Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0459181 |
| rosa_laevigata | RLG00000025105 |
| rosa_multiflora | Rmu_sc0002435.1_g000015 Rmu_sc0004343.1_g000004 Rmu_sc0014208.1_g000004 Rmu_sc0024269.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00420440 |
| rosa_rugosa | Rorug03G0034100 Rorug03G0034100 |
| rosa_samantha | Rh3CG095200 Rh3CG096000 |
| rosa_wichuraiana | Rw3G007900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 164 |
| AcuI | CTGAAG | 1 cut(s) | 359 |
| AfaI | GTAC | 1 cut(s) | 263 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 43, 340 |
| AgsI | TTSAA | 4 cut(s) | 322, 349, 376, 433 |
| AjnI | CCWGG | 3 cut(s) | 36, 42, 299 |
| AleI | CACNNNNGTG | 1 cut(s) | 314 |
| AluBI | AGCT | 2 cut(s) | 61, 145 |
| AluI | AGCT | 2 cut(s) | 61, 145 |
| AoxI | GGCC | 1 cut(s) | 324 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 344 |
| AspLEI | GCGC | 1 cut(s) | 165 |
| AspS9I | GGNCC | 3 cut(s) | 40, 303, 446 |
| AvaII | GGWCC | 3 cut(s) | 40, 303, 446 |
| BccI | CCATC | 1 cut(s) | 272 |
| BceAI | ACGGC | 1 cut(s) | 299 |
| BciT130I | CCWGG | 3 cut(s) | 38, 44, 301 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BfaI | CTAG | 1 cut(s) | 269 |
| Bme1390I | CCNGG | 3 cut(s) | 38, 44, 301 |
| Bme18I | GGWCC | 3 cut(s) | 40, 303, 446 |
| BmgT120I | GGNCC | 3 cut(s) | 40, 303, 446 |
| BmiI | GGNNCC | 1 cut(s) | 447 |
| BmrFI | CCNGG | 3 cut(s) | 38, 44, 301 |
| BsaJI | CCNNGG | 1 cut(s) | 123 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 43, 340 |
| BseBI | CCWGG | 3 cut(s) | 38, 44, 301 |
| BseDI | CCNNGG | 1 cut(s) | 123 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 43, 340 |
| BseMII | CTCAG | 1 cut(s) | 48 |
| BshFI | GGCC | 1 cut(s) | 326 |
| BslFI | GGGAC | 1 cut(s) | 459 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 43, 340 |
| BsmFI | GGGAC | 1 cut(s) | 459 |
| BsmI | GAATGC | 2 cut(s) | 295, 301 |
| BsnI | GGCC | 1 cut(s) | 326 |
| Bsp1407I | TGTACA | 1 cut(s) | 261 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspANI | GGCC | 1 cut(s) | 326 |
| BspCNI | CTCAG | 1 cut(s) | 49 |
| BspLI | GGNNCC | 1 cut(s) | 447 |
| BsrGI | TGTACA | 1 cut(s) | 261 |
| BssECI | CCNNGG | 1 cut(s) | 123 |
| BssMI | GATC | 1 cut(s) | 3 |
| BssT1I | CCWWGG | 1 cut(s) | 123 |
| Bst2UI | CCWGG | 3 cut(s) | 38, 44, 301 |
| Bst4CI | ACNGT | 1 cut(s) | 463 |
| BstAUI | TGTACA | 1 cut(s) | 261 |
| BstC8I | GCNNGC | 1 cut(s) | 167 |
| BstDEI | CTNAG | 1 cut(s) | 57 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 338 |
| BstHHI | GCGC | 1 cut(s) | 165 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 191 |
| BstNI | CCWGG | 3 cut(s) | 38, 44, 301 |
| BstNSI | RCATGY | 1 cut(s) | 169 |
| BstSCI | CCNGG | 3 cut(s) | 36, 42, 299 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 109 |
| BsuRI | GGCC | 1 cut(s) | 326 |
| Cac8I | GCNNGC | 1 cut(s) | 167 |
| CfoI | GCGC | 1 cut(s) | 165 |
| Cfr13I | GGNCC | 3 cut(s) | 40, 303, 446 |
| CseI | GACGC | 1 cut(s) | 94 |
| Csp6I | GTAC | 1 cut(s) | 262 |
| CviAII | CATG | 4 cut(s) | 10, 109, 160, 166 |
| CviJI | RGCY | 7 cut(s) | 61, 71, 128, 145, 314, 326, 416 |
| CviKI_1 | RGCY | 7 cut(s) | 61, 71, 128, 145, 314, 326, 416 |
| CviQI | GTAC | 1 cut(s) | 262 |
| DdeI | CTNAG | 1 cut(s) | 57 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| Eco130I | CCWWGG | 1 cut(s) | 123 |
| Eco147I | AGGCCT | 1 cut(s) | 326 |
| Eco47I | GGWCC | 3 cut(s) | 40, 303, 446 |
| Eco57I | CTGAAG | 1 cut(s) | 359 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 338 |
| EcoO109I | RGGNCCY | 2 cut(s) | 303, 446 |
| EcoRII | CCWGG | 3 cut(s) | 36, 42, 299 |
| EcoT14I | CCWWGG | 1 cut(s) | 123 |
| ErhI | CCWWGG | 1 cut(s) | 123 |
| FaeI | CATG | 4 cut(s) | 13, 112, 163, 169 |
| FaqI | GGGAC | 1 cut(s) | 459 |
| FatI | CATG | 4 cut(s) | 9, 108, 159, 165 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| FspAI | RTGCGCAY | 1 cut(s) | 164 |
| FspBI | CTAG | 1 cut(s) | 269 |
| FspI | TGCGCA | 1 cut(s) | 164 |
| GlaI | GCGC | 1 cut(s) | 164 |
| HaeIII | GGCC | 1 cut(s) | 326 |
| HgaI | GACGC | 1 cut(s) | 94 |
| HhaI | GCGC | 1 cut(s) | 165 |
| Hin1II | CATG | 4 cut(s) | 13, 112, 163, 169 |
| Hin6I | GCGC | 1 cut(s) | 163 |
| HinP1I | GCGC | 1 cut(s) | 163 |
| HinfI | GANTC | 2 cut(s) | 65, 180 |
| Hpy166II | GTNNAC | 1 cut(s) | 264 |
| Hpy188III | TCNNGA | 2 cut(s) | 256, 269 |
| Hpy8I | GTNNAC | 1 cut(s) | 264 |
| HpyAV | CCTTC | 4 cut(s) | 334, 352, 370, 406 |
| HpyCH4III | ACNGT | 1 cut(s) | 463 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 191 |
| HpyF3I | CTNAG | 1 cut(s) | 57 |
| Hsp92II | CATG | 4 cut(s) | 13, 112, 163, 169 |
| HspAI | GCGC | 1 cut(s) | 163 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LmnI | GCTCC | 2 cut(s) | 142, 190 |
| MaeI | CTAG | 1 cut(s) | 269 |
| MaeIII | GTNAC | 1 cut(s) | 91 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MboII | GAAGA | 1 cut(s) | 22 |
| MluCI | AATT | 1 cut(s) | 238 |
| MlyI | GAGTC | 1 cut(s) | 189 |
| MnlI | CCTC | 3 cut(s) | 40, 127, 418 |
| MroXI | GAANNNNTTC | 1 cut(s) | 344 |
| MseI | TTAA | 4 cut(s) | 53, 216, 246, 456 |
| MslI | CAYNNNNRTG | 2 cut(s) | 164, 314 |
| MspR9I | CCNGG | 3 cut(s) | 38, 44, 301 |
| Mva1269I | GAATGC | 2 cut(s) | 295, 301 |
| MvaI | CCWGG | 3 cut(s) | 38, 44, 301 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 191 |
| NdeII | GATC | 1 cut(s) | 3 |
| NlaIII | CATG | 4 cut(s) | 13, 112, 163, 169 |
| NlaIV | GGNNCC | 1 cut(s) | 447 |
| NmuCI | GTSAC | 1 cut(s) | 91 |
| NsbI | TGCGCA | 1 cut(s) | 164 |
| NspI | RCATGY | 1 cut(s) | 169 |
| OliI | CACNNNNGTG | 1 cut(s) | 314 |
| PaeI | GCATGC | 1 cut(s) | 169 |
| PceI | AGGCCT | 1 cut(s) | 326 |
| PctI | GAATGC | 2 cut(s) | 295, 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 344 |
| PfeI | GAWTC | 1 cut(s) | 65 |
| PfoI | TCCNGGA | 1 cut(s) | 42 |
| PleI | GAGTC | 1 cut(s) | 188 |
| PpsI | GAGTC | 1 cut(s) | 188 |
| PpuMI | RGGWCCY | 2 cut(s) | 303, 446 |
| Psp5II | RGGWCCY | 2 cut(s) | 303, 446 |
| Psp6I | CCWGG | 3 cut(s) | 36, 42, 299 |
| PspGI | CCWGG | 3 cut(s) | 36, 42, 299 |
| PspN4I | GGNNCC | 1 cut(s) | 447 |
| PspPI | GGNCC | 3 cut(s) | 40, 303, 446 |
| PspPPI | RGGWCCY | 2 cut(s) | 303, 446 |
| RsaI | GTAC | 1 cut(s) | 263 |
| RsaNI | GTAC | 1 cut(s) | 262 |
| RseI | CAYNNNNRTG | 2 cut(s) | 164, 314 |
| SaqAI | TTAA | 4 cut(s) | 53, 216, 246, 456 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| Sau96I | GGNCC | 3 cut(s) | 40, 303, 446 |
| SchI | GAGTC | 1 cut(s) | 189 |
| ScrFI | CCNGG | 3 cut(s) | 38, 44, 301 |
| SinI | GGWCC | 3 cut(s) | 40, 303, 446 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 164, 314 |
| SphI | GCATGC | 1 cut(s) | 169 |
| Sse9I | AATT | 1 cut(s) | 238 |
| SseBI | AGGCCT | 1 cut(s) | 326 |
| SspMI | CTAG | 1 cut(s) | 269 |
| StuI | AGGCCT | 1 cut(s) | 326 |
| StyD4I | CCNGG | 3 cut(s) | 36, 42, 299 |
| StyI | CCWWGG | 1 cut(s) | 123 |
| TaaI | ACNGT | 1 cut(s) | 463 |
| TasI | AATT | 1 cut(s) | 238 |
| TatI | WGTACW | 1 cut(s) | 261 |
| TfiI | GAWTC | 1 cut(s) | 65 |
| Tru1I | TTAA | 4 cut(s) | 53, 216, 246, 456 |
| Tru9I | TTAA | 4 cut(s) | 53, 216, 246, 456 |
| TseFI | GTSAC | 1 cut(s) | 91 |
| Tsp45I | GTSAC | 1 cut(s) | 91 |
| TspDTI | ATGAA | 2 cut(s) | 148, 398 |
| VpaK11BI | GGWCC | 3 cut(s) | 40, 303, 446 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 338 |
| XbaI | TCTAGA | 1 cut(s) | 268 |
| XceI | RCATGY | 1 cut(s) | 169 |
| XmnI | GAANNNNTTC | 1 cut(s) | 344 |
| XspI | CTAG | 1 cut(s) | 269 |