Rmu_sc0004500.1_g000006

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004500.1
OG0018825
Physical Location & Seq
Reverse (-)
31354 .. 31938
585 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
atgaagacggccaccaaaacaggggtgatggtgatgacaatattatttactttgtgtggtaccttgggttatgctgcatttggagatgaaaaagtaccagaaaatctcatggctggttttctatctcataaggccttctggatagtggacttggccaatgtcttcattgtggtgcacctagtgggtgcatttcaggagatggccgaggtctggttttgtaaccaaggaaagggcagtaagctttgggaaggtgacgttcaacatcaacatgcttcgcttatgctgcagaacgggctttgtgcttttggctactgtgattgccacagcactgcctttcttctattggctactggccgctcaccatctacttcccgttgcagctgcacattgcgcaaaagaagatgcagcgagcaaccgtccattggtttggcctccagctgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

147

Amino Acids

16.03

Weight (kDa)

8.1

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 1 - 65 1.1e-11 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44100
rosa_chinensis RchiOBHm_Chr6g0298541
rosa_laevigata RLG00000011505
rosa_multiflora Rmu_sc0004500.1_g000006
rosa_samantha Rh6BG400200 Rh6CG406100 Rh6DG392600 Rh6DG392700
rosa_wichuraiana Rw6G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 392
Acc65I GGTACC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 59
AccBSI CCGCTC 1 cut(s) 357
AciI CCGC 1 cut(s) 355
AcoI YGGCCR 4 cut(s) 9, 153, 201, 352
AdeI CACNNNGTG 1 cut(s) 181
AfaI GTAC 2 cut(s) 61, 96
AfiI CCNNNNNNNGG 4 cut(s) 21, 210, 229, 422
AgsI TTSAA 1 cut(s) 260
AluBI AGCT 3 cut(s) 241, 381, 438
AluI AGCT 3 cut(s) 241, 381, 438
Alw21I GWGCWC 1 cut(s) 177
Alw44I GTGCAC 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 441
AoxI GGCC 6 cut(s) 9, 132, 153, 201, 352, 429
ApaLI GTGCAC 1 cut(s) 173
ApeKI GCWGC 6 cut(s) 74, 283, 378, 381, 405, 438
Asp718I GGTACC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 393
AsuHPI GGTGA 4 cut(s) 37, 43, 263, 351
BaeGI GKGCMC 1 cut(s) 177
BalI TGGCCA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 11, 154
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 6 cut(s) 61, 270, 368, 390, 417, 425
BccI CCATC 3 cut(s) 22, 193, 370
BceAI ACGGC 1 cut(s) 24
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 284
BisI GCNGC 7 cut(s) 75, 284, 355, 379, 382, 406, 439
BlsI GCNGC 7 cut(s) 76, 285, 356, 380, 383, 407, 440
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 2 cut(s) 11, 154
BpmI CTGGAG 1 cut(s) 418
BsaJI CCNNGG 3 cut(s) 63, 204, 223
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 210, 229, 422
Bse1I ACTGG 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 386
BseDI CCNNGG 3 cut(s) 63, 204, 223
BseLI CCNNNNNNNGG 4 cut(s) 21, 210, 229, 422
BseMI GCAATG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 6 cut(s) 61, 270, 368, 390, 417, 425
BsgI GTGCAG 1 cut(s) 367
BshFI GGCC 6 cut(s) 11, 134, 155, 203, 354, 431
BshNI GGYRCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 177
BslI CCNNNNNNNGG 4 cut(s) 21, 210, 229, 422
BsnI GGCC 6 cut(s) 11, 134, 155, 203, 354, 431
Bsp1286I GDGCHC 1 cut(s) 177
BspACI CCGC 1 cut(s) 355
BspANI GGCC 6 cut(s) 11, 134, 155, 203, 354, 431
BspLI GGNNCC 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 59
BsrBI CCGCTC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 386
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 63, 204, 223
BssT1I CCWWGG 2 cut(s) 63, 223
Bst4CI ACNGT 2 cut(s) 314, 417
BstC8I GCNNGC 1 cut(s) 410
BstHHI GCGC 1 cut(s) 393
BstMWI GCNNNNNNNGC 3 cut(s) 283, 292, 390
BstNSI RCATGY 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 284
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 6 cut(s) 61, 270, 368, 390, 417, 425
BstV2I GAAGAC 2 cut(s) 11, 154
BstXI CCANNNNNNTGG 1 cut(s) 427
BsuRI GGCC 6 cut(s) 11, 134, 155, 203, 354, 431
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 410
CaiI CAGNNNCTG 1 cut(s) 441
CfoI GCGC 1 cut(s) 393
Csp6I GTAC 2 cut(s) 60, 95
CviAII CATG 2 cut(s) 109, 269
CviQI GTAC 2 cut(s) 60, 95
DraIII CACNNNGTG 1 cut(s) 181
EaeI YGGCCR 4 cut(s) 9, 153, 201, 352
Eco130I CCWWGG 2 cut(s) 63, 223
Eco147I AGGCCT 1 cut(s) 134
EcoT14I CCWWGG 2 cut(s) 63, 223
ErhI CCWWGG 2 cut(s) 63, 223
FaeI CATG 2 cut(s) 112, 272
FaiI YATR 5 cut(s) 72, 110, 129, 270, 281
FatI CATG 2 cut(s) 108, 268
Fnu4HI GCNGC 7 cut(s) 75, 284, 355, 379, 382, 406, 439
Fsp4HI GCNGC 7 cut(s) 75, 284, 355, 379, 382, 406, 439
FspBI CTAG 1 cut(s) 179
FspI TGCGCA 1 cut(s) 392
GlaI GCGC 1 cut(s) 392
GluI GCNGC 7 cut(s) 75, 284, 355, 379, 382, 406, 439
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 6 cut(s) 11, 134, 155, 203, 354, 431
HhaI GCGC 1 cut(s) 393
Hin1II CATG 2 cut(s) 112, 272
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 239
HphI GGTGA 4 cut(s) 37, 43, 263, 351
Hpy166II GTNNAC 2 cut(s) 148, 175
Hpy188III TCNNGA 2 cut(s) 139, 194
Hpy8I GTNNAC 2 cut(s) 148, 175
HpyAV CCTTC 2 cut(s) 145, 242
HpyCH4III ACNGT 2 cut(s) 314, 417
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 7 cut(s) 77, 175, 188, 286, 378, 384, 405
HpyF10VI GCNNNNNNNGC 3 cut(s) 283, 292, 390
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 2 cut(s) 112, 272
HspAI GCGC 1 cut(s) 391
KpnI GGTACC 1 cut(s) 63
LpnPI CCDG 7 cut(s) 6, 99, 111, 124, 179, 196, 336
Lsp1109I GCAGC 6 cut(s) 61, 270, 368, 390, 417, 425
LweI GCATC 1 cut(s) 392
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 218, 251
MbiI CCGCTC 1 cut(s) 357
MboII GAAGA 4 cut(s) 16, 154, 329, 411
MhlI GDGCHC 1 cut(s) 177
MlsI TGGCCA 1 cut(s) 155
MluNI TGGCCA 1 cut(s) 155
MnlI CCTC 2 cut(s) 199, 442
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MslI CAYNNNNRTG 2 cut(s) 170, 267
Msp20I TGGCCA 1 cut(s) 155
MspA1I CMGCKG 2 cut(s) 381, 438
MwoI GCNNNNNNNGC 3 cut(s) 283, 292, 390
NlaIII CATG 2 cut(s) 112, 272
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 251
NsbI TGCGCA 1 cut(s) 392
NspI RCATGY 1 cut(s) 272
PceI AGGCCT 1 cut(s) 134
PkrI GCNGC 7 cut(s) 76, 285, 356, 380, 383, 407, 440
PspN4I GGNNCC 1 cut(s) 61
PstI CTGCAG 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 441
PvuII CAGCTG 2 cut(s) 381, 438
RsaI GTAC 2 cut(s) 61, 96
RsaNI GTAC 2 cut(s) 60, 95
RseI CAYNNNNRTG 2 cut(s) 170, 267
SatI GCNGC 7 cut(s) 75, 284, 355, 379, 382, 406, 439
SduI GDGCHC 1 cut(s) 177
SetI ASST 8 cut(s) 65, 180, 210, 243, 253, 258, 383, 440
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 1 cut(s) 284
SmiMI CAYNNNNRTG 2 cut(s) 170, 267
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 1 cut(s) 355
SspI AATATT 1 cut(s) 42
SspMI CTAG 1 cut(s) 179
StuI AGGCCT 1 cut(s) 134
StyI CCWWGG 2 cut(s) 63, 223
TaaI ACNGT 2 cut(s) 314, 417
TaiI ACGT 1 cut(s) 258
TauI GCSGC 1 cut(s) 357
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 6 cut(s) 74, 283, 378, 381, 405, 438
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 3 cut(s) 17, 102, 154
TspRI CASTG 1 cut(s) 334
VneI GTGCAC 1 cut(s) 173
XceI RCATGY 1 cut(s) 272
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.