Rmu_sc0024269.1_g000003

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024269.1
OG0017793
Physical Location & Seq
Forward (+)
5280 .. 6080
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024269.1_g000003.1.cds

Sequence Viewer

Length: 801 bp
atggcaagcacaagctccaaacccaaaatcaagactaggatcaagattaacagacccctttatatcaacttactgtttgacaaggaaaaacttccttcatctctttggggaggcgggcccaccgtagtccctggaccaggaggaccggaggacttgccggaagttttcaacaaggtgatgaacaccaccgaaggattcatgaagagcgggcccaccatagtccctggaccaggaggaccggaggacttgccggaagttttcaacaaggtgatgaacaccaccgaaggattcatgaagagttttgtcaggatgcatggtaatctgttaaaagacggctatgaggacttggctcatgagattgaaactcagttaacggaaaaggacattgttcccatgattattgtggtcaccggcatcattgaggagtacgcggatgctggcaagaccatggaagctctggtgttgtacctgattcttttggtctctaattgtgtccccaacccttacacatatagtgttctcatcaaggcactggctgcagacccggaacccaaatttcttgaggttgcaaaggagtgcatactggagatgatggaaaagggatggcagccaaatgccgagacctacactgccgtgtttaaggcatttgctttgcaggagaaggtcgaagagggtaagaagtttcgggaggaaatggaagctaagggcttcgtggcagacaagatggctgtgattgatgctctcaaggggactacaggaccggtggttaaaagcattcacaacattctctttggtaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

266

Amino Acids

29.3

Weight (kDa)

5.33

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017793)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0459181
rosa_laevigata RLG00000025105
rosa_multiflora Rmu_sc0002435.1_g000015 Rmu_sc0004343.1_g000004 Rmu_sc0014208.1_g000004 Rmu_sc0024269.1_g000003
rosa_roxburghii Rroxscaffold_6G00420440
rosa_rugosa Rorug03G0034100 Rorug03G0034100
rosa_samantha Rh3CG095200 Rh3CG096000
rosa_wichuraiana Rw3G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 207
AccII CGCG 1 cut(s) 431
AciI CCGC 3 cut(s) 114, 207, 431
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 554
AfaI GTAC 2 cut(s) 428, 467
AfiI CCNNNNNNNGG 2 cut(s) 137, 230
AgeI ACCGGT 1 cut(s) 760
AgsI TTSAA 3 cut(s) 169, 262, 362
AjnI CCWGG 4 cut(s) 130, 136, 223, 229
AleI CACNNNNGTG 1 cut(s) 632
AluBI AGCT 3 cut(s) 15, 455, 701
AluI AGCT 3 cut(s) 15, 455, 701
Alw26I GTCTC 2 cut(s) 487, 614
AlwI GGATC 1 cut(s) 47
AoxI GGCC 2 cut(s) 116, 209
ApaI GGGCCC 2 cut(s) 120, 213
ApeKI GCWGC 2 cut(s) 536, 607
ApoI RAATTY 1 cut(s) 554
AsiGI ACCGGT 1 cut(s) 760
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 9 cut(s) 116, 117, 134, 143, 209, 210, 227, 236, 758
AsuC2I CCSGG 1 cut(s) 545
AsuHPI GGTGA 3 cut(s) 187, 280, 400
AvaII GGWCC 5 cut(s) 134, 143, 227, 236, 758
BaeGI GKGCMC 2 cut(s) 120, 213
BanII GRGCYC 2 cut(s) 120, 213
BbvI GCAGC 2 cut(s) 523, 619
BccI CCATC 3 cut(s) 586, 597, 718
BceAI ACGGC 2 cut(s) 349, 617
BciT130I CCWGG 4 cut(s) 132, 138, 225, 231
BcnI CCSGG 1 cut(s) 545
BcoDI GTCTC 2 cut(s) 487, 614
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 2 cut(s) 537, 753
BisI GCNGC 2 cut(s) 537, 608
BlsI GCNGC 2 cut(s) 538, 609
Bme1390I CCNGG 5 cut(s) 132, 138, 225, 231, 545
Bme18I GGWCC 5 cut(s) 134, 143, 227, 236, 758
BmgT120I GGNCC 9 cut(s) 116, 117, 134, 143, 209, 210, 227, 236, 758
BmiI GGNNCC 3 cut(s) 118, 211, 549
BmrFI CCNGG 5 cut(s) 132, 138, 225, 231, 545
BmsI GCATC 4 cut(s) 300, 423, 424, 727
BpmI CTGGAG 1 cut(s) 605
Bpu10I CCTNAGC 1 cut(s) 702
BpuEI CTTGAG 2 cut(s) 581, 728
BpuMI CCSGG 1 cut(s) 545
BsaI GGTCTC 2 cut(s) 487, 614
BsaJI CCNNGG 3 cut(s) 130, 223, 447
BsaWI WCCGGW 3 cut(s) 145, 238, 760
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 230
Bse118I RCCGGY 2 cut(s) 410, 760
Bse1I ACTGG 2 cut(s) 537, 588
BseBI CCWGG 4 cut(s) 132, 138, 225, 231
BseDI CCNNGG 3 cut(s) 130, 223, 447
BseGI GGATG 3 cut(s) 315, 439, 608
BseLI CCNNNNNNNGG 2 cut(s) 137, 230
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 2 cut(s) 537, 588
BseRI GAGGAG 1 cut(s) 437
BseSI GKGCMC 2 cut(s) 120, 213
BseXI GCAGC 2 cut(s) 523, 619
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 2 cut(s) 118, 211
BshTI ACCGGT 1 cut(s) 760
BsiSI CCGG 7 cut(s) 146, 158, 239, 251, 411, 545, 761
BslFI GGGAC 4 cut(s) 113, 206, 479, 763
BslI CCNNNNNNNGG 2 cut(s) 137, 230
BsmAI GTCTC 2 cut(s) 487, 614
BsmFI GGGAC 4 cut(s) 113, 206, 479, 763
BsmI GAATGC 1 cut(s) 774
BsnI GGCC 2 cut(s) 118, 211
Bso31I GGTCTC 2 cut(s) 487, 614
Bsp120I GGGCCC 2 cut(s) 116, 209
Bsp1286I GDGCHC 2 cut(s) 120, 213
Bsp143I GATC 1 cut(s) 39
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 3 cut(s) 114, 207, 431
BspANI GGCC 2 cut(s) 118, 211
BspCNI CTCAG 1 cut(s) 379
BspFNI CGCG 1 cut(s) 431
BspHI TCATGA 3 cut(s) 198, 291, 352
BspLI GGNNCC 3 cut(s) 118, 211, 549
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 1 cut(s) 47
BspQI GCTCTTC 1 cut(s) 197
BspTNI GGTCTC 2 cut(s) 487, 614
BsrBI CCGCTC 1 cut(s) 207
BsrFI RCCGGY 2 cut(s) 410, 760
BsrI ACTGG 2 cut(s) 537, 588
BssAI RCCGGY 2 cut(s) 410, 760
BssECI CCNNGG 3 cut(s) 130, 223, 447
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 4 cut(s) 132, 138, 225, 231
Bst4CI ACNGT 2 cut(s) 75, 124
Bst6I CTCTTC 3 cut(s) 197, 290, 663
BstAPI GCANNNNNTGC 1 cut(s) 536
BstC8I GCNNGC 4 cut(s) 7, 116, 209, 439
BstDEI CTNAG 2 cut(s) 366, 702
BstDSI CCRYGG 1 cut(s) 447
BstEII GGTNACC 1 cut(s) 406
BstENI CCTNNNNNAGG 2 cut(s) 135, 228
BstF5I GGATG 3 cut(s) 315, 439, 608
BstFNI CGCG 1 cut(s) 431
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 2 cut(s) 487, 614
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 4 cut(s) 132, 138, 225, 231
BstPI GGTNACC 1 cut(s) 406
BstSCI CCNGG 5 cut(s) 130, 136, 223, 229, 543
BstSFI CTRYAG 2 cut(s) 537, 753
BstSLI GKGCMC 2 cut(s) 120, 213
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 523, 619
BsuRI GGCC 2 cut(s) 118, 211
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 3 cut(s) 315, 439, 608
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 2 cut(s) 530, 627
Cac8I GCNNGC 4 cut(s) 7, 116, 209, 439
CciI TCATGA 3 cut(s) 198, 291, 352
Cfr10I RCCGGY 2 cut(s) 410, 760
Cfr13I GGNCC 9 cut(s) 116, 117, 134, 143, 209, 210, 227, 236, 758
Csp6I GTAC 2 cut(s) 427, 466
CspAI ACCGGT 1 cut(s) 760
CviAII CATG 6 cut(s) 199, 292, 314, 353, 394, 448
CviQI GTAC 2 cut(s) 427, 466
DdeI CTNAG 2 cut(s) 366, 702
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 3 cut(s) 197, 290, 663
EarI CTCTTC 3 cut(s) 197, 290, 663
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 2 cut(s) 120, 213
Eco31I GGTCTC 2 cut(s) 487, 614
Eco47I GGWCC 5 cut(s) 134, 143, 227, 236, 758
Eco91I GGTNACC 1 cut(s) 406
EcoNI CCTNNNNNAGG 2 cut(s) 135, 228
EcoO65I GGTNACC 1 cut(s) 406
EcoRII CCWGG 4 cut(s) 130, 136, 223, 229
EcoT14I CCWWGG 1 cut(s) 447
EcoT22I ATGCAT 1 cut(s) 315
EcoT38I GRGCYC 2 cut(s) 120, 213
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 6 cut(s) 202, 295, 317, 356, 397, 451
FaqI GGGAC 4 cut(s) 113, 206, 479, 763
FatI CATG 6 cut(s) 198, 291, 313, 352, 393, 447
FauI CCCGC 2 cut(s) 107, 200
Fnu4HI GCNGC 2 cut(s) 537, 608
FokI GGATG 3 cut(s) 322, 446, 615
FriOI GRGCYC 2 cut(s) 120, 213
Fsp4HI GCNGC 2 cut(s) 537, 608
FspBI CTAG 1 cut(s) 36
GluI GCNGC 2 cut(s) 537, 608
GsuI CTGGAG 1 cut(s) 605
HaeIII GGCC 2 cut(s) 118, 211
HapII CCGG 7 cut(s) 146, 158, 239, 251, 411, 545, 761
Hin1II CATG 6 cut(s) 202, 295, 317, 356, 397, 451
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HinfI GANTC 3 cut(s) 195, 288, 472
HpaI GTTAAC 1 cut(s) 372
HpaII CCGG 7 cut(s) 146, 158, 239, 251, 411, 545, 761
HphI GGTGA 3 cut(s) 187, 280, 400
Hpy166II GTNNAC 1 cut(s) 372
Hpy188III TCNNGA 8 cut(s) 31, 43, 199, 292, 307, 353, 560, 686
Hpy8I GTNNAC 1 cut(s) 372
HpyAV CCTTC 4 cut(s) 105, 185, 278, 655
HpyCH4III ACNGT 2 cut(s) 75, 124
HpyCH4V TGCA 5 cut(s) 313, 539, 569, 579, 655
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 2 cut(s) 366, 702
Hsp92II CATG 6 cut(s) 202, 295, 317, 356, 397, 451
KspAI GTTAAC 1 cut(s) 372
Kzo9I GATC 1 cut(s) 39
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 2 cut(s) 523, 619
LweI GCATC 4 cut(s) 300, 423, 424, 727
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 406
MalI GATC 1 cut(s) 41
MbiI CCGCTC 1 cut(s) 207
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 214, 307, 680
MhlI GDGCHC 2 cut(s) 120, 213
MluCI AATT 2 cut(s) 487, 554
Mph1103I ATGCAT 1 cut(s) 315
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 5 cut(s) 48, 326, 371, 639, 768
MslI CAYNNNNRTG 1 cut(s) 632
MspI CCGG 7 cut(s) 146, 158, 239, 251, 411, 545, 761
MspR9I CCNGG 5 cut(s) 132, 138, 225, 231, 545
Mva1269I GAATGC 1 cut(s) 774
MvaI CCWGG 4 cut(s) 132, 138, 225, 231
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 536
NciI CCSGG 1 cut(s) 545
NcoI CCATGG 1 cut(s) 447
NdeII GATC 1 cut(s) 39
NlaIII CATG 6 cut(s) 202, 295, 317, 356, 397, 451
NlaIV GGNNCC 3 cut(s) 118, 211, 549
NmeAIII GCCGAG 1 cut(s) 643
NmuCI GTSAC 1 cut(s) 406
NsiI ATGCAT 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 632
PagI TCATGA 3 cut(s) 198, 291, 352
PciSI GCTCTTC 1 cut(s) 197
PctI GAATGC 1 cut(s) 774
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 3 cut(s) 195, 288, 472
PinAI ACCGGT 1 cut(s) 760
PkrI GCNGC 2 cut(s) 538, 609
Psp6I CCWGG 4 cut(s) 130, 136, 223, 229
PspEI GGTNACC 1 cut(s) 406
PspGI CCWGG 4 cut(s) 130, 136, 223, 229
PspN4I GGNNCC 3 cut(s) 118, 211, 549
PspOMI GGGCCC 2 cut(s) 116, 209
PspPI GGNCC 9 cut(s) 116, 117, 134, 143, 209, 210, 227, 236, 758
PstI CTGCAG 1 cut(s) 541
RsaI GTAC 2 cut(s) 428, 467
RsaNI GTAC 2 cut(s) 427, 466
RseI CAYNNNNRTG 1 cut(s) 632
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 5 cut(s) 48, 326, 371, 639, 768
SatI GCNGC 2 cut(s) 537, 608
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 9 cut(s) 116, 117, 134, 143, 209, 210, 227, 236, 758
ScrFI CCNGG 5 cut(s) 132, 138, 225, 231, 545
SduI GDGCHC 2 cut(s) 120, 213
SetI ASST 9 cut(s) 17, 177, 270, 457, 471, 567, 626, 666, 703
SfaNI GCATC 4 cut(s) 300, 423, 424, 727
SfcI CTRYAG 2 cut(s) 537, 753
SinI GGWCC 5 cut(s) 134, 143, 227, 236, 758
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 2 cut(s) 560, 743
SmoI CTYRAG 2 cut(s) 560, 743
Sse9I AATT 2 cut(s) 487, 554
SsiI CCGC 3 cut(s) 114, 207, 431
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 5 cut(s) 130, 136, 223, 229, 543
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 2 cut(s) 75, 124
TaqI TCGA 1 cut(s) 666
TasI AATT 2 cut(s) 487, 554
TfiI GAWTC 3 cut(s) 195, 288, 472
Tru1I TTAA 5 cut(s) 48, 326, 371, 639, 768
Tru9I TTAA 5 cut(s) 48, 326, 371, 639, 768
TscAI CASTG 2 cut(s) 537, 634
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 2 cut(s) 536, 607
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 7 cut(s) 87, 187, 194, 215, 280, 287, 308
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 2 cut(s) 537, 634
VpaK11BI GGWCC 5 cut(s) 134, 143, 227, 236, 758
XagI CCTNNNNNAGG 2 cut(s) 135, 228
XapI RAATTY 1 cut(s) 554
XcmI CCANNNNNNNNNTGG 2 cut(s) 400, 454
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.