GCTNAGC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 1095
BpuMI CCSGG 2 cut(s) 35, 604
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 6 cut(s) 33, 236, 602, 616, 684, 1081
BsaWI WCCGGW 1 cut(s) 451
BsaXI ACNNNNNCTCC 2 cut(s) 805, 835
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 220, 555, 685
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 208, 315
BseAI TCCGGA 1 cut(s) 451
BseDI CCNNGG 6 cut(s) 33, 236, 602, 616, 684, 1081
BseGI GGATG 4 cut(s) 666, 756, 912, 1027
BseLI CCNNNNNNNGG 4 cut(s) 199, 220, 555, 685
BseMII CTCAG 2 cut(s) 174, 380
BseNI ACTGG 2 cut(s) 208, 315
BseRI GAGGAG 2 cut(s) 79, 1147
BseXI GCAGC 2 cut(s) 316, 337
BseYI CCCAGC 1 cut(s) 111
BsgI GTGCAG 2 cut(s) 336, 597
Bsh1236I CGCG 2 cut(s) 131, 219
BshFI GGCC 3 cut(s) 547, 569, 601
BsiHKAI GWGCWC 2 cut(s) 743, 1111
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 4 cut(s) 35, 54, 452, 604
BslI CCNNNNNNNGG 4 cut(s) 199, 220, 555, 685
BsnI GGCC 3 cut(s) 547, 569, 601
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 4 cut(s) 11, 34, 743, 1111
Bsp13I TCCGGA 1 cut(s) 451
Bsp143I GATC 5 cut(s) 22, 292, 633, 942, 1057
Bsp1720I GCTNAGC 1 cut(s) 366
Bsp68I TCGCGA 1 cut(s) 219
BspACI CCGC 2 cut(s) 17, 76
BspANI GGCC 3 cut(s) 547, 569, 601
BspCNI CTCAG 2 cut(s) 175, 379
BspEI TCCGGA 1 cut(s) 451
BspFNI CGCG 2 cut(s) 131, 219
BspLI GGNNCC 4 cut(s) 31, 427, 548, 602
BspPI GGATC 2 cut(s) 287, 641
BspTI CTTAAG 1 cut(s) 1192
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 2 cut(s) 208, 315
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 6 cut(s) 33, 236, 602, 616, 684, 1081
BssMI GATC 5 cut(s) 22, 292, 633, 942, 1057
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 2 cut(s) 616, 684
Bst4CI ACNGT 3 cut(s) 359, 558, 575
Bst6I CTCTTC 1 cut(s) 849
BstACI GRCGYC 1 cut(s) 189
BstAFI CTTAAG 1 cut(s) 1192
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 183, 366, 772
BstDSI CCRYGG 1 cut(s) 1081
BstENI CCTNNNNNAGG 2 cut(s) 197, 218
BstF5I GGATG 4 cut(s) 666, 756, 912, 1027
BstFNI CGCG 2 cut(s) 131, 219
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 5 cut(s) 25, 295, 636, 945, 1060
BstMBI GATC 5 cut(s) 22, 292, 633, 942, 1057
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNSI RCATGY 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 33, 602
BstUI CGCG 2 cut(s) 131, 219
BstV1I GCAGC 2 cut(s) 316, 337
BstV2I GAAGAC 3 cut(s) 968, 1083, 1124
BsuRI GGCC 3 cut(s) 547, 569, 601
BtgI CCRYGG 1 cut(s) 1081
BtsCI GGATG 4 cut(s) 666, 756, 912, 1027
BtsIMutI CAGTG 1 cut(s) 580
BtuMI TCGCGA 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 480
CaiI CAGNNNCTG 1 cut(s) 310
CfoI GCGC 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 546, 600
CseI GACGC 3 cut(s) 120, 137, 197
Csp6I GTAC 2 cut(s) 813, 1164
CviAII CATG 6 cut(s) 42, 487, 608, 946, 1061, 1103
CviQI GTAC 2 cut(s) 813, 1164
DdeI CTNAG 3 cut(s) 183, 366, 772
DpnI GATC 5 cut(s) 24, 294, 635, 944, 1059
DpnII GATC 5 cut(s) 22, 292, 633, 942, 1057
DraIII CACNNNGTG 2 cut(s) 359, 1087
DriI GACNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 1 cut(s) 849
Eam1105I GACNNNNNGTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 849
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 616, 684
Eco24I GRGCYC 2 cut(s) 11, 34
Eco57I CTGAAG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 237
EcoNI CCTNNNNNAGG 2 cut(s) 197, 218
EcoO109I RGGNCCY 1 cut(s) 546
EcoT14I CCWWGG 2 cut(s) 616, 684
EcoT38I GRGCYC 2 cut(s) 11, 34
ErhI CCWWGG 2 cut(s) 616, 684
FaeI CATG 6 cut(s) 45, 490, 611, 949, 1064, 1106
FatI CATG 6 cut(s) 41, 486, 607, 945, 1060, 1102
FbaI TGATCA 2 cut(s) 942, 1057
FblI GTMKAC 2 cut(s) 204, 460
Fnu4HI GCNGC 3 cut(s) 76, 305, 351
FokI GGATG 4 cut(s) 653, 763, 919, 1034
FriOI GRGCYC 2 cut(s) 11, 34
Fsp4HI GCNGC 3 cut(s) 76, 305, 351
FspBI CTAG 2 cut(s) 1140, 1237
GlaI GCGC 1 cut(s) 245
GluI GCNGC 3 cut(s) 76, 305, 351
GsaI CCCAGC 1 cut(s) 115
GsuI CTGGAG 2 cut(s) 332, 807
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 3 cut(s) 547, 569, 601
HapII CCGG 4 cut(s) 35, 54, 452, 604
HgaI GACGC 3 cut(s) 120, 137, 197
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 6 cut(s) 45, 490, 611, 949, 1064, 1106
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 2 cut(s) 205, 461
HindII GTYRAC 2 cut(s) 205, 461
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 6 cut(s) 38, 472, 581, 914, 1029, 1202
HpaII CCGG 4 cut(s) 35, 54, 452, 604
HphI GGTGA 1 cut(s) 1001
Hpy166II GTNNAC 3 cut(s) 61, 205, 461
Hpy188I TCNGA 7 cut(s) 29, 157, 184, 508, 790, 835, 1174
Hpy188III TCNNGA 6 cut(s) 218, 239, 429, 452, 824, 1112
Hpy8I GTNNAC 3 cut(s) 61, 205, 461
Hpy99I CGWCG 2 cut(s) 131, 136
HpyAV CCTTC 4 cut(s) 224, 748, 925, 1040
HpyCH4III ACNGT 3 cut(s) 359, 558, 575
HpyCH4V TGCA 7 cut(s) 229, 353, 377, 482, 533, 578, 1148
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 3 cut(s) 183, 366, 772
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 6 cut(s) 45, 490, 611, 949, 1064, 1106
HspAI GCGC 1 cut(s) 244
Kpn2I TCCGGA 1 cut(s) 451
Ksp22I TGATCA 2 cut(s) 942, 1057
Kzo9I GATC 5 cut(s) 22, 292, 633, 942, 1057
LmnI GCTCC 4 cut(s) 29, 161, 241, 265
Lsp1109I GCAGC 2 cut(s) 316, 337
LweI GCATC 2 cut(s) 72, 790
MaeI CTAG 2 cut(s) 1140, 1237
MaeIII GTNAC 2 cut(s) 520, 558
MalI GATC 5 cut(s) 24, 294, 635, 944, 1059
MboI GATC 5 cut(s) 22, 292, 633, 942, 1057
MboII GAAGA 8 cut(s) 521, 696, 866, 890, 973, 1088, 1129, 1173
MfeI CAATTG 1 cut(s) 1185
MhlI GDGCHC 4 cut(s) 11, 34, 743, 1111
MlsI TGGCCA 1 cut(s) 569
MluI ACGCGT 1 cut(s) 129
MluNI TGGCCA 1 cut(s) 569
MlyI GAGTC 3 cut(s) 47, 575, 1196
MmeI TCCRAC 1 cut(s) 117
Mox20I TGGCCA 1 cut(s) 569
MroI TCCGGA 1 cut(s) 451
MscI TGGCCA 1 cut(s) 569
MseI TTAA 1 cut(s) 1193
Msp20I TGGCCA 1 cut(s) 569
MspA1I CMGCKG 1 cut(s) 1097
MspCI CTTAAG 1 cut(s) 1192
MspI CCGG 4 cut(s) 35, 54, 452, 604
MspR9I CCNGG 2 cut(s) 35, 604
MunI CAATTG 1 cut(s) 1185
MvnI CGCG 2 cut(s) 131, 219
MwoI GCNNNNNNNGC 1 cut(s) 575
NciI CCSGG 2 cut(s) 35, 604
NdeII GATC 5 cut(s) 22, 292, 633, 942, 1057
NlaIII CATG 6 cut(s) 45, 490, 611, 949, 1064, 1106
NlaIV GGNNCC 4 cut(s) 31, 427, 548, 602
NmuCI GTSAC 2 cut(s) 520, 558
NruI TCGCGA 1 cut(s) 219
NspI RCATGY 1 cut(s) 490
PfeI GAWTC 3 cut(s) 472, 914, 1029
PflMI CCANNNNNTGG 1 cut(s) 685
PkrI GCNGC 3 cut(s) 77, 306, 352
PleI GAGTC 3 cut(s) 46, 575, 1196
PpsI GAGTC 3 cut(s) 46, 575, 1196
PspFI CCCAGC 1 cut(s) 111
PspN4I GGNNCC 4 cut(s) 31, 427, 548, 602
PspPI GGNCC 2 cut(s) 546, 600
PstNI CAGNNNCTG 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 1097
RruI TCGCGA 1 cut(s) 219
RsaI GTAC 2 cut(s) 814, 1165
RsaNI GTAC 2 cut(s) 813, 1164
SalI GTCGAC 2 cut(s) 203, 459
SaqAI TTAA 1 cut(s) 1193
SatI GCNGC 3 cut(s) 76, 305, 351
Sau3AI GATC 5 cut(s) 22, 292, 633, 942, 1057
Sau96I GGNCC 2 cut(s) 546, 600
SchI GAGTC 3 cut(s) 47, 575, 1196
ScrFI CCNGG 2 cut(s) 35, 604
SduI GDGCHC 4 cut(s) 11, 34, 743, 1111
SfaNI GCATC 2 cut(s) 72, 790
SgrAI CRCCGGYG 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 1110, 1192
SmoI CTYRAG 2 cut(s) 1110, 1192
SsiI CCGC 2 cut(s) 17, 76
SspMI CTAG 2 cut(s) 1140, 1237
StyD4I CCNGG 2 cut(s) 33, 602
StyI CCWWGG 2 cut(s) 616, 684
TaaI ACNGT 3 cut(s) 359, 558, 575
TaqI TCGA 2 cut(s) 204, 460
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 3 cut(s) 472, 914, 1029
Tru1I TTAA 1 cut(s) 1193
Tru9I TTAA 1 cut(s) 1193
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 2 cut(s) 520, 558
TseI GCWGC 2 cut(s) 304, 350
Tsp45I GTSAC 2 cut(s) 520, 558
TspDTI ATGAA 6 cut(s) 579, 767, 899, 974, 1014, 1089
TspGWI ACGGA 5 cut(s) 139, 278, 710, 987, 1098
TspRI CASTG 1 cut(s) 580
Van91I CCANNNNNTGG 1 cut(s) 685
Vha464I CTTAAG 1 cut(s) 1192
XagI CCTNNNNNAGG 2 cut(s) 197, 218
XapI RAATTY 1 cut(s) 586
XceI RCATGY 1 cut(s) 490
XmiI GTMKAC 2 cut(s) 204, 460
XspI CTAG 2 cut(s) 1140, 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.