Rh3CG096000

Golgi vesicle prefusion complex stabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017793
Physical Location & Seq
Reverse (-)
7531754 .. 7534844
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG096000.1

Sequence Viewer

Length: 1401 bp
ATGGCAAGCACAAGCTCCAAACCCAAAATCAAGACTAGGATCAAGATTAACAGACCCCTTTACATCAACTTACTGTTTGACAAGGAAAAACTTCCTTCATCTCTTTGGGGAGGCGGGCCCACCATAGTCCCTGGACCAGGAGGACCGGAGGACTTGCCGGAAGTTTTCGACAAGGTGATGAACTCCACCGAAGGATTCATGAAGAGTTTTGTCAGGATGCATGGTAATCTGGTAAAAGACGGCTATGAGGACTTGGCTCATGAGATTGAAACTCAGTTAACGGAAAAGGACATTGTTCCCATGATTATTGTGGTCACCGGCATCATTGAGGAGTACGCGGATGCCGGCAAGACCATGGAAGCTCTGGTGGTGTACCTGATTCTTTTGGTCTCTAATTGTGTCCCCAACCCTTACACATATAGTGTCCTCATCAAGGCACTGGCCGCAGACCCGGACCCCAAATTTCTTGAGGTTGCAAAGGAGTGCATACTGGAGATGATGGAAAAGGGATGGCAGCCCAATGCCGAGACCTACACTGCCGTGTTTAAGGCATTTGCTTTGCAGGAGAAGGTTGAAGAGGGTAAGAAGTTTCGGGAGGAAATGGAAGCTAAGGGCTTCGTGGCAGACAAGATGGCTGTGATTGATGCTCTCAAGGGGACTACAGGACCGGTGGTTAAAAGCATTCACAACATTCTCTTTGATGACTCAGAGTACTCCGACTCAGATGACGATGATGATATAGACAAACTGATTGACTTGCAGAAGCTTTCTCCTTATAGTTTTGTAACTCCTCTCCTCAAGATTCCTGATATTGAAAATGACCCAGAGAACCCCAAAGATTTTCAACAAGTCTTCAATAAGATGCACACCGCGGAAGGTTTTGTCAAAACTGTGGTAAGGATGTTCAAAATGCTAGAACGTGAAGGCTTCCTATCTCAGGCTCAAGAGATCAGGGCCAAGATATATTCTTTTTGTGAATCTAATGATATGCCCGAAGTCGTGATTCACACCGGCATGATGGAGATCTACTCCAAGGCTGACAGGTTCAAGGAGGCTCTGAGGGTGTTCCAGAGGATGATATCCCTTGGTGTTGCTCCCAACGCATACACCTATAGTGTTCTCATCAAGGCACTCACTAAAGACCCCAACTTCCTTGATGATGCCAAGCAGTATGTGCTGGAAATGATGGGGAATGGAATGCAACCCACTGCCAAGACCTACACCACTTTGTTTTATGCTTTCACCCAGCTGGGGAAGGATAAGTTGAAGGAGGCTAAGGAGTTTGTGAAGCAGATGAAAGCCAGGGGTTTTGTAGCTAACAAGAAAGCTGTGAAGGAAGTTCTGAAGGGTAAAAAAGCACCTATTGCTAAAATGGTCATCAACATTCTCTTTGCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

466

Amino Acids

52.51

Weight (kDa)

5.59

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 104 - 148 2.9e-06 PPR repeat family
PPR_2 PF13041 331 - 380 6.7e-12 PPR repeat family
TPR_24 PF23276 338 - 395 6.9e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 347 - 449 3.9e-07 Pentacotripeptide-repeat region of PRORP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017793)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0459181
rosa_laevigata RLG00000025105
rosa_multiflora Rmu_sc0002435.1_g000015 Rmu_sc0004343.1_g000004 Rmu_sc0014208.1_g000004 Rmu_sc0024269.1_g000003
rosa_roxburghii Rroxscaffold_6G00420440
rosa_rugosa Rorug03G0034100 Rorug03G0034100
rosa_samantha Rh3CG095200 Rh3CG096000
rosa_wichuraiana Rw3G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 338, 872
AciI CCGC 5 cut(s) 114, 338, 444, 870, 872
AclWI GGATC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 461
AcuI CTGAAG 1 cut(s) 1364
AfaI GTAC 3 cut(s) 335, 374, 713
AfiI CCNNNNNNNGG 4 cut(s) 137, 433, 937, 1251
AgeI ACCGGT 1 cut(s) 667
AgsI TTSAA 8 cut(s) 269, 575, 815, 845, 856, 907, 1048, 1267
AjnI CCWGG 3 cut(s) 130, 136, 1301
AleI CACNNNNGTG 1 cut(s) 539
AluBI AGCT 7 cut(s) 15, 362, 608, 766, 1249, 1316, 1328
AluI AGCT 7 cut(s) 15, 362, 608, 766, 1249, 1316, 1328
Alw26I GTCTC 2 cut(s) 394, 521
AlwI GGATC 1 cut(s) 47
AoxI GGCC 3 cut(s) 116, 441, 954
ApaI GGGCCC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 461
AsiGI ACCGGT 1 cut(s) 667
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 7 cut(s) 116, 117, 134, 143, 454, 665, 954
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 3 cut(s) 187, 307, 1234
AvaII GGWCC 4 cut(s) 134, 143, 454, 665
BaeGI GKGCMC 1 cut(s) 120
BanII GRGCYC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 844
BbvI GCAGC 1 cut(s) 526
BccI CCATC 5 cut(s) 493, 504, 625, 1012, 1180
BceAI ACGGC 2 cut(s) 256, 524
BciT130I CCWGG 3 cut(s) 132, 138, 1303
BcnI CCSGG 1 cut(s) 452
BcoDI GTCTC 2 cut(s) 394, 521
BfaI CTAG 2 cut(s) 36, 914
BfmI CTRYAG 2 cut(s) 660, 1111
BglII AGATCT 1 cut(s) 1023
BisI GCNGC 2 cut(s) 444, 515
BlsI GCNGC 2 cut(s) 445, 516
BmcAI AGTACT 1 cut(s) 713
Bme1390I CCNGG 4 cut(s) 132, 138, 452, 1303
Bme18I GGWCC 4 cut(s) 134, 143, 454, 665
BmgT120I GGNCC 7 cut(s) 116, 117, 134, 143, 454, 665, 954
BmiI GGNNCC 2 cut(s) 118, 456
BmrFI CCNGG 4 cut(s) 132, 138, 452, 1303
BmsI GCATC 6 cut(s) 207, 330, 331, 634, 852, 1150
BpiI GAAGAC 1 cut(s) 844
BplI GAGNNNNNCTC 2 cut(s) 1013, 1045
BpmI CTGGAG 1 cut(s) 512
Bpu10I CCTNAGC 2 cut(s) 609, 1275
BpuEI CTTGAG 4 cut(s) 488, 635, 782, 927
BpuMI CCSGG 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 1022
BsaI GGTCTC 2 cut(s) 394, 521
BsaJI CCNNGG 6 cut(s) 130, 354, 870, 1032, 1084, 1302
BsaWI WCCGGW 2 cut(s) 145, 667
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 433, 937, 1251
Bse118I RCCGGY 4 cut(s) 317, 344, 667, 1010
Bse1I ACTGG 2 cut(s) 444, 495
Bse8I GATNNNNATC 1 cut(s) 1022
BseBI CCWGG 3 cut(s) 132, 138, 1303
BseDI CCNNGG 6 cut(s) 130, 354, 870, 1032, 1084, 1302
BseGI GGATG 5 cut(s) 222, 346, 515, 906, 1080
BseJI GATNNNNATC 1 cut(s) 1022
BseLI CCNNNNNNNGG 4 cut(s) 137, 433, 937, 1251
BseMII CTCAG 6 cut(s) 287, 720, 735, 950, 1049, 1386
BseNI ACTGG 2 cut(s) 444, 495
BseRI GAGGAG 3 cut(s) 344, 780, 785
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 1 cut(s) 526
BseYI CCCAGC 2 cut(s) 1245, 1249
Bsh1236I CGCG 2 cut(s) 338, 872
BshFI GGCC 3 cut(s) 118, 443, 956
BshTI ACCGGT 1 cut(s) 667
BsiSI CCGG 7 cut(s) 146, 158, 318, 345, 452, 668, 1011
BslFI GGGAC 3 cut(s) 113, 386, 670
BslI CCNNNNNNNGG 4 cut(s) 137, 433, 937, 1251
BsmAI GTCTC 2 cut(s) 394, 521
BsmFI GGGAC 3 cut(s) 113, 386, 670
BsmI GAATGC 2 cut(s) 681, 1203
BsnI GGCC 3 cut(s) 118, 443, 956
Bso31I GGTCTC 2 cut(s) 394, 521
Bsp120I GGGCCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 3 cut(s) 39, 948, 1023
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 5 cut(s) 114, 338, 444, 870, 872
BspANI GGCC 3 cut(s) 118, 443, 956
BspCNI CTCAG 6 cut(s) 286, 719, 734, 949, 1050, 1387
BspFNI CGCG 2 cut(s) 338, 872
BspHI TCATGA 2 cut(s) 198, 259
BspLI GGNNCC 2 cut(s) 118, 456
BspPI GGATC 1 cut(s) 47
BspTNI GGTCTC 2 cut(s) 394, 521
BsrFI RCCGGY 4 cut(s) 317, 344, 667, 1010
BsrI ACTGG 2 cut(s) 444, 495
BssAI RCCGGY 4 cut(s) 317, 344, 667, 1010
BssECI CCNNGG 6 cut(s) 130, 354, 870, 1032, 1084, 1302
BssMI GATC 3 cut(s) 39, 948, 1023
BssT1I CCWWGG 3 cut(s) 354, 1032, 1084
Bst2UI CCWGG 3 cut(s) 132, 138, 1303
Bst4CI ACNGT 2 cut(s) 75, 892
Bst6I CTCTTC 2 cut(s) 197, 570
BstAPI GCANNNNNTGC 2 cut(s) 1174, 1364
BstC8I GCNNGC 3 cut(s) 7, 116, 346
BstDEI CTNAG 8 cut(s) 273, 609, 706, 721, 936, 1058, 1275, 1395
BstDSI CCRYGG 2 cut(s) 354, 870
BstEII GGTNACC 1 cut(s) 313
BstENI CCTNNNNNAGG 3 cut(s) 135, 431, 935
BstF5I GGATG 5 cut(s) 222, 346, 515, 906, 1080
BstFNI CGCG 2 cut(s) 338, 872
BstKTI GATC 3 cut(s) 42, 951, 1026
BstMAI GTCTC 2 cut(s) 394, 521
BstMBI GATC 3 cut(s) 39, 948, 1023
BstMWI GCNNNNNNNGC 4 cut(s) 443, 1100, 1174, 1364
BstNI CCWGG 3 cut(s) 132, 138, 1303
BstPI GGTNACC 1 cut(s) 313
BstSCI CCNGG 4 cut(s) 130, 136, 450, 1301
BstSFI CTRYAG 2 cut(s) 660, 1111
BstSLI GKGCMC 1 cut(s) 120
BstUI CGCG 2 cut(s) 338, 872
BstV1I GCAGC 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 844
BstX2I RGATCY 1 cut(s) 1023
BstYI RGATCY 1 cut(s) 1023
BsuRI GGCC 3 cut(s) 118, 443, 956
BtgI CCRYGG 2 cut(s) 354, 870
BtsCI GGATG 5 cut(s) 222, 346, 515, 906, 1080
BtsI GCAGTG 2 cut(s) 534, 1206
BtsIMutI CAGTG 3 cut(s) 437, 534, 1206
Cac8I GCNNGC 3 cut(s) 7, 116, 346
CciI TCATGA 2 cut(s) 198, 259
Cfr10I RCCGGY 4 cut(s) 317, 344, 667, 1010
Cfr13I GGNCC 7 cut(s) 116, 117, 134, 143, 454, 665, 954
Cfr42I CCGCGG 1 cut(s) 873
Csp6I GTAC 3 cut(s) 334, 373, 712
CspAI ACCGGT 1 cut(s) 667
CviAII CATG 6 cut(s) 199, 221, 260, 301, 355, 1015
CviQI GTAC 3 cut(s) 334, 373, 712
DdeI CTNAG 8 cut(s) 273, 609, 706, 721, 936, 1058, 1275, 1395
DpnI GATC 3 cut(s) 41, 950, 1025
DpnII GATC 3 cut(s) 39, 948, 1023
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 197, 570
EarI CTCTTC 2 cut(s) 197, 570
Eco130I CCWWGG 3 cut(s) 354, 1032, 1084
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 2 cut(s) 394, 521
Eco32I GATATC 1 cut(s) 1080
Eco47I GGWCC 4 cut(s) 134, 143, 454, 665
Eco57I CTGAAG 1 cut(s) 1364
Eco91I GGTNACC 1 cut(s) 313
EcoNI CCTNNNNNAGG 3 cut(s) 135, 431, 935
EcoO65I GGTNACC 1 cut(s) 313
EcoRII CCWGG 3 cut(s) 130, 136, 1301
EcoRV GATATC 1 cut(s) 1080
EcoT14I CCWWGG 3 cut(s) 354, 1032, 1084
EcoT22I ATGCAT 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 3 cut(s) 354, 1032, 1084
FaeI CATG 6 cut(s) 202, 224, 263, 304, 358, 1018
FaqI GGGAC 3 cut(s) 113, 386, 670
FatI CATG 6 cut(s) 198, 220, 259, 300, 354, 1014
FauI CCCGC 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 444, 515
FokI GGATG 5 cut(s) 229, 353, 522, 913, 1087
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 2 cut(s) 444, 515
FspBI CTAG 2 cut(s) 36, 914
GluI GCNGC 2 cut(s) 444, 515
GsaI CCCAGC 2 cut(s) 1249, 1253
GsuI CTGGAG 1 cut(s) 512
HaeIII GGCC 3 cut(s) 118, 443, 956
HapII CCGG 7 cut(s) 146, 158, 318, 345, 452, 668, 1011
Hin1II CATG 6 cut(s) 202, 224, 263, 304, 358, 1018
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 7 cut(s) 195, 379, 704, 719, 802, 977, 1003
HpaI GTTAAC 1 cut(s) 279
HpaII CCGG 7 cut(s) 146, 158, 318, 345, 452, 668, 1011
HphI GGTGA 3 cut(s) 187, 307, 1234
Hpy166II GTNNAC 2 cut(s) 279, 373
Hpy188I TCNGA 5 cut(s) 709, 718, 724, 1059, 1344
Hpy8I GTNNAC 2 cut(s) 279, 373
HpyAV CCTTC 9 cut(s) 105, 185, 562, 869, 917, 1249, 1261, 1327, 1339
HpyCH4III ACNGT 2 cut(s) 75, 892
HpyCH4IV ACGT 1 cut(s) 919
HpyCH4V TGCA 7 cut(s) 220, 476, 486, 562, 760, 865, 1201
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 1100, 1174, 1364
HpyF3I CTNAG 8 cut(s) 273, 609, 706, 721, 936, 1058, 1275, 1395
HpySE526I ACGT 1 cut(s) 919
Hsp92II CATG 6 cut(s) 202, 224, 263, 304, 358, 1018
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
KspAI GTTAAC 1 cut(s) 279
KspI CCGCGG 1 cut(s) 873
Kzo9I GATC 3 cut(s) 39, 948, 1023
LmnI GCTCC 2 cut(s) 20, 1099
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 6 cut(s) 207, 330, 331, 634, 852, 1150
MaeI CTAG 2 cut(s) 36, 914
MaeII ACGT 1 cut(s) 919
MaeIII GTNAC 2 cut(s) 313, 784
MalI GATC 3 cut(s) 41, 950, 1025
MboI GATC 3 cut(s) 39, 948, 1023
MboII GAAGA 3 cut(s) 214, 587, 844
MflI RGATCY 1 cut(s) 1023
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 2 cut(s) 394, 461
MlyI GAGTC 2 cut(s) 698, 713
MmeI TCCRAC 1 cut(s) 741
Mph1103I ATGCAT 1 cut(s) 222
MroNI GCCGGC 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 4 cut(s) 48, 278, 546, 675
MslI CAYNNNNRTG 2 cut(s) 539, 1013
MspA1I CMGCKG 2 cut(s) 872, 1249
MspI CCGG 7 cut(s) 146, 158, 318, 345, 452, 668, 1011
MspR9I CCNGG 4 cut(s) 132, 138, 452, 1303
Mva1269I GAATGC 2 cut(s) 681, 1203
MvaI CCWGG 3 cut(s) 132, 138, 1303
MvnI CGCG 2 cut(s) 338, 872
MwoI GCNNNNNNNGC 4 cut(s) 443, 1100, 1174, 1364
NaeI GCCGGC 1 cut(s) 346
NciI CCSGG 1 cut(s) 452
NcoI CCATGG 1 cut(s) 354
NdeII GATC 3 cut(s) 39, 948, 1023
NgoMIV GCCGGC 1 cut(s) 344
NlaIII CATG 6 cut(s) 202, 224, 263, 304, 358, 1018
NlaIV GGNNCC 2 cut(s) 118, 456
NmeAIII GCCGAG 1 cut(s) 550
NmuCI GTSAC 1 cut(s) 313
NsiI ATGCAT 1 cut(s) 222
OliI CACNNNNGTG 1 cut(s) 539
PagI TCATGA 2 cut(s) 198, 259
PctI GAATGC 2 cut(s) 681, 1203
PdiI GCCGGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 5 cut(s) 195, 379, 802, 977, 1003
PinAI ACCGGT 1 cut(s) 667
PkrI GCNGC 2 cut(s) 445, 516
PleI GAGTC 2 cut(s) 698, 713
PpsI GAGTC 2 cut(s) 698, 713
Psp6I CCWGG 3 cut(s) 130, 136, 1301
PspEI GGTNACC 1 cut(s) 313
PspFI CCCAGC 2 cut(s) 1245, 1249
PspGI CCWGG 3 cut(s) 130, 136, 1301
PspN4I GGNNCC 2 cut(s) 118, 456
PspOMI GGGCCC 1 cut(s) 116
PspPI GGNCC 7 cut(s) 116, 117, 134, 143, 454, 665, 954
PsuI RGATCY 1 cut(s) 1023
PvuII CAGCTG 1 cut(s) 1249
RsaI GTAC 3 cut(s) 335, 374, 713
RsaNI GTAC 3 cut(s) 334, 373, 712
RseI CAYNNNNRTG 2 cut(s) 539, 1013
SacII CCGCGG 1 cut(s) 873
SaqAI TTAA 4 cut(s) 48, 278, 546, 675
SatI GCNGC 2 cut(s) 444, 515
Sau3AI GATC 3 cut(s) 39, 948, 1023
Sau96I GGNCC 7 cut(s) 116, 117, 134, 143, 454, 665, 954
ScaI AGTACT 1 cut(s) 713
SchI GAGTC 2 cut(s) 698, 713
ScrFI CCNGG 4 cut(s) 132, 138, 452, 1303
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 6 cut(s) 207, 330, 331, 634, 852, 1150
SfcI CTRYAG 2 cut(s) 660, 1111
Sfr303I CCGCGG 1 cut(s) 873
SgrBI CCGCGG 1 cut(s) 873
SinI GGWCC 4 cut(s) 134, 143, 454, 665
SmiMI CAYNNNNRTG 2 cut(s) 539, 1013
SmlI CTYRAG 4 cut(s) 467, 650, 797, 942
SmoI CTYRAG 4 cut(s) 467, 650, 797, 942
Sse9I AATT 2 cut(s) 394, 461
SsiI CCGC 5 cut(s) 114, 338, 444, 870, 872
SspMI CTAG 2 cut(s) 36, 914
StyD4I CCNGG 4 cut(s) 130, 136, 450, 1301
StyI CCWWGG 3 cut(s) 354, 1032, 1084
TaaI ACNGT 2 cut(s) 75, 892
TaiI ACGT 1 cut(s) 922
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 394, 461
TatI WGTACW 1 cut(s) 711
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 5 cut(s) 195, 379, 802, 977, 1003
Tru1I TTAA 4 cut(s) 48, 278, 546, 675
Tru9I TTAA 4 cut(s) 48, 278, 546, 675
TscAI CASTG 3 cut(s) 444, 541, 1213
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 514
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 5 cut(s) 87, 187, 194, 215, 1310
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 3 cut(s) 444, 541, 1213
VpaK11BI GGWCC 4 cut(s) 134, 143, 454, 665
XagI CCTNNNNNAGG 3 cut(s) 135, 431, 935
XapI RAATTY 1 cut(s) 461
XcmI CCANNNNNNNNNTGG 2 cut(s) 307, 361
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 2 cut(s) 36, 914
ZrmI AGTACT 1 cut(s) 713
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.