Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004284.1

Orthogroup ID

OG0015775

Physical Location & Seq

Genomic Coordinates Forward (+)

8164 .. 14075

Gene Structure 5912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggctcctcccagtcttctcggtcctcccgagctccacaaatcctcacccaccaccaccgctccgccgccacccgaacccgaatccaaaccccaaggcctggaactggaaagtccgacaaggaaggcttccatatggctgcgttttggctccacaagcaccaccccaaaactcgcttgcaacctcgcgtccttctccgagttcggttacttcaaggacctgccggagatcgtgtaccggcttctggagagcgaggacgtgaggaagaaacagaaggcggagtggcgggagaggaaatgcaccgggaggcaggaagcgacgggaatccggatccgacggcgaaaccgggtcgagctccgagaagaagagaatcagaagaaagagaggaaaatggagagtgaagaagacgattcagtgagcgaggttctcagagatcgattcagactctccaccatctctatcgccgatgccgaagatagatggcaaaagttcagtgacatgtatcttgacaaggaaatattagacttccttgccaagtatgcatacgagtttctggtacatggtgtcgatgtggaagggaaaaaattcgagctagctgctactgcttcggtcctccaagccctaatcaaaggcggcttcaaattctgccctctaattcaagccgccacaatccccttactatgcagcttcaaggacgtcggcgccgccaccggctcaggcaaaaccctcgccttagtgatcccactcgtcgagatcctccaccgcacttctaccctcaccaggtctgattcaaactcaaagccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003727 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008187 GO:0008266 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

268

Amino Acids

30.2

Weight (kDa)

8.25

Isoelectric Point (pI)

53.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2828	PF11443	63 - 135	3.6e-07	Domain of unknown function (DUF2828)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015775)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029583 RLG00000029632 RLG00000031683
rosa_multiflora	Rmu_sc0000670.1_g000015 Rmu_sc0004284.1_g000002
rosa_roxburghii	Rroxscaffold_1G00004070 Rroxscaffold_3G00225670
rosa_samantha	Rh2BG087600 Rh2BG143500 Rh2BG172700 Rh3BG259600 Rh4DG167300 Rh5BG514500 Rh5BG535900 Rh5CG538100 Rh6AG162500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	699
Acc36I	ACCTGC	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	701
AccB7I	CCANNNNNTGG	1 cut(s)	100
AccBSI	CCGCTC	1 cut(s)	62
AccII	CGCG	1 cut(s)	188
AccIII	TCCGGA	1 cut(s)	327
AciI	CCGC	9 cut(s)	60, 65, 68, 278, 286, 633, 663, 705, 763
AclWI	GGATC	4 cut(s)	325, 338, 733, 748
AcsI	RAATTY	2 cut(s)	584, 641
AcyI	GRCGYC	2 cut(s)	696, 702
AfaI	GTAC	2 cut(s)	236, 558
AfiI	CCNNNNNNNGG	4 cut(s)	100, 106, 244, 780
AflIII	ACRYGT	1 cut(s)	498
AgsI	TTSAA	5 cut(s)	214, 640, 659, 691, 792
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	99, 779
AluBI	AGCT	5 cut(s)	34, 355, 592, 596, 687
AluI	AGCT	5 cut(s)	34, 355, 592, 596, 687
Alw21I	GWGCWC	2 cut(s)	36, 357
AlwI	GGATC	4 cut(s)	325, 338, 733, 748
Ama87I	CYCGRG	1 cut(s)	29
Aor13HI	TCCGGA	1 cut(s)	327
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	3 cut(s)	139, 596, 684
ApoI	RAATTY	2 cut(s)	584, 641
Asp700I	GAANNNNTTC	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	704
AspS9I	GGNCC	3 cut(s)	23, 217, 610
AsuC2I	CCSGG	2 cut(s)	304, 347
AsuHPI	GGTGA	2 cut(s)	39, 769
AsuNHI	GCTAGC	1 cut(s)	592
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	3 cut(s)	23, 217, 610
BamHI	GGATCC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	2 cut(s)	36, 357
BbsI	GAAGAC	2 cut(s)	8, 411
Bbv12I	GWGCWC	2 cut(s)	36, 357
BbvI	GCAGC	3 cut(s)	126, 583, 696
BccI	CCATC	2 cut(s)	461, 474
BceAI	ACGGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	4 cut(s)	578, 612, 709, 743
BciT130I	CCWGG	2 cut(s)	101, 781
BcnI	CCSGG	2 cut(s)	304, 347
BfaI	CTAG	1 cut(s)	593
BfoI	RGCGCY	1 cut(s)	705
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	7 cut(s)	68, 140, 597, 634, 663, 685, 705
BlsI	GCNGC	7 cut(s)	69, 141, 598, 635, 664, 686, 706
Bme1390I	CCNGG	4 cut(s)	101, 304, 347, 781
Bme18I	GGWCC	3 cut(s)	23, 217, 610
BmeT110I	CYCGRG	1 cut(s)	29
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	3 cut(s)	23, 217, 610
BmiI	GGNNCC	4 cut(s)	6, 151, 332, 703
BmrFI	CCNGG	4 cut(s)	101, 304, 347, 781
BmrI	ACTGGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	457
BmtI	GCTAGC	1 cut(s)	596
BmuI	ACTGGG	1 cut(s)	6
BpiI	GAAGAC	2 cut(s)	8, 411
BpmI	CTGGAG	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	715
BpuMI	CCSGG	2 cut(s)	304, 347
Bsa29I	ATCGAT	1 cut(s)	436
BsaHI	GRCGYC	2 cut(s)	696, 702
BsaJI	CCNNGG	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 218, 248
Bsc4I	CCNNNNNNNGG	4 cut(s)	100, 106, 244, 780
Bse118I	RCCGGY	2 cut(s)	237, 710
Bse1I	ACTGG	2 cut(s)	12, 111
BseAI	TCCGGA	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	101, 781
BseCI	ATCGAT	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	4 cut(s)	100, 106, 244, 780
BseMII	CTCAG	2 cut(s)	442, 729
BseNI	ACTGG	2 cut(s)	12, 111
BseXI	GCAGC	3 cut(s)	126, 583, 696
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	701
BshVI	ATCGAT	1 cut(s)	436
BsiHKAI	GWGCWC	2 cut(s)	36, 357
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	6 cut(s)	224, 238, 303, 328, 346, 711
BslI	CCNNNNNNNGG	4 cut(s)	100, 106, 244, 780
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	36, 357
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	5 cut(s)	228, 330, 433, 738, 753
BspACI	CCGC	9 cut(s)	60, 65, 68, 278, 286, 633, 663, 705, 763
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	441, 728
BspDI	ATCGAT	1 cut(s)	436
BspEI	TCCGGA	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	4 cut(s)	6, 151, 332, 703
BspMI	ACCTGC	1 cut(s)	228
BspOI	GCTAGC	1 cut(s)	596
BspPI	GGATC	4 cut(s)	325, 338, 733, 748
BspT107I	GGYRCC	1 cut(s)	701
BsrBI	CCGCTC	1 cut(s)	62
BsrFI	RCCGGY	2 cut(s)	237, 710
BsrI	ACTGG	2 cut(s)	12, 111
BssAI	RCCGGY	2 cut(s)	237, 710
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	5 cut(s)	228, 330, 433, 738, 753
BssNI	GRCGYC	2 cut(s)	696, 702
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	101, 781
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	2 cut(s)	696, 702
BstC8I	GCNNGC	2 cut(s)	178, 594
BstDEI	CTNAG	3 cut(s)	428, 715, 733
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	1 cut(s)	705
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	5 cut(s)	231, 333, 436, 741, 756
BstMBI	GATC	5 cut(s)	228, 330, 433, 738, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 539, 602
BstNI	CCWGG	2 cut(s)	101, 781
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	4 cut(s)	99, 302, 345, 779
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	126, 583, 696
BstV2I	GAAGAC	2 cut(s)	8, 411
BstX2I	RGATCY	2 cut(s)	330, 753
BstYI	RGATCY	2 cut(s)	330, 753
Bsu15I	ATCGAT	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	436
BtrI	CACGTC	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	420, 499
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	178, 594
CfoI	GCGC	1 cut(s)	704
Cfr10I	RCCGGY	2 cut(s)	237, 710
Cfr13I	GGNCC	3 cut(s)	23, 217, 610
ClaI	ATCGAT	1 cut(s)	436
CseI	GACGC	1 cut(s)	177
CsiI	ACCWGGT	1 cut(s)	779
Csp6I	GTAC	2 cut(s)	235, 557
CviAII	CATG	2 cut(s)	499, 560
CviQI	GTAC	2 cut(s)	235, 557
DdeI	CTNAG	3 cut(s)	428, 715, 733
DinI	GGCGCC	1 cut(s)	703
DpnI	GATC	5 cut(s)	230, 332, 435, 740, 755
DpnII	GATC	5 cut(s)	228, 330, 433, 738, 753
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
EciI	GGCGGA	2 cut(s)	54, 293
Ecl136II	GAGCTC	2 cut(s)	34, 355
Eco130I	CCWWGG	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	99
Eco24I	GRGCYC	2 cut(s)	36, 357
Eco47I	GGWCC	3 cut(s)	23, 217, 610
Eco53kI	GAGCTC	2 cut(s)	34, 355
Eco88I	CYCGRG	1 cut(s)	29
EcoICRI	GAGCTC	2 cut(s)	34, 355
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	99, 779
EcoT14I	CCWWGG	1 cut(s)	94
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	2 cut(s)	36, 357
EgeI	GGCGCC	1 cut(s)	703
EheI	GGCGCC	1 cut(s)	703
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	2 cut(s)	502, 563
FaiI	YATR	7 cut(s)	134, 136, 500, 540, 544, 561, 682
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FatI	CATG	2 cut(s)	498, 559
FauI	CCCGC	1 cut(s)	279
FauNDI	CATATG	1 cut(s)	134
Fnu4HI	GCNGC	7 cut(s)	68, 140, 597, 634, 663, 685, 705
FriOI	GRGCYC	2 cut(s)	36, 357
Fsp4HI	GCNGC	7 cut(s)	68, 140, 597, 634, 663, 685, 705
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	7 cut(s)	68, 140, 597, 634, 663, 685, 705
GsuI	CTGGAG	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	705
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	6 cut(s)	224, 238, 303, 328, 346, 711
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	1 cut(s)	704
Hin1I	GRCGYC	2 cut(s)	696, 702
Hin1II	CATG	2 cut(s)	502, 563
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HinfI	GANTC	7 cut(s)	83, 324, 370, 410, 438, 444, 788
HpaII	CCGG	6 cut(s)	224, 238, 303, 328, 346, 711
HphI	GGTGA	2 cut(s)	39, 769
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	8 cut(s)	117, 199, 335, 359, 375, 431, 443, 787
Hpy188III	TCNNGA	5 cut(s)	29, 245, 328, 506, 751
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	4 cut(s)	322, 339, 701, 752
HpyAV	CCTTC	4 cut(s)	118, 202, 268, 569
HpyCH4IV	ACGT	2 cut(s)	258, 696
HpyCH4V	TGCA	4 cut(s)	180, 300, 542, 684
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 539, 602
HpyF3I	CTNAG	3 cut(s)	428, 715, 733
HpySE526I	ACGT	2 cut(s)	258, 696
Hsp92I	GRCGYC	2 cut(s)	696, 702
Hsp92II	CATG	2 cut(s)	502, 563
HspAI	GCGC	1 cut(s)	702
KasI	GGCGCC	1 cut(s)	701
Kpn2I	TCCGGA	1 cut(s)	327
Kzo9I	GATC	5 cut(s)	228, 330, 433, 738, 753
LmnI	GCTCC	5 cut(s)	10, 39, 67, 155, 360
Lsp1109I	GCAGC	3 cut(s)	126, 583, 696
LweI	GCATC	1 cut(s)	457
MabI	ACCWGGT	1 cut(s)	779
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	2 cut(s)	258, 696
MaeIII	GTNAC	2 cut(s)	206, 494
MalI	GATC	5 cut(s)	230, 332, 435, 740, 755
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	5 cut(s)	228, 330, 433, 738, 753
MboII	GAAGA	8 cut(s)	8, 277, 374, 377, 388, 413, 416, 485
MflI	RGATCY	2 cut(s)	330, 753
MhlI	GDGCHC	2 cut(s)	36, 357
MluCI	AATT	3 cut(s)	584, 641, 654
Mly113I	GGCGCC	1 cut(s)	702
MlyI	GAGTC	1 cut(s)	438
MmeI	TCCRAC	2 cut(s)	140, 358
Mph1103I	ATGCAT	1 cut(s)	544
MroI	TCCGGA	1 cut(s)	327
MroXI	GAANNNNTTC	1 cut(s)	584
MspI	CCGG	6 cut(s)	224, 238, 303, 328, 346, 711
MspR9I	CCNGG	4 cut(s)	101, 304, 347, 781
MvaI	CCWGG	2 cut(s)	101, 781
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	156, 539, 602
NarI	GGCGCC	1 cut(s)	702
NciI	CCSGG	2 cut(s)	304, 347
NdeI	CATATG	1 cut(s)	134
NdeII	GATC	5 cut(s)	228, 330, 433, 738, 753
NheI	GCTAGC	1 cut(s)	592
NlaIII	CATG	2 cut(s)	502, 563
NlaIV	GGNNCC	4 cut(s)	6, 151, 332, 703
NmuCI	GTSAC	1 cut(s)	494
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	99
PciI	ACATGT	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 468
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	6 cut(s)	83, 324, 370, 410, 438, 788
PflMI	CCANNNNNTGG	1 cut(s)	100
PkrI	GCNGC	7 cut(s)	69, 141, 598, 635, 664, 686, 706
PleI	GAGTC	1 cut(s)	438
PluTI	GGCGCC	1 cut(s)	705
PpsI	GAGTC	1 cut(s)	438
PpuMI	RGGWCCY	1 cut(s)	217
PscI	ACATGT	1 cut(s)	498
Psp124BI	GAGCTC	2 cut(s)	36, 357
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	99, 779
PspGI	CCWGG	2 cut(s)	99, 779
PspN4I	GGNNCC	4 cut(s)	6, 151, 332, 703
PspPI	GGNCC	3 cut(s)	23, 217, 610
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	330, 753
RsaI	GTAC	2 cut(s)	236, 558
RsaNI	GTAC	2 cut(s)	235, 557
SacI	GAGCTC	2 cut(s)	36, 357
SatI	GCNGC	7 cut(s)	68, 140, 597, 634, 663, 685, 705
Sau3AI	GATC	5 cut(s)	228, 330, 433, 738, 753
Sau96I	GGNCC	3 cut(s)	23, 217, 610
SchI	GAGTC	1 cut(s)	438
ScrFI	CCNGG	4 cut(s)	101, 304, 347, 781
SduI	GDGCHC	2 cut(s)	36, 357
SexAI	ACCWGGT	1 cut(s)	779
SfaNI	GCATC	1 cut(s)	457
SfoI	GGCGCC	1 cut(s)	703
SinI	GGWCC	3 cut(s)	23, 217, 610
Sse9I	AATT	3 cut(s)	584, 641, 654
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	9 cut(s)	60, 65, 68, 278, 286, 633, 663, 705, 763
SspDI	GGCGCC	1 cut(s)	701
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	1 cut(s)	593
SstI	GAGCTC	2 cut(s)	36, 357
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	4 cut(s)	99, 302, 345, 779
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	2 cut(s)	261, 699
TaqI	TCGA	5 cut(s)	351, 436, 567, 588, 750
TaqII	GACCGA	2 cut(s)	11, 598
TasI	AATT	3 cut(s)	584, 641, 654
TauI	GCSGC	4 cut(s)	70, 636, 665, 707
TfiI	GAWTC	6 cut(s)	83, 324, 370, 410, 438, 788
TscAI	CASTG	2 cut(s)	420, 499
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	3 cut(s)	139, 596, 684
Tsp45I	GTSAC	1 cut(s)	494
TspRI	CASTG	2 cut(s)	420, 499
Van91I	CCANNNNNTGG	1 cut(s)	100
VpaK11BI	GGWCC	3 cut(s)	23, 217, 610
XapI	RAATTY	2 cut(s)	584, 641
XceI	RCATGY	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	1 cut(s)	593
ZraI	GACGTC	1 cut(s)	697
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.