Rh3CG095200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017793
Physical Location & Seq
Reverse (-)
7512003 .. 7512335
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG095200.1

Sequence Viewer

Length: 333 bp
ATGCGCATGCTATCTCTTGGAGTCGCTCCCAACGCATACACTAACAGTGTTCTCATTAAGGCACTTGCAAAAGACCCCAATTTCCTTGGTGATGTCAAGATGTACACTCTAGAAATGATGGACAAGGGAATGCGGCCGAATGCCAGGACCTACACTGCCGTGTTCAAGGCCTTTGCCCGGCTGAAGGATTTCAAGGTGGAGAAGGGCAAAGAGTTTCTGAAGGAGATGAAAGCAAGGGGGTCTGTTCCTAACAAGAAGGCTGTTATGGAGGTTTTGAAGGGCAGAAAGGGACCTGTAGTTAAGACGGTCATCAACATTCTCTTTGCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

110

Amino Acids

12.34

Weight (kDa)

10.26

Isoelectric Point (pI)

10.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017793)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0459181
rosa_laevigata RLG00000025105
rosa_multiflora Rmu_sc0002435.1_g000015 Rmu_sc0004343.1_g000004 Rmu_sc0014208.1_g000004 Rmu_sc0024269.1_g000003
rosa_roxburghii Rroxscaffold_6G00420440
rosa_rugosa Rorug03G0034100 Rorug03G0034100
rosa_samantha Rh3CG095200 Rh3CG096000
rosa_wichuraiana Rw3G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AciI CCGC 1 cut(s) 133
AcoI YGGCCR 1 cut(s) 134
AcuI CTGAAG 2 cut(s) 203, 239
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 177, 184
AgsI TTSAA 3 cut(s) 166, 193, 277
AjnI CCWGG 1 cut(s) 143
AleI CACNNNNGTG 1 cut(s) 158
AoxI GGCC 2 cut(s) 134, 168
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 147, 290
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 101
AvaII GGWCC 2 cut(s) 147, 290
BccI CCATC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 145
BcnI CCSGG 1 cut(s) 178
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 145, 178
Bme18I GGWCC 2 cut(s) 147, 290
BmgT120I GGNCC 2 cut(s) 147, 290
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 2 cut(s) 145, 178
BpuMI CCSGG 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 184
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 85
BseLI CCNNNNNNNGG 2 cut(s) 177, 184
BseX3I CGGCCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 2 cut(s) 136, 170
BsiEI CGRYCG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 177, 184
BsmFI GGGAC 1 cut(s) 303
BsmI GAATGC 2 cut(s) 135, 145
BsnI GGCC 2 cut(s) 136, 170
Bsp1407I TGTACA 1 cut(s) 102
BspACI CCGC 1 cut(s) 133
BspANI GGCC 2 cut(s) 136, 170
BspLI GGNNCC 1 cut(s) 291
BsrGI TGTACA 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 47, 307
BstAUI TGTACA 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 8
BstHHI GCGC 1 cut(s) 6
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 143, 176
BstSFI CTRYAG 1 cut(s) 294
BstZI CGGCCG 1 cut(s) 134
BsuRI GGCC 2 cut(s) 136, 170
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 52, 153
Cac8I GCNNGC 1 cut(s) 8
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 147, 290
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 7
CviJI RGCY 4 cut(s) 136, 170, 181, 260
CviKI_1 RGCY 4 cut(s) 136, 170, 181, 260
CviQI GTAC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 134
EagI CGGCCG 1 cut(s) 134
EclXI CGGCCG 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 170
Eco47I GGWCC 2 cut(s) 147, 290
Eco52I CGGCCG 1 cut(s) 134
Eco57I CTGAAG 2 cut(s) 203, 239
EcoO109I RGGNCCY 2 cut(s) 147, 290
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 10
FaiI YATR 3 cut(s) 8, 37, 266
FaqI GGGAC 1 cut(s) 303
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 134
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 1 cut(s) 110
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 2 cut(s) 136, 170
HapII CCGG 1 cut(s) 178
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 21
HpaII CCGG 1 cut(s) 178
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 2 cut(s) 97, 110
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 5 cut(s) 178, 196, 214, 250, 271
HpyCH4III ACNGT 2 cut(s) 47, 307
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 4 cut(s) 130, 157, 191, 306
MaeI CTAG 1 cut(s) 110
MluCI AATT 1 cut(s) 79
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 2 cut(s) 57, 300
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 2 cut(s) 145, 178
Mva1269I GAATGC 2 cut(s) 135, 145
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 178
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 291
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 10
OliI CACNNNNGTG 1 cut(s) 158
PaeI GCATGC 1 cut(s) 10
PceI AGGCCT 1 cut(s) 170
PctI GAATGC 2 cut(s) 135, 145
PdmI GAANNNNTTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PpuMI RGGWCCY 2 cut(s) 147, 290
Psp5II RGGWCCY 2 cut(s) 147, 290
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 2 cut(s) 147, 290
PspPPI RGGWCCY 2 cut(s) 147, 290
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 2 cut(s) 57, 300
SatI GCNGC 1 cut(s) 134
Sau96I GGNCC 2 cut(s) 147, 290
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 2 cut(s) 145, 178
SetI ASST 4 cut(s) 152, 198, 273, 295
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 2 cut(s) 147, 290
SmiMI CAYNNNNRTG 1 cut(s) 158
SphI GCATGC 1 cut(s) 10
Sse9I AATT 1 cut(s) 79
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 1 cut(s) 133
SspMI CTAG 1 cut(s) 110
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 143, 176
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 47, 307
TasI AATT 1 cut(s) 79
TatI WGTACW 1 cut(s) 102
TauI GCSGC 1 cut(s) 136
Tru1I TTAA 2 cut(s) 57, 300
Tru9I TTAA 2 cut(s) 57, 300
TscAI CASTG 2 cut(s) 52, 160
TspDTI ATGAA 1 cut(s) 242
TspRI CASTG 2 cut(s) 52, 160
VpaK11BI GGWCC 2 cut(s) 147, 290
XbaI TCTAGA 1 cut(s) 109
XceI RCATGY 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.