Rmu_sc0014208.1_g000004

Golgi vesicle prefusion complex stabilization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014208.1
OG0017793
Physical Location & Seq
Reverse (-)
8712 .. 10552
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014208.1_g000004.1.cds

Sequence Viewer

Length: 1413 bp
atggcaagcacaagctccaaacccaaaatcaagactaggatcaagattaacagacccctttatatcaacttactgtttgacaaggaaaaacttccttcatctctttggggaggcggcgggcccaccatagtccctggaccaggaggaccggaggacttgccggaagttttcaacaaggtgatgaacaccaccgaaggattcatgaagagttttgtcaggatgcatggtaatctgttaaaagacggctatgaggacttggctcatgagattgaaactcagttaacggaaaaggacattgttcccatgattattgtggtcaccggcatcattgaggagtacgcggatgctggcaagaccatggaagctctggtgttgtacctgattcttttggtctctaattgtgtccccaacccttacacatatagtgttctcatcaaggcactggctgcagacccggaacccaaatttcttgaggttgcaaaggagtgcatactggagatgatggaaaagggatggcagccaaatgccgagacctacactgccgtgtttaaggcatttgctttgcaggagaaggtcgaagagggtaagaagtttcgggaggaaatggaagctaagggcttcgtggcagacaagatggctgtgattgatgctctcaaggggactacaggaccggtggttaaaagcattcacaacattctctttgatgactcagagtactccgactcagatgacgatgatgatataaagaaattctacaaactgatcgacttgcagaagctttctccttatagttttgtaactcctctcctcaagattcctgatattgaaaatgacccagagaaccccaaagattttcaacaagtcttcaacaagatgcacaccgccgaaggttttgtcaaaactgtggtaaggatgttcaaaatgctagaacgtgaaggcttcctatctcaggctcaagagatcagggccaagatatattctttttgtgaatctaatgatatgcccgaagtcgtgattcacaccggcatgatggagatctactccaaggctgacaggtccaaggaggctctcagggtgttccagaggatgatatcccttggtgttgctcccaacgcatacacctatagtgttctcatcaaggcactcactaaagaccccaacttccttgatgatgccaagcagtatgtgctggaaatgatggggaatggaatgcaacccactgccaagacctacaccactttgttttatgcttttacccagctggggaaggataagttgaaggaggctaaggagtttgtgaagcagatgaaagccaggggttttgtagctaacaagaaagctgtgaaggaagttctgaagggtaaaaaagcacctattgctaaaatggtcatcaacattctctttgctgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

470

Amino Acids

53.02

Weight (kDa)

6.13

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017793)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0459181
rosa_laevigata RLG00000025105
rosa_multiflora Rmu_sc0002435.1_g000015 Rmu_sc0004343.1_g000004 Rmu_sc0014208.1_g000004 Rmu_sc0024269.1_g000003
rosa_roxburghii Rroxscaffold_6G00420440
rosa_rugosa Rorug03G0034100 Rorug03G0034100
rosa_samantha Rh3CG095200 Rh3CG096000
rosa_wichuraiana Rw3G007900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 341
AciI CCGC 4 cut(s) 114, 117, 341, 882
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 2 cut(s) 464, 749
AcuI CTGAAG 1 cut(s) 1376
AfaI GTAC 3 cut(s) 338, 377, 716
AfiI CCNNNNNNNGG 3 cut(s) 140, 949, 1263
AgeI ACCGGT 1 cut(s) 670
AgsI TTSAA 7 cut(s) 172, 272, 827, 857, 868, 919, 1279
AjnI CCWGG 3 cut(s) 133, 139, 1313
AleI CACNNNNGTG 1 cut(s) 542
AluBI AGCT 7 cut(s) 15, 365, 611, 778, 1261, 1328, 1340
AluI AGCT 7 cut(s) 15, 365, 611, 778, 1261, 1328, 1340
Alw26I GTCTC 2 cut(s) 397, 524
AlwI GGATC 1 cut(s) 47
AoxI GGCC 2 cut(s) 119, 966
ApaI GGGCCC 1 cut(s) 123
ApeKI GCWGC 2 cut(s) 446, 517
ApoI RAATTY 2 cut(s) 464, 749
ArsI GACNNNNNNTTYG 2 cut(s) 879, 911
AsiGI ACCGGT 1 cut(s) 670
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 7 cut(s) 119, 120, 137, 146, 668, 966, 1056
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 2 cut(s) 190, 310
AvaII GGWCC 4 cut(s) 137, 146, 668, 1056
BaeGI GKGCMC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 856
BbvI GCAGC 2 cut(s) 433, 529
BccI CCATC 5 cut(s) 496, 507, 628, 1024, 1192
BceAI ACGGC 2 cut(s) 259, 527
BciT130I CCWGG 3 cut(s) 135, 141, 1315
BcnI CCSGG 1 cut(s) 455
BcoDI GTCTC 2 cut(s) 397, 524
BfaI CTAG 2 cut(s) 36, 926
BfmI CTRYAG 3 cut(s) 447, 663, 1123
BglII AGATCT 1 cut(s) 1035
BisI GCNGC 3 cut(s) 115, 447, 518
BlsI GCNGC 3 cut(s) 116, 448, 519
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 4 cut(s) 135, 141, 455, 1315
Bme18I GGWCC 4 cut(s) 137, 146, 668, 1056
BmgT120I GGNCC 7 cut(s) 119, 120, 137, 146, 668, 966, 1056
BmiI GGNNCC 2 cut(s) 121, 459
BmrFI CCNGG 4 cut(s) 135, 141, 455, 1315
BmsI GCATC 6 cut(s) 210, 333, 334, 637, 864, 1162
BpiI GAAGAC 1 cut(s) 856
BplI GAGNNNNNCTC 2 cut(s) 1025, 1057
BpmI CTGGAG 1 cut(s) 515
Bpu10I CCTNAGC 2 cut(s) 612, 1287
BpuEI CTTGAG 4 cut(s) 491, 638, 794, 939
BpuMI CCSGG 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 1034
BsaI GGTCTC 2 cut(s) 397, 524
BsaJI CCNNGG 6 cut(s) 133, 357, 1044, 1059, 1096, 1314
BsaWI WCCGGW 2 cut(s) 148, 670
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 949, 1263
Bse118I RCCGGY 3 cut(s) 320, 670, 1022
Bse1I ACTGG 2 cut(s) 447, 498
Bse8I GATNNNNATC 1 cut(s) 1034
BseBI CCWGG 3 cut(s) 135, 141, 1315
BseDI CCNNGG 6 cut(s) 133, 357, 1044, 1059, 1096, 1314
BseGI GGATG 5 cut(s) 225, 349, 518, 918, 1092
BseJI GATNNNNATC 1 cut(s) 1034
BseLI CCNNNNNNNGG 3 cut(s) 140, 949, 1263
BseMII CTCAG 6 cut(s) 290, 723, 738, 962, 1084, 1398
BseNI ACTGG 2 cut(s) 447, 498
BseRI GAGGAG 3 cut(s) 347, 792, 797
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 2 cut(s) 433, 529
BseYI CCCAGC 2 cut(s) 1257, 1261
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 2 cut(s) 121, 968
BshTI ACCGGT 1 cut(s) 670
BsiSI CCGG 6 cut(s) 149, 161, 321, 455, 671, 1023
BslFI GGGAC 3 cut(s) 116, 389, 673
BslI CCNNNNNNNGG 3 cut(s) 140, 949, 1263
BsmAI GTCTC 2 cut(s) 397, 524
BsmFI GGGAC 3 cut(s) 116, 389, 673
BsmI GAATGC 2 cut(s) 684, 1215
BsnI GGCC 2 cut(s) 121, 968
Bso31I GGTCTC 2 cut(s) 397, 524
Bsp120I GGGCCC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 4 cut(s) 39, 762, 960, 1035
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 4 cut(s) 114, 117, 341, 882
BspANI GGCC 2 cut(s) 121, 968
BspCNI CTCAG 6 cut(s) 289, 722, 737, 961, 1083, 1399
BspFNI CGCG 1 cut(s) 341
BspHI TCATGA 2 cut(s) 201, 262
BspLI GGNNCC 2 cut(s) 121, 459
BspMAI CTGCAG 1 cut(s) 451
BspPI GGATC 1 cut(s) 47
BspTNI GGTCTC 2 cut(s) 397, 524
BsrFI RCCGGY 3 cut(s) 320, 670, 1022
BsrI ACTGG 2 cut(s) 447, 498
BssAI RCCGGY 3 cut(s) 320, 670, 1022
BssECI CCNNGG 6 cut(s) 133, 357, 1044, 1059, 1096, 1314
BssMI GATC 4 cut(s) 39, 762, 960, 1035
BssT1I CCWWGG 4 cut(s) 357, 1044, 1059, 1096
Bst2UI CCWGG 3 cut(s) 135, 141, 1315
Bst4CI ACNGT 2 cut(s) 75, 904
Bst6I CTCTTC 2 cut(s) 200, 573
BstAPI GCANNNNNTGC 3 cut(s) 446, 1186, 1376
BstC8I GCNNGC 3 cut(s) 7, 119, 349
BstDEI CTNAG 8 cut(s) 276, 612, 709, 724, 948, 1070, 1287, 1407
BstDSI CCRYGG 1 cut(s) 357
BstEII GGTNACC 1 cut(s) 316
BstENI CCTNNNNNAGG 2 cut(s) 138, 947
BstF5I GGATG 5 cut(s) 225, 349, 518, 918, 1092
BstFNI CGCG 1 cut(s) 341
BstKTI GATC 4 cut(s) 42, 765, 963, 1038
BstMAI GTCTC 2 cut(s) 397, 524
BstMBI GATC 4 cut(s) 39, 762, 960, 1035
BstMWI GCNNNNNNNGC 4 cut(s) 446, 1112, 1186, 1376
BstNI CCWGG 3 cut(s) 135, 141, 1315
BstPI GGTNACC 1 cut(s) 316
BstSCI CCNGG 4 cut(s) 133, 139, 453, 1313
BstSFI CTRYAG 3 cut(s) 447, 663, 1123
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 433, 529
BstV2I GAAGAC 1 cut(s) 856
BstX2I RGATCY 1 cut(s) 1035
BstYI RGATCY 1 cut(s) 1035
BsuRI GGCC 2 cut(s) 121, 968
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 5 cut(s) 225, 349, 518, 918, 1092
BtsI GCAGTG 2 cut(s) 537, 1218
BtsIMutI CAGTG 3 cut(s) 440, 537, 1218
Cac8I GCNNGC 3 cut(s) 7, 119, 349
CciI TCATGA 2 cut(s) 201, 262
Cfr10I RCCGGY 3 cut(s) 320, 670, 1022
Cfr13I GGNCC 7 cut(s) 119, 120, 137, 146, 668, 966, 1056
Csp6I GTAC 3 cut(s) 337, 376, 715
CspAI ACCGGT 1 cut(s) 670
CviAII CATG 6 cut(s) 202, 224, 263, 304, 358, 1027
CviQI GTAC 3 cut(s) 337, 376, 715
DdeI CTNAG 8 cut(s) 276, 612, 709, 724, 948, 1070, 1287, 1407
DpnI GATC 4 cut(s) 41, 764, 962, 1037
DpnII GATC 4 cut(s) 39, 762, 960, 1035
Eam1104I CTCTTC 2 cut(s) 200, 573
EarI CTCTTC 2 cut(s) 200, 573
Eco130I CCWWGG 4 cut(s) 357, 1044, 1059, 1096
Eco24I GRGCYC 1 cut(s) 123
Eco31I GGTCTC 2 cut(s) 397, 524
Eco32I GATATC 1 cut(s) 1092
Eco47I GGWCC 4 cut(s) 137, 146, 668, 1056
Eco57I CTGAAG 1 cut(s) 1376
Eco91I GGTNACC 1 cut(s) 316
EcoNI CCTNNNNNAGG 2 cut(s) 138, 947
EcoO65I GGTNACC 1 cut(s) 316
EcoRII CCWGG 3 cut(s) 133, 139, 1313
EcoRV GATATC 1 cut(s) 1092
EcoT14I CCWWGG 4 cut(s) 357, 1044, 1059, 1096
EcoT22I ATGCAT 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 4 cut(s) 357, 1044, 1059, 1096
FaeI CATG 6 cut(s) 205, 227, 266, 307, 361, 1030
FaqI GGGAC 3 cut(s) 116, 389, 673
FatI CATG 6 cut(s) 201, 223, 262, 303, 357, 1026
FauI CCCGC 1 cut(s) 110
Fnu4HI GCNGC 3 cut(s) 115, 447, 518
FokI GGATG 5 cut(s) 232, 356, 525, 925, 1099
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 3 cut(s) 115, 447, 518
FspBI CTAG 2 cut(s) 36, 926
GluI GCNGC 3 cut(s) 115, 447, 518
GsaI CCCAGC 2 cut(s) 1261, 1265
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 2 cut(s) 121, 968
HapII CCGG 6 cut(s) 149, 161, 321, 455, 671, 1023
Hin1II CATG 6 cut(s) 205, 227, 266, 307, 361, 1030
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 7 cut(s) 198, 382, 707, 722, 814, 989, 1015
HpaI GTTAAC 1 cut(s) 282
HpaII CCGG 6 cut(s) 149, 161, 321, 455, 671, 1023
HphI GGTGA 2 cut(s) 190, 310
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 4 cut(s) 712, 721, 727, 1356
Hpy8I GTNNAC 1 cut(s) 282
HpyAV CCTTC 9 cut(s) 105, 188, 565, 881, 929, 1261, 1273, 1339, 1351
HpyCH4III ACNGT 2 cut(s) 75, 904
HpyCH4IV ACGT 1 cut(s) 931
HpyCH4V TGCA 8 cut(s) 223, 449, 479, 489, 565, 772, 877, 1213
HpyF10VI GCNNNNNNNGC 4 cut(s) 446, 1112, 1186, 1376
HpyF3I CTNAG 8 cut(s) 276, 612, 709, 724, 948, 1070, 1287, 1407
HpySE526I ACGT 1 cut(s) 931
Hsp92II CATG 6 cut(s) 205, 227, 266, 307, 361, 1030
KspAI GTTAAC 1 cut(s) 282
Kzo9I GATC 4 cut(s) 39, 762, 960, 1035
LmnI GCTCC 2 cut(s) 20, 1111
Lsp1109I GCAGC 2 cut(s) 433, 529
LweI GCATC 6 cut(s) 210, 333, 334, 637, 864, 1162
MaeI CTAG 2 cut(s) 36, 926
MaeII ACGT 1 cut(s) 931
MaeIII GTNAC 2 cut(s) 316, 796
MalI GATC 4 cut(s) 41, 764, 962, 1037
MboI GATC 4 cut(s) 39, 762, 960, 1035
MboII GAAGA 3 cut(s) 217, 590, 856
MflI RGATCY 1 cut(s) 1035
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 3 cut(s) 397, 464, 749
MlyI GAGTC 2 cut(s) 701, 716
MmeI TCCRAC 1 cut(s) 744
Mph1103I ATGCAT 1 cut(s) 225
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 5 cut(s) 48, 236, 281, 549, 678
MslI CAYNNNNRTG 2 cut(s) 542, 1025
MspA1I CMGCKG 1 cut(s) 1261
MspI CCGG 6 cut(s) 149, 161, 321, 455, 671, 1023
MspR9I CCNGG 4 cut(s) 135, 141, 455, 1315
Mva1269I GAATGC 2 cut(s) 684, 1215
MvaI CCWGG 3 cut(s) 135, 141, 1315
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 4 cut(s) 446, 1112, 1186, 1376
NciI CCSGG 1 cut(s) 455
NcoI CCATGG 1 cut(s) 357
NdeII GATC 4 cut(s) 39, 762, 960, 1035
NlaIII CATG 6 cut(s) 205, 227, 266, 307, 361, 1030
NlaIV GGNNCC 2 cut(s) 121, 459
NmeAIII GCCGAG 1 cut(s) 553
NmuCI GTSAC 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 225
OliI CACNNNNGTG 1 cut(s) 542
PagI TCATGA 2 cut(s) 201, 262
PctI GAATGC 2 cut(s) 684, 1215
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 5 cut(s) 198, 382, 814, 989, 1015
PinAI ACCGGT 1 cut(s) 670
PkrI GCNGC 3 cut(s) 116, 448, 519
PleI GAGTC 2 cut(s) 701, 716
PpsI GAGTC 2 cut(s) 701, 716
Psp6I CCWGG 3 cut(s) 133, 139, 1313
PspEI GGTNACC 1 cut(s) 316
PspFI CCCAGC 2 cut(s) 1257, 1261
PspGI CCWGG 3 cut(s) 133, 139, 1313
PspN4I GGNNCC 2 cut(s) 121, 459
PspOMI GGGCCC 1 cut(s) 119
PspPI GGNCC 7 cut(s) 119, 120, 137, 146, 668, 966, 1056
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 1035
PvuII CAGCTG 1 cut(s) 1261
RsaI GTAC 3 cut(s) 338, 377, 716
RsaNI GTAC 3 cut(s) 337, 376, 715
RseI CAYNNNNRTG 2 cut(s) 542, 1025
SaqAI TTAA 5 cut(s) 48, 236, 281, 549, 678
SatI GCNGC 3 cut(s) 115, 447, 518
Sau3AI GATC 4 cut(s) 39, 762, 960, 1035
Sau96I GGNCC 7 cut(s) 119, 120, 137, 146, 668, 966, 1056
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 2 cut(s) 701, 716
ScrFI CCNGG 4 cut(s) 135, 141, 455, 1315
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 6 cut(s) 210, 333, 334, 637, 864, 1162
SfcI CTRYAG 3 cut(s) 447, 663, 1123
SinI GGWCC 4 cut(s) 137, 146, 668, 1056
SmiMI CAYNNNNRTG 2 cut(s) 542, 1025
SmlI CTYRAG 4 cut(s) 470, 653, 809, 954
SmoI CTYRAG 4 cut(s) 470, 653, 809, 954
Sse9I AATT 3 cut(s) 397, 464, 749
SsiI CCGC 4 cut(s) 114, 117, 341, 882
SspMI CTAG 2 cut(s) 36, 926
StyD4I CCNGG 4 cut(s) 133, 139, 453, 1313
StyI CCWWGG 4 cut(s) 357, 1044, 1059, 1096
TaaI ACNGT 2 cut(s) 75, 904
TaiI ACGT 1 cut(s) 934
TaqI TCGA 2 cut(s) 576, 765
TasI AATT 3 cut(s) 397, 464, 749
TatI WGTACW 1 cut(s) 714
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 5 cut(s) 198, 382, 814, 989, 1015
Tru1I TTAA 5 cut(s) 48, 236, 281, 549, 678
Tru9I TTAA 5 cut(s) 48, 236, 281, 549, 678
TscAI CASTG 3 cut(s) 447, 544, 1225
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 2 cut(s) 446, 517
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 5 cut(s) 87, 190, 197, 218, 1322
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 3 cut(s) 447, 544, 1225
VpaK11BI GGWCC 4 cut(s) 137, 146, 668, 1056
XagI CCTNNNNNAGG 2 cut(s) 138, 947
XapI RAATTY 2 cut(s) 464, 749
XcmI CCANNNNNNNNNTGG 2 cut(s) 310, 364
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 2 cut(s) 36, 926
ZrmI AGTACT 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.